RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 CRYM-AS1A6NIL9 109 aa2.47□□□□□ -2.01
USP54-206ENST00000433394 NDUFC1O43677 76 aa2.47□□□□□ -2.01
USP54-206ENST00000433394 ADCYAP1P18509 176 aa2.47□□□□□ -2.01
USP54-206ENST00000433394 ZNF137PP52743 207 aa2.47□□□□□ -2.01
USP54-206ENST00000433394 EDDM3BP56851 147 aa2.47□□□□□ -2.01
USP54-206ENST00000433394 SUPT4H1P63272 117 aaKnown RBP2.47□□□□□ -2.01
USP54-206ENST00000433394 PCOTHQ58A44 107 aa2.47□□□□□ -2.01
USP54-206ENST00000433394 NMSQ5H8A3 153 aa2.47□□□□□ -2.01
USP54-206ENST00000433394 S100A7L2Q5SY68 101 aa2.47□□□□□ -2.01
USP54-206ENST00000433394 ZNF826PQ6ZT77 177 aa2.47□□□□□ -2.01
USP54-206ENST00000433394 ARL17AQ8IVW1 177 aa2.47□□□□□ -2.01
USP54-206ENST00000433394 Q8N8P6 123 aa2.47□□□□□ -2.01
USP54-206ENST00000433394 C18orf32Q8TCD1 76 aa2.47□□□□□ -2.01
USP54-206ENST00000433394 GAFA1Q96PS6 74 aa2.47□□□□□ -2.01
USP54-206ENST00000433394 NABP2Q9BQ15 211 aa2.47□□□□□ -2.01
USP54-206ENST00000433394 NMES1Q9C002 83 aa2.47□□□□□ -2.01
USP54-206ENST00000433394 NXT2Q9NPJ8 142 aaKnown RBP2.47□□□□□ -2.01
USP54-206ENST00000433394 MED13LQ71F56 2210 aa2.47□□□□□ -2.01
USP54-206ENST00000433394 ITPR3Q14573 2671 aa2.47□□□□□ -2.01
USP54-206ENST00000433394 FLNAP21333 2647 aaKnown RBP2.47□□□□□ -2.01
USP54-206ENST00000433394 ABCA1O95477 2261 aa2.46□□□□□ -2.02
USP54-206ENST00000433394 TRAV14DV4A0A0A6YYC5 116 aa2.46□□□□□ -2.02
USP54-206ENST00000433394 hDV103S1A0JD37 113 aa2.46□□□□□ -2.02
USP54-206ENST00000433394 UMAD1C9J7I0 102 aa2.46□□□□□ -2.02
USP54-206ENST00000433394 CRPP02741 224 aa2.46□□□□□ -2.02
USP54-206ENST00000433394 SFTA3P0C7M3 94 aa2.46□□□□□ -2.02
USP54-206ENST00000433394 SMIM13P0DJ93 91 aa2.46□□□□□ -2.02
USP54-206ENST00000433394 KRTAP12-1P59990 96 aa2.46□□□□□ -2.02
USP54-206ENST00000433394 RBM3P98179 157 aaKnown RBP2.46□□□□□ -2.02
USP54-206ENST00000433394 MINOS1Q5TGZ0 78 aa2.46□□□□□ -2.02
USP54-206ENST00000433394 FP248Q71RG6 208 aaPredicted RBP2.46□□□□□ -2.02
USP54-206ENST00000433394 SERP2Q8N6R1 65 aa2.46□□□□□ -2.02
USP54-206ENST00000433394 RETNLBQ9BQ08 111 aa2.46□□□□□ -2.02
USP54-206ENST00000433394 TNCP24821 2201 aa2.46□□□□□ -2.02
USP54-206ENST00000433394 B4DSR2 109 aa2.45□□□□□ -2.02
USP54-206ENST00000433394 ACYP1P07311 99 aa2.45□□□□□ -2.02
USP54-206ENST00000433394 FXYD4P59646 89 aa2.45□□□□□ -2.02
USP54-206ENST00000433394 WFDC2Q14508 124 aa2.45□□□□□ -2.02
USP54-206ENST00000433394 KRTAP13-4Q3LI77 160 aa2.45□□□□□ -2.02
USP54-206ENST00000433394 ZNF833PQ6ZTB9 187 aa2.45□□□□□ -2.02
USP54-206ENST00000433394 DEFB108BQ8NET1 73 aa2.45□□□□□ -2.02
USP54-206ENST00000433394 DYNLRB2Q8TF09 96 aa2.45□□□□□ -2.02
USP54-206ENST00000433394 FXYD6Q9H0Q3 95 aa2.45□□□□□ -2.02
USP54-206ENST00000433394 TEX15Q9BXT5 2789 aa2.45□□□□□ -2.02
USP54-206ENST00000433394 ZANQ9Y493 2812 aa2.45□□□□□ -2.02
USP54-206ENST00000433394 PRB1P04280 392 aa2.44□□□□□ -2.02
USP54-206ENST00000433394 DEFB113Q30KQ7 82 aa2.44□□□□□ -2.02
USP54-206ENST00000433394 ZNF818PQ6ZRF7 136 aa2.44□□□□□ -2.02
USP54-206ENST00000433394 TMEM141Q96I45 108 aa2.44□□□□□ -2.02
USP54-206ENST00000433394 BPESC1Q9GZL8 116 aa2.44□□□□□ -2.02
USP54-206ENST00000433394 MRPL35Q9NZE8 188 aaKnown RBP2.44□□□□□ -2.02
USP54-206ENST00000433394 MTORP42345 2549 aa2.44□□□□□ -2.02
USP54-206ENST00000433394 MXRA5Q9NR99 2828 aa2.44□□□□□ -2.02
USP54-206ENST00000433394 ABCA2Q9BZC7 2435 aa2.43□□□□□ -2.02
USP54-206ENST00000433394 A6NN06 94 aa2.43□□□□□ -2.02
USP54-206ENST00000433394 NUPR1O60356 82 aa2.43□□□□□ -2.02
USP54-206ENST00000433394 CCKP06307 115 aa2.43□□□□□ -2.02
USP54-206ENST00000433394 SAA2P0DJI9 122 aaPredicted RBP2.43□□□□□ -2.02
USP54-206ENST00000433394 RHOHQ15669 191 aa2.43□□□□□ -2.02
USP54-206ENST00000433394 ESRGQ1W209 222 aa2.43□□□□□ -2.02
USP54-206ENST00000433394 LINC00269Q8N2A0 174 aa2.43□□□□□ -2.02
USP54-206ENST00000433394 SPACA4Q8TDM5 124 aa2.43□□□□□ -2.02
USP54-206ENST00000433394 PPP1R1CQ8WVI7 109 aa2.43□□□□□ -2.02
USP54-206ENST00000433394 SLC50A1Q9BRV3 221 aa2.43□□□□□ -2.02
USP54-206ENST00000433394 NSD1Q96L73 2696 aaPredicted RBP2.43□□□□□ -2.02
USP54-206ENST00000433394 ACANP16112 2415 aa2.42□□□□□ -2.02
USP54-206ENST00000433394 SONP18583 2426 aaKnown RBP2.42□□□□□ -2.02
USP54-206ENST00000433394 FBN2P35556 2912 aa2.42□□□□□ -2.02
USP54-206ENST00000433394 IBA57-AS1B1ANH7 110 aa2.42□□□□□ -2.02
USP54-206ENST00000433394 UBE2G1P62253 170 aa2.42□□□□□ -2.02
USP54-206ENST00000433394 Q1T7F1 81 aa2.42□□□□□ -2.02
USP54-206ENST00000433394 PSMG4Q5JS54 123 aa2.42□□□□□ -2.02
USP54-206ENST00000433394 CASC2Q6XLA1 102 aa2.42□□□□□ -2.02
USP54-206ENST00000433394 CYP2G1PQ6ZSU1 146 aa2.42□□□□□ -2.02
USP54-206ENST00000433394 TMEM14BQ9NUH8 114 aa2.42□□□□□ -2.02
USP54-206ENST00000433394 MAST4O15021 2626 aa2.41□□□□□ -2.02
USP54-206ENST00000433394 PDZD2O15018 2839 aa2.41□□□□□ -2.02
USP54-206ENST00000433394 FXYD6-FXYD2A0A087WZ82 144 aa2.41□□□□□ -2.02
USP54-206ENST00000433394 LYNX1G3V0Z9 82 aa2.41□□□□□ -2.02
USP54-206ENST00000433394 LYNX1P0DP58 116 aa2.41□□□□□ -2.02
USP54-206ENST00000433394 CCL3L1P16619 93 aa2.41□□□□□ -2.02
USP54-206ENST00000433394 SERF2P84101 59 aa2.41□□□□□ -2.02
USP54-206ENST00000433394 SPANXN5Q5MJ07 72 aa2.41□□□□□ -2.02
USP54-206ENST00000433394 TMEM170BQ5T4T1 132 aa2.41□□□□□ -2.02
USP54-206ENST00000433394 VMO1Q7Z5L0 202 aa2.41□□□□□ -2.02
USP54-206ENST00000433394 TMEM167AQ8TBQ9 72 aa2.41□□□□□ -2.02
USP54-206ENST00000433394 ZNF625Q96I27 306 aaPredicted RBP2.41□□□□□ -2.02
USP54-206ENST00000433394 C14orf132Q9NPU4 83 aa2.41□□□□□ -2.02
USP54-206ENST00000433394 NDUFA12Q9UI09 145 aa2.41□□□□□ -2.02
USP54-206ENST00000433394 SETD2Q9BYW2 2564 aaPredicted RBP2.41□□□□□ -2.02
USP54-206ENST00000433394 SETXQ7Z333 2677 aaKnown RBP2.4□□□□□ -2.02
USP54-206ENST00000433394 A0A096LNT2 108 aa2.4□□□□□ -2.03
USP54-206ENST00000433394 TRAV3A0A0B4J244 114 aa2.4□□□□□ -2.03
USP54-206ENST00000433394 TRBV10-3A0A0K0K1G6 114 aa2.4□□□□□ -2.03
USP54-206ENST00000433394 CEBPZOSA8MTT3 80 aa2.4□□□□□ -2.03
USP54-206ENST00000433394 F2Z2F3 143 aa2.4□□□□□ -2.03
USP54-206ENST00000433394 BCE1O60756 84 aa2.4□□□□□ -2.03
USP54-206ENST00000433394 NDUFA3O95167 84 aa2.4□□□□□ -2.03
USP54-206ENST00000433394 MGST1P10620 155 aaKnown RBP2.4□□□□□ -2.03
USP54-206ENST00000433394 KRTAP12-4P60329 112 aa2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 143.1 ms