RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 LINC00158P58513 81 aa8.39□□□□□ -1.07
SDC1-204ENST00000429035 COX17Q14061 63 aa8.39□□□□□ -1.07
SDC1-204ENST00000429035 BAGE3Q86Y29 109 aa8.39□□□□□ -1.07
SDC1-204ENST00000429035 TRAPPC1Q9Y5R8 145 aa8.39□□□□□ -1.07
SDC1-204ENST00000429035 LINC00614P0C842 121 aa8.38□□□□□ -1.07
SDC1-204ENST00000429035 C18orf32Q8TCD1 76 aa8.38□□□□□ -1.07
SDC1-204ENST00000429035 URB1-AS1Q96HZ7 61 aa8.38□□□□□ -1.07
SDC1-204ENST00000429035 RHEBQ15382 184 aa8.37□□□□□ -1.07
SDC1-204ENST00000429035 TPRXLQ17RH7 258 aa8.37□□□□□ -1.07
SDC1-204ENST00000429035 SFTA2Q6UW10 78 aa8.37□□□□□ -1.07
SDC1-204ENST00000429035 PLEKHB2Q96CS7 222 aa8.37□□□□□ -1.07
SDC1-204ENST00000429035 NCR3O14931 201 aa8.35□□□□□ -1.07
SDC1-204ENST00000429035 ATP6V1G1O75348 118 aa8.35□□□□□ -1.07
SDC1-204ENST00000429035 KRTAP9-2Q9BYQ4 174 aa8.35□□□□□ -1.07
SDC1-204ENST00000429035 CHTOPQ9Y3Y2 248 aaKnown RBP8.35□□□□□ -1.07
SDC1-204ENST00000429035 MUC17Q685J3 4493 aa8.35□□□□□ -1.07
SDC1-204ENST00000429035 MEIG1Q5JSS6 88 aa8.34□□□□□ -1.07
SDC1-204ENST00000429035 PPDPFQ9H3Y8 114 aa8.34□□□□□ -1.07
SDC1-204ENST00000429035 C4orf48Q5BLP8 95 aa8.33□□□□□ -1.08
SDC1-204ENST00000429035 SPRR4Q96PI1 79 aa8.33□□□□□ -1.08
SDC1-204ENST00000429035 ZNF706Q9Y5V0 76 aaPredicted RBP8.33□□□□□ -1.08
SDC1-204ENST00000429035 FAT4Q6V0I7 4981 aa8.33□□□□□ -1.08
SDC1-204ENST00000429035 SMIM13P0DJ93 91 aa8.32□□□□□ -1.08
SDC1-204ENST00000429035 PRYO14603 147 aa8.31□□□□□ -1.08
SDC1-204ENST00000429035 BOD1L2Q8IYS8 172 aa8.31□□□□□ -1.08
SDC1-204ENST00000429035 TMEM223A0PJW6 202 aa8.3□□□□□ -1.08
SDC1-204ENST00000429035 LCE2AQ5TA79 106 aaPredicted RBP8.3□□□□□ -1.08
SDC1-204ENST00000429035 SPAG11AQ6PDA7 123 aa8.3□□□□□ -1.08
SDC1-204ENST00000429035 DAND5Q8N907 189 aa8.3□□□□□ -1.08
SDC1-204ENST00000429035 ETDCA0A1B0GVM5 59 aa8.29□□□□□ -1.08
SDC1-204ENST00000429035 CTAG1AP78358 180 aa8.29□□□□□ -1.08
SDC1-204ENST00000429035 C10orf91Q5T1B1 145 aa8.29□□□□□ -1.08
SDC1-204ENST00000429035 Q8NBF4 154 aa8.29□□□□□ -1.08
SDC1-204ENST00000429035 MIR7-3HGQ8N6C7 128 aa8.28□□□□□ -1.08
SDC1-204ENST00000429035 IFI27L1Q96BM0 104 aa8.28□□□□□ -1.08
SDC1-204ENST00000429035 H0Y8G0 127 aa8.27□□□□□ -1.09
SDC1-204ENST00000429035 APOC3P02656 99 aa8.27□□□□□ -1.09
SDC1-204ENST00000429035 LINC00337Q8N6G1 96 aa8.27□□□□□ -1.09
SDC1-204ENST00000429035 FP248Q71RG6 208 aaPredicted RBP8.26□□□□□ -1.09
SDC1-204ENST00000429035 SMCR5Q8TEV8 140 aa8.26□□□□□ -1.09
SDC1-204ENST00000429035 TRAV12-1A0A0B4J245 112 aa8.25□□□□□ -1.09
SDC1-204ENST00000429035 S100A12P80511 92 aa8.25□□□□□ -1.09
SDC1-204ENST00000429035 IGLV9-49A0A0B4J1Y8 123 aa8.24□□□□□ -1.09
SDC1-204ENST00000429035 TRBV10-3A0A0K0K1G6 114 aa8.24□□□□□ -1.09
SDC1-204ENST00000429035 HERV-K104P63124 156 aa8.24□□□□□ -1.09
SDC1-204ENST00000429035 NDUFA5Q16718 116 aa8.24□□□□□ -1.09
SDC1-204ENST00000429035 GAGE2AQ6NT46 116 aa8.24□□□□□ -1.09
SDC1-204ENST00000429035 CHCHD1Q96BP2 118 aaKnown RBP8.24□□□□□ -1.09
SDC1-204ENST00000429035 NDUFA12Q9UI09 145 aa8.24□□□□□ -1.09
SDC1-204ENST00000429035 MOBPQ13875 183 aa8.23□□□□□ -1.09
SDC1-204ENST00000429035 MAP1LC3CQ9BXW4 147 aa8.23□□□□□ -1.09
SDC1-204ENST00000429035 KCNQ1DNQ9H478 68 aa8.23□□□□□ -1.09
SDC1-204ENST00000429035 MYMXA0A1B0GTQ4 84 aa8.22□□□□□ -1.09
SDC1-204ENST00000429035 HSBP1O75506 76 aa8.22□□□□□ -1.09
SDC1-204ENST00000429035 SNAPINO95295 136 aa8.22□□□□□ -1.09
SDC1-204ENST00000429035 SPRR1AP35321 89 aa8.22□□□□□ -1.09
SDC1-204ENST00000429035 LINC00587B1AMM8 73 aa8.21□□□□□ -1.1
SDC1-204ENST00000429035 SVBPQ8N300 66 aa8.21□□□□□ -1.1
SDC1-204ENST00000429035 FAM19A2Q8N3H0 131 aa8.21□□□□□ -1.1
SDC1-204ENST00000429035 SPINK1P00995 79 aa8.2□□□□□ -1.1
SDC1-204ENST00000429035 KRTAP13-3Q3SY46 172 aa8.2□□□□□ -1.1
SDC1-204ENST00000429035 KRTAP4-16G5E9R7 235 aaPredicted RBP8.19□□□□□ -1.1
SDC1-204ENST00000429035 DDTP30046 118 aa8.19□□□□□ -1.1
SDC1-204ENST00000429035 TSPEAR-AS2P59090 65 aa8.19□□□□□ -1.1
SDC1-204ENST00000429035 B5MCH6 92 aa8.18□□□□□ -1.1
SDC1-204ENST00000429035 ERC2-IT1O76042 136 aa8.18□□□□□ -1.1
SDC1-204ENST00000429035 LINC00483Q53H64 154 aa8.18□□□□□ -1.1
SDC1-204ENST00000429035 MIEN1Q9BRT3 115 aa8.18□□□□□ -1.1
SDC1-204ENST00000429035 C9orf153Q5TBE3 101 aa8.17□□□□□ -1.1
SDC1-204ENST00000429035 LEPROTO15243 131 aa8.16□□□□□ -1.1
SDC1-204ENST00000429035 HERVK_113P61574 105 aa8.15□□□□□ -1.1
SDC1-204ENST00000429035 ASB16-AS1Q495Z4 193 aa8.15□□□□□ -1.1
SDC1-204ENST00000429035 S100A7L2Q5SY68 101 aa8.15□□□□□ -1.1
SDC1-204ENST00000429035 KRTAP9-6A0A140TA67 174 aa8.14□□□□□ -1.11
SDC1-204ENST00000429035 LEPROTL1O95214 131 aa8.14□□□□□ -1.11
SDC1-204ENST00000429035 LGALS3P17931 250 aaKnown RBP8.14□□□□□ -1.11
SDC1-204ENST00000429035 SEC61BP60468 96 aaKnown RBP8.14□□□□□ -1.11
SDC1-204ENST00000429035 NPC2P61916 151 aa8.14□□□□□ -1.11
SDC1-204ENST00000429035 YPEL4Q96NS1 127 aa8.14□□□□□ -1.11
SDC1-204ENST00000429035 Q9BRP9 147 aa8.14□□□□□ -1.11
SDC1-204ENST00000429035 SPANXB1Q9NS25 103 aaPredicted RBP8.14□□□□□ -1.11
SDC1-204ENST00000429035 TRBV10-2A0A0K0K1G8 114 aa8.13□□□□□ -1.11
SDC1-204ENST00000429035 J3QQQ9 107 aa8.13□□□□□ -1.11
SDC1-204ENST00000429035 LINC01547P58512 204 aaPredicted RBP8.13□□□□□ -1.11
SDC1-204ENST00000429035 Q6ZRX8 168 aa8.13□□□□□ -1.11
SDC1-204ENST00000429035 Q8N377 158 aa8.13□□□□□ -1.11
SDC1-204ENST00000429035 PMCHL2Q9BQD1 86 aa8.13□□□□□ -1.11
SDC1-204ENST00000429035 TRAV23DV6A0A075B6W5 121 aa8.12□□□□□ -1.11
SDC1-204ENST00000429035 PLNP26678 52 aa8.12□□□□□ -1.11
SDC1-204ENST00000429035 SSBP3-AS1Q7Z2R9 100 aa8.12□□□□□ -1.11
SDC1-204ENST00000429035 SERF1AO75920 110 aa8.11□□□□□ -1.11
SDC1-204ENST00000429035 FABP4P15090 132 aa8.11□□□□□ -1.11
SDC1-204ENST00000429035 SLC25A20O43772 301 aa8.1□□□□□ -1.11
SDC1-204ENST00000429035 DPM2O94777 84 aa8.1□□□□□ -1.11
SDC1-204ENST00000429035 TRGC2P03986 189 aa8.1□□□□□ -1.11
SDC1-204ENST00000429035 RPS29P62273 56 aaKnown RBP8.1□□□□□ -1.11
SDC1-204ENST00000429035 JOSD1Q15040 202 aaPredicted RBP8.1□□□□□ -1.11
SDC1-204ENST00000429035 KRTAP4-1Q9BYQ7 146 aa8.1□□□□□ -1.11
SDC1-204ENST00000429035 IGKCP01834 107 aa8.09□□□□□ -1.11
SDC1-204ENST00000429035 NMUP48645 174 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms