RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 XAGE1AQ9HD64 81 aa11.1□□□□□ -0.63
CCDC28B-202ENST00000421922 DNAH10Q8IVF4 4471 aa11.1□□□□□ -0.63
CCDC28B-202ENST00000421922 Q6ZRP5 223 aa11.09□□□□□ -0.63
CCDC28B-202ENST00000421922 IGLV5-52A0A0A0MRZ9 124 aa11.08□□□□□ -0.64
CCDC28B-202ENST00000421922 LOC107984156A0A0G2JMH3 177 aa11.08□□□□□ -0.64
CCDC28B-202ENST00000421922 EIF4EBP3O60516 100 aaPredicted RBP11.08□□□□□ -0.64
CCDC28B-202ENST00000421922 ARL17AQ8IVW1 177 aa11.08□□□□□ -0.64
CCDC28B-202ENST00000421922 C9orf163Q8N9P6 203 aa11.08□□□□□ -0.64
CCDC28B-202ENST00000421922 A0A0B4J2C4 111 aa11.07□□□□□ -0.64
CCDC28B-202ENST00000421922 K7ERJ3 54 aa11.06□□□□□ -0.64
CCDC28B-202ENST00000421922 NDUFC2O95298 119 aa11.05□□□□□ -0.64
CCDC28B-202ENST00000421922 CFC1BP0CG36 223 aa11.05□□□□□ -0.64
CCDC28B-202ENST00000421922 CFC1P0CG37 223 aa11.05□□□□□ -0.64
CCDC28B-202ENST00000421922 LBHQ53QV2 105 aaPredicted RBP11.05□□□□□ -0.64
CCDC28B-202ENST00000421922 IGKV2-24A0A0C4DH68 120 aa11.04□□□□□ -0.64
CCDC28B-202ENST00000421922 A0A1B0GWB2 263 aa11.04□□□□□ -0.64
CCDC28B-202ENST00000421922 C16orf90A8MZG2 172 aa11.04□□□□□ -0.64
CCDC28B-202ENST00000421922 LINC00336Q6ZUF6 198 aa11.04□□□□□ -0.64
CCDC28B-202ENST00000421922 TRAV13-2A0A0B4J235 113 aa11.03□□□□□ -0.64
CCDC28B-202ENST00000421922 Q1RN00 199 aa11.03□□□□□ -0.64
CCDC28B-202ENST00000421922 PRO1854Q9UHT4 67 aa11.03□□□□□ -0.64
CCDC28B-202ENST00000421922 NCR3O14931 201 aa11.02□□□□□ -0.64
CCDC28B-202ENST00000421922 NKAPP1Q8N9T2 125 aa11.02□□□□□ -0.64
CCDC28B-202ENST00000421922 OR13C6PQ8NH95 151 aa11.02□□□□□ -0.64
CCDC28B-202ENST00000421922 A0A096LNI7 61 aa11.01□□□□□ -0.65
CCDC28B-202ENST00000421922 RPL13AP40429 203 aaKnown RBP11.01□□□□□ -0.65
CCDC28B-202ENST00000421922 LINC01620Q4KN68 170 aa11.01□□□□□ -0.65
CCDC28B-202ENST00000421922 C9orf129Q5T035 196 aaKnown RBP11.01□□□□□ -0.65
CCDC28B-202ENST00000421922 LINC00474Q9P2X8 69 aa11.01□□□□□ -0.65
CCDC28B-202ENST00000421922 HERC2O95714 4834 aa11.01□□□□□ -0.65
CCDC28B-202ENST00000421922 DNAH2Q9P225 4427 aa11.01□□□□□ -0.65
CCDC28B-202ENST00000421922 H7C2G1 150 aa11.01□□□□□ -0.65
CCDC28B-202ENST00000421922 S100A7L2Q5SY68 101 aa11□□□□□ -0.65
CCDC28B-202ENST00000421922 PGPEP1Q9NXJ5 209 aa11□□□□□ -0.65
CCDC28B-202ENST00000421922 FUSP35637 526 aaKnown RBP eCLIP10.99□□□□□ -0.65
CCDC28B-202ENST00000421922 IGKV2-28A0A075B6P5 120 aa10.98□□□□□ -0.65
CCDC28B-202ENST00000421922 TRBV10-2A0A0K0K1G8 114 aa10.98□□□□□ -0.65
CCDC28B-202ENST00000421922 IGKV2D-28P01615 120 aa10.98□□□□□ -0.65
CCDC28B-202ENST00000421922 VPREB1P12018 145 aa10.98□□□□□ -0.65
CCDC28B-202ENST00000421922 SDIM1Q6ZPB5 146 aa10.98□□□□□ -0.65
CCDC28B-202ENST00000421922 DPH3Q96FX2 82 aa10.98□□□□□ -0.65
CCDC28B-202ENST00000421922 PLA2G2DQ9UNK4 145 aa10.98□□□□□ -0.65
CCDC28B-202ENST00000421922 TAX1BP3O14907 124 aa10.97□□□□□ -0.65
CCDC28B-202ENST00000421922 PRR3P79522 188 aaKnown RBP10.97□□□□□ -0.65
CCDC28B-202ENST00000421922 FAM19A5Q7Z5A7 132 aaPredicted RBP10.97□□□□□ -0.65
CCDC28B-202ENST00000421922 LINC00337Q8N6G1 96 aa10.97□□□□□ -0.65
CCDC28B-202ENST00000421922 FRAS1Q86XX4 4008 aa10.96□□□□□ -0.65
CCDC28B-202ENST00000421922 M0R378 163 aa10.96□□□□□ -0.65
CCDC28B-202ENST00000421922 KRTAP3-3Q9BYR6 98 aa10.96□□□□□ -0.65
CCDC28B-202ENST00000421922 KRTAP3-2Q9BYR7 98 aa10.96□□□□□ -0.65
CCDC28B-202ENST00000421922 CHTF8P0CG12 524 aa10.95□□□□□ -0.66
CCDC28B-202ENST00000421922 PSMB2P49721 201 aa10.95□□□□□ -0.66
CCDC28B-202ENST00000421922 Q8NDZ9 215 aa10.95□□□□□ -0.66
CCDC28B-202ENST00000421922 TMEM126AQ9H061 195 aa10.95□□□□□ -0.66
CCDC28B-202ENST00000421922 C9orf118A6NHY6 69 aa10.94□□□□□ -0.66
CCDC28B-202ENST00000421922 TSPAN13O95857 204 aa10.94□□□□□ -0.66
CCDC28B-202ENST00000421922 KRTAP10-2P60368 255 aa10.94□□□□□ -0.66
CCDC28B-202ENST00000421922 SERTAD4-AS1Q5TG53 156 aa10.94□□□□□ -0.66
CCDC28B-202ENST00000421922 DNAH17Q9UFH2 4485 aa10.94□□□□□ -0.66
CCDC28B-202ENST00000421922 FAM168BA1KXE4 195 aa10.93□□□□□ -0.66
CCDC28B-202ENST00000421922 H3BUT2 72 aa10.93□□□□□ -0.66
CCDC28B-202ENST00000421922 CBY1Q9Y3M2 126 aa10.93□□□□□ -0.66
CCDC28B-202ENST00000421922 IGLV5-37A0A075B6J1 123 aa10.92□□□□□ -0.66
CCDC28B-202ENST00000421922 LYRM7Q5U5X0 104 aa10.92□□□□□ -0.66
CCDC28B-202ENST00000421922 M0QXV9 152 aa10.92□□□□□ -0.66
CCDC28B-202ENST00000421922 NAA38Q9BRA0 125 aaKnown RBP10.92□□□□□ -0.66
CCDC28B-202ENST00000421922 COX6CP09669 75 aa10.91□□□□□ -0.66
CCDC28B-202ENST00000421922 SPACA4Q8TDM5 124 aa10.91□□□□□ -0.66
CCDC28B-202ENST00000421922 C22orf24Q9Y442 160 aa10.91□□□□□ -0.66
CCDC28B-202ENST00000421922 TRBV10-3A0A0K0K1G6 114 aa10.9□□□□□ -0.66
CCDC28B-202ENST00000421922 GAGE10A6NGK3 116 aa10.9□□□□□ -0.66
CCDC28B-202ENST00000421922 SCGB1C2P0DMR2 95 aa10.9□□□□□ -0.66
CCDC28B-202ENST00000421922 MRPL55Q7Z7F7 128 aaKnown RBP10.9□□□□□ -0.66
CCDC28B-202ENST00000421922 C7orf33Q8WU49 177 aa10.89□□□□□ -0.67
CCDC28B-202ENST00000421922 A0A1W2PNN7 141 aa10.88□□□□□ -0.67
CCDC28B-202ENST00000421922 IGLV6-57P01721 117 aa10.88□□□□□ -0.67
CCDC28B-202ENST00000421922 FABP2P12104 132 aa10.88□□□□□ -0.67
CCDC28B-202ENST00000421922 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.88□□□□□ -0.67
CCDC28B-202ENST00000421922 TRAV23DV6A0A075B6W5 121 aa10.87□□□□□ -0.67
CCDC28B-202ENST00000421922 SMIM11BQ8TCY0 68 aa10.87□□□□□ -0.67
CCDC28B-202ENST00000421922 PCLOQ9Y6V0 5065 aa10.86□□□□□ -0.67
CCDC28B-202ENST00000421922 A0A1W2PPM0 123 aa10.86□□□□□ -0.67
CCDC28B-202ENST00000421922 PANO1I0J062 215 aa10.85□□□□□ -0.67
CCDC28B-202ENST00000421922 TRIAP1O43715 76 aa10.85□□□□□ -0.67
CCDC28B-202ENST00000421922 RPL28P46779 137 aaKnown RBP10.85□□□□□ -0.67
CCDC28B-202ENST00000421922 UBE2BP63146 152 aa10.85□□□□□ -0.67
CCDC28B-202ENST00000421922 LINC00167Q96N53 147 aa10.85□□□□□ -0.67
CCDC28B-202ENST00000421922 VAMP3Q15836 100 aa10.84□□□□□ -0.67
CCDC28B-202ENST00000421922 A0A087WYN8 130 aa10.84□□□□□ -0.67
CCDC28B-202ENST00000421922 RPL37AP8A6NKH3 93 aa10.84□□□□□ -0.67
CCDC28B-202ENST00000421922 KRTAP7-1Q8IUC3 87 aa10.84□□□□□ -0.67
CCDC28B-202ENST00000421922 DIRC1Q969H9 104 aa10.84□□□□□ -0.67
CCDC28B-202ENST00000421922 HECTD4Q9Y4D8 3996 aa10.82□□□□□ -0.68
CCDC28B-202ENST00000421922 A0A1B0GV90 55 aa10.82□□□□□ -0.68
CCDC28B-202ENST00000421922 PRYO14603 147 aa10.82□□□□□ -0.68
CCDC28B-202ENST00000421922 IGLV1-50A0A075B6I6 118 aa10.81□□□□□ -0.68
CCDC28B-202ENST00000421922 ZNF73O43830 326 aaPredicted RBP10.81□□□□□ -0.68
CCDC28B-202ENST00000421922 KRTAP10-1P60331 282 aa10.81□□□□□ -0.68
CCDC28B-202ENST00000421922 C6orf99Q4VX62 202 aa10.81□□□□□ -0.68
CCDC28B-202ENST00000421922 PHF5AQ7RTV0 110 aaKnown RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms