RNA–Protein interactions for RNA: ENST00000399523.5

UFD1-202, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 1 (best) BASIC

Gene UFD1, Length 1,007 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-202ENST00000399523 G0S2P27469 103 aa9.83□□□□□ -0.84
UFD1-202ENST00000399523 TOMM6Q96B49 74 aa9.83□□□□□ -0.84
UFD1-202ENST00000399523 ERASQ7Z444 233 aa9.82□□□□□ -0.84
UFD1-202ENST00000399523 NXT2Q9NPJ8 142 aaKnown RBP9.82□□□□□ -0.84
UFD1-202ENST00000399523 C9JQL5 133 aa9.81□□□□□ -0.84
UFD1-202ENST00000399523 SSBP3-AS1Q7Z2R9 100 aa9.81□□□□□ -0.84
UFD1-202ENST00000399523 COX17Q14061 63 aa9.8□□□□□ -0.84
UFD1-202ENST00000399523 SMCR5Q8TEV8 140 aa9.8□□□□□ -0.84
UFD1-202ENST00000399523 MRPL18Q9H0U6 180 aaKnown RBP9.8□□□□□ -0.84
UFD1-202ENST00000399523 ERG28Q9UKR5 140 aa9.8□□□□□ -0.84
UFD1-202ENST00000399523 MOBPQ13875 183 aa9.79□□□□□ -0.84
UFD1-202ENST00000399523 SSPOA2VEC9 5147 aa9.78□□□□□ -0.84
UFD1-202ENST00000399523 AKAP14Q86UN6 197 aa9.78□□□□□ -0.84
UFD1-202ENST00000399523 SCGB3A1Q96QR1 104 aa9.78□□□□□ -0.84
UFD1-202ENST00000399523 CST9LQ9H4G1 147 aa9.78□□□□□ -0.84
UFD1-202ENST00000399523 ADCYAP1P18509 176 aa9.77□□□□□ -0.85
UFD1-202ENST00000399523 IGLV5-39A0A0G2JS06 123 aa9.76□□□□□ -0.85
UFD1-202ENST00000399523 IGLV9-49A0A0B4J1Y8 123 aa9.75□□□□□ -0.85
UFD1-202ENST00000399523 H3BRM9 83 aa9.75□□□□□ -0.85
UFD1-202ENST00000399523 SPRR1AP35321 89 aa9.75□□□□□ -0.85
UFD1-202ENST00000399523 GAGE2AQ6NT46 116 aa9.75□□□□□ -0.85
UFD1-202ENST00000399523 KRTAP4-16G5E9R7 235 aaPredicted RBP9.74□□□□□ -0.85
UFD1-202ENST00000399523 PRYO14603 147 aa9.74□□□□□ -0.85
UFD1-202ENST00000399523 KCNQ1DNQ9H478 68 aa9.72□□□□□ -0.85
UFD1-202ENST00000399523 USH2AO75445 5202 aa9.72□□□□□ -0.85
UFD1-202ENST00000399523 PMVKQ15126 192 aa9.71□□□□□ -0.86
UFD1-202ENST00000399523 ZNF625Q96I27 306 aaPredicted RBP9.71□□□□□ -0.86
UFD1-202ENST00000399523 ETDCA0A1B0GVM5 59 aa9.69□□□□□ -0.86
UFD1-202ENST00000399523 LINC01549A6NIU2 74 aa9.69□□□□□ -0.86
UFD1-202ENST00000399523 PEA15Q15121 130 aa9.68□□□□□ -0.86
UFD1-202ENST00000399523 COX6B2Q6YFQ2 88 aa9.68□□□□□ -0.86
UFD1-202ENST00000399523 ERC2-IT1O76042 136 aa9.67□□□□□ -0.86
UFD1-202ENST00000399523 IGLC3P0DOY3 106 aa9.67□□□□□ -0.86
UFD1-202ENST00000399523 C9orf92A6NGG3 77 aa9.66□□□□□ -0.86
UFD1-202ENST00000399523 SFTA2Q6UW10 78 aa9.66□□□□□ -0.86
UFD1-202ENST00000399523 ZNF22P17026 224 aaPredicted RBP9.65□□□□□ -0.86
UFD1-202ENST00000399523 FCGBPQ9Y6R7 5405 aaPredicted RBP9.65□□□□□ -0.87
UFD1-202ENST00000399523 LINC01546A6NGU7 62 aa9.64□□□□□ -0.87
UFD1-202ENST00000399523 B5MCH6 92 aa9.63□□□□□ -0.87
UFD1-202ENST00000399523 LINC00158P58513 81 aa9.63□□□□□ -0.87
UFD1-202ENST00000399523 TRBV10-3A0A0K0K1G6 114 aa9.6□□□□□ -0.87
UFD1-202ENST00000399523 NCR3O14931 201 aa9.6□□□□□ -0.87
UFD1-202ENST00000399523 KIAA1644Q3SXP7 199 aa9.6□□□□□ -0.87
UFD1-202ENST00000399523 BOD1L2Q8IYS8 172 aa9.6□□□□□ -0.87
UFD1-202ENST00000399523 Q9BRP9 147 aa9.6□□□□□ -0.87
UFD1-202ENST00000399523 TRAV9-1A0A075B6T8 112 aa9.59□□□□□ -0.87
UFD1-202ENST00000399523 C9orf153Q5TBE3 101 aa9.59□□□□□ -0.87
UFD1-202ENST00000399523 A0A0U1RRA0 63 aa9.58□□□□□ -0.88
UFD1-202ENST00000399523 ANAPC16Q96DE5 110 aa9.58□□□□□ -0.88
UFD1-202ENST00000399523 IGLV6-57P01721 117 aa9.57□□□□□ -0.88
UFD1-202ENST00000399523 LIMD2Q9BT23 127 aa9.57□□□□□ -0.88
UFD1-202ENST00000399523 MT-ND4LP03901 98 aa9.56□□□□□ -0.88
UFD1-202ENST00000399523 CFC1P0CG37 223 aa9.55□□□□□ -0.88
UFD1-202ENST00000399523 NDUFA6P56556 154 aa9.54□□□□□ -0.88
UFD1-202ENST00000399523 S100A12P80511 92 aa9.54□□□□□ -0.88
UFD1-202ENST00000399523 Q6ZRX8 168 aa9.54□□□□□ -0.88
UFD1-202ENST00000399523 C11orf86A6NJI1 115 aa9.52□□□□□ -0.89
UFD1-202ENST00000399523 ATP6V1G1O75348 118 aa9.52□□□□□ -0.89
UFD1-202ENST00000399523 SMIM13P0DJ93 91 aa9.52□□□□□ -0.89
UFD1-202ENST00000399523 RPL37P61927 97 aaKnown RBP9.52□□□□□ -0.89
UFD1-202ENST00000399523 TMEM170BQ5T4T1 132 aa9.51□□□□□ -0.89
UFD1-202ENST00000399523 FA2HQ7L5A8 372 aa9.5□□□□□ -0.89
UFD1-202ENST00000399523 MIR7-3HGQ8N6C7 128 aa9.5□□□□□ -0.89
UFD1-202ENST00000399523 KRTAP9-8Q9BYQ0 159 aa9.5□□□□□ -0.89
UFD1-202ENST00000399523 HRCT1Q6UXD1 115 aa9.48□□□□□ -0.89
UFD1-202ENST00000399523 A0A096LNJ9 63 aa9.47□□□□□ -0.89
UFD1-202ENST00000399523 DDTP30046 118 aa9.47□□□□□ -0.89
UFD1-202ENST00000399523 SMCO4Q9NRQ5 59 aa9.47□□□□□ -0.89
UFD1-202ENST00000399523 SYNE2Q8WXH0 6885 aaKnown RBP9.46□□□□□ -0.9
UFD1-202ENST00000399523 ST20-AS1Q8NBB2 130 aa9.46□□□□□ -0.9
UFD1-202ENST00000399523 C5orf52A6NGY3 159 aa9.45□□□□□ -0.9
UFD1-202ENST00000399523 JOSD1Q15040 202 aaPredicted RBP9.45□□□□□ -0.9
UFD1-202ENST00000399523 MEIG1Q5JSS6 88 aa9.45□□□□□ -0.9
UFD1-202ENST00000399523 KRTAP19-1Q8IUB9 90 aa9.45□□□□□ -0.9
UFD1-202ENST00000399523 TRBV10-2A0A0K0K1G8 114 aa9.44□□□□□ -0.9
UFD1-202ENST00000399523 BAGE3Q86Y29 109 aa9.44□□□□□ -0.9
UFD1-202ENST00000399523 TMEM223A0PJW6 202 aa9.43□□□□□ -0.9
UFD1-202ENST00000399523 LOC107984156A0A0G2JMH3 177 aa9.42□□□□□ -0.9
UFD1-202ENST00000399523 LINC00587B1AMM8 73 aa9.42□□□□□ -0.9
UFD1-202ENST00000399523 HERV-K104P63124 156 aa9.42□□□□□ -0.9
UFD1-202ENST00000399523 ARL17AQ8IVW1 177 aa9.42□□□□□ -0.9
UFD1-202ENST00000399523 MACF1Q9UPN3 7388 aaKnown RBP9.42□□□□□ -0.9
UFD1-202ENST00000399523 SPRR1BP22528 89 aa9.4□□□□□ -0.9
UFD1-202ENST00000399523 CD164Q04900 197 aa9.4□□□□□ -0.9
UFD1-202ENST00000399523 Q5XG85 94 aa9.39□□□□□ -0.91
UFD1-202ENST00000399523 Q6Q795 121 aa9.39□□□□□ -0.91
UFD1-202ENST00000399523 HBDP02042 147 aa9.38□□□□□ -0.91
UFD1-202ENST00000399523 C1orf195Q5TG92 126 aa9.38□□□□□ -0.91
UFD1-202ENST00000399523 SLC25A34Q6PIV7 304 aa9.38□□□□□ -0.91
UFD1-202ENST00000399523 MAP1LC3CQ9BXW4 147 aa9.38□□□□□ -0.91
UFD1-202ENST00000399523 URB1-AS1Q96HZ7 61 aa9.37□□□□□ -0.91
UFD1-202ENST00000399523 CHTOPQ9Y3Y2 248 aaKnown RBP9.37□□□□□ -0.91
UFD1-202ENST00000399523 hCG_2014768A0A024R1R8 64 aa9.36□□□□□ -0.91
UFD1-202ENST00000399523 SPANXB1Q9NS25 103 aaPredicted RBP9.36□□□□□ -0.91
UFD1-202ENST00000399523 TRAV23DV6A0A075B6W5 121 aa9.35□□□□□ -0.91
UFD1-202ENST00000399523 ZNF73O43830 326 aaPredicted RBP9.34□□□□□ -0.91
UFD1-202ENST00000399523 LINC00614P0C842 121 aa9.34□□□□□ -0.91
UFD1-202ENST00000399523 PMCHL1Q16048 86 aa9.34□□□□□ -0.91
UFD1-202ENST00000399523 S100A7L2Q5SY68 101 aa9.34□□□□□ -0.91
UFD1-202ENST00000399523 LAMTOR3Q9UHA4 124 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms