RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 A0A096LNJ9 63 aa9.96□□□□□ -0.81
TRAF1-201ENST00000373887 A0A1B0GUV1 79 aa9.96□□□□□ -0.81
TRAF1-201ENST00000373887 Q8N2B8 174 aa9.95□□□□□ -0.82
TRAF1-201ENST00000373887 CEP295Q9C0D2 2601 aa9.95□□□□□ -0.82
TRAF1-201ENST00000373887 PRO0628Q9UI54 55 aa9.95□□□□□ -0.82
TRAF1-201ENST00000373887 ATP11AUNQ6ZP68 121 aa9.94□□□□□ -0.82
TRAF1-201ENST00000373887 MYO9AB2RTY4 2548 aa9.94□□□□□ -0.82
TRAF1-201ENST00000373887 SPTBN4Q9H254 2564 aa9.93□□□□□ -0.82
TRAF1-201ENST00000373887 CDIP1Q9H305 208 aa9.93□□□□□ -0.82
TRAF1-201ENST00000373887 TLN2Q9Y4G6 2542 aa9.93□□□□□ -0.82
TRAF1-201ENST00000373887 MUC4Q99102 2169 aa9.92□□□□□ -0.82
TRAF1-201ENST00000373887 CHD8Q9HCK8 2581 aa9.92□□□□□ -0.82
TRAF1-201ENST00000373887 ZNF462Q96JM2 2506 aa9.91□□□□□ -0.82
TRAF1-201ENST00000373887 CHTF8P0CG12 524 aa9.91□□□□□ -0.82
TRAF1-201ENST00000373887 FN1P02751 2386 aaKnown RBP9.9□□□□□ -0.82
TRAF1-201ENST00000373887 LINC00167Q96N53 147 aa9.9□□□□□ -0.82
TRAF1-201ENST00000373887 RPL37AP61513 92 aaKnown RBP9.89□□□□□ -0.83
TRAF1-201ENST00000373887 COL27A1Q8IZC6 1860 aaPredicted RBP9.89□□□□□ -0.83
TRAF1-201ENST00000373887 LINC01561Q8N1V8 128 aa9.89□□□□□ -0.83
TRAF1-201ENST00000373887 TP53AIP1Q9HCN2 124 aa9.88□□□□□ -0.83
TRAF1-201ENST00000373887 PTPRBP23467 1997 aa9.88□□□□□ -0.83
TRAF1-201ENST00000373887 C11orf72Q8NBR9 251 aa9.88□□□□□ -0.83
TRAF1-201ENST00000373887 PHF5AQ7RTV0 110 aaKnown RBP9.87□□□□□ -0.83
TRAF1-201ENST00000373887 SSBP3-AS1Q7Z2R9 100 aa9.87□□□□□ -0.83
TRAF1-201ENST00000373887 C8orf87E5RJ46 101 aa9.86□□□□□ -0.83
TRAF1-201ENST00000373887 LINC00313P59037 77 aa9.86□□□□□ -0.83
TRAF1-201ENST00000373887 FAM218AQ96MZ4 157 aa9.85□□□□□ -0.83
TRAF1-201ENST00000373887 LINC00315P59091 139 aa9.83□□□□□ -0.84
TRAF1-201ENST00000373887 LINC00476Q8WZB0 136 aa9.83□□□□□ -0.84
TRAF1-201ENST00000373887 Q96NJ1 140 aa9.82□□□□□ -0.84
TRAF1-201ENST00000373887 DNAH12Q6ZR08 3092 aa9.82□□□□□ -0.84
TRAF1-201ENST00000373887 COX8CQ7Z4L0 72 aa9.82□□□□□ -0.84
TRAF1-201ENST00000373887 USP9XQ93008 2570 aaPredicted RBP9.81□□□□□ -0.84
TRAF1-201ENST00000373887 ST20-AS1Q8NBB2 130 aa9.81□□□□□ -0.84
TRAF1-201ENST00000373887 C16orf90A8MZG2 172 aa9.81□□□□□ -0.84
TRAF1-201ENST00000373887 TYMSOSQ8TAI1 123 aa9.8□□□□□ -0.84
TRAF1-201ENST00000373887 IGLV5-39A0A0G2JS06 123 aa9.8□□□□□ -0.84
TRAF1-201ENST00000373887 TM2D3Q9BRN9 247 aa9.8□□□□□ -0.84
TRAF1-201ENST00000373887 SETD2Q9BYW2 2564 aaPredicted RBP9.79□□□□□ -0.84
TRAF1-201ENST00000373887 ELOF1P60002 83 aaKnown RBP9.79□□□□□ -0.84
TRAF1-201ENST00000373887 SMCPP49901 116 aaPredicted RBP9.78□□□□□ -0.84
TRAF1-201ENST00000373887 RTL8CO15255 209 aa9.78□□□□□ -0.84
TRAF1-201ENST00000373887 Q6ZQT0 140 aa9.78□□□□□ -0.84
TRAF1-201ENST00000373887 EPM2AB3EWF7 344 aa9.78□□□□□ -0.84
TRAF1-201ENST00000373887 TRAV22A0A0B4J277 110 aa9.77□□□□□ -0.84
TRAF1-201ENST00000373887 VPREB1P12018 145 aa9.77□□□□□ -0.84
TRAF1-201ENST00000373887 PCSK5Q92824 1860 aa9.77□□□□□ -0.85
TRAF1-201ENST00000373887 IGHV3OR16-9A0A0B4J2B5 98 aa9.77□□□□□ -0.85
TRAF1-201ENST00000373887 KIF25-AS1Q9Y6Z4 181 aa9.77□□□□□ -0.85
TRAF1-201ENST00000373887 APLNQ9ULZ1 77 aa9.77□□□□□ -0.85
TRAF1-201ENST00000373887 Q8NBF4 154 aa9.76□□□□□ -0.85
TRAF1-201ENST00000373887 LINC00588Q9Y4M8 146 aa9.75□□□□□ -0.85
TRAF1-201ENST00000373887 FAM229AH3BQW9 127 aa9.75□□□□□ -0.85
TRAF1-201ENST00000373887 NBDYA0A0U1RRE5 68 aa9.75□□□□□ -0.85
TRAF1-201ENST00000373887 WWC2-AS2Q96NR7 200 aa9.74□□□□□ -0.85
TRAF1-201ENST00000373887 Q6ZRX8 168 aa9.73□□□□□ -0.85
TRAF1-201ENST00000373887 LINC01600Q96MT4 127 aa9.73□□□□□ -0.85
TRAF1-201ENST00000373887 POLQO75417 2590 aa9.73□□□□□ -0.85
TRAF1-201ENST00000373887 FASNP49327 2511 aaKnown RBP9.73□□□□□ -0.85
TRAF1-201ENST00000373887 KRTAP10-11P60412 298 aa9.73□□□□□ -0.85
TRAF1-201ENST00000373887 Q8NAQ8 132 aa9.72□□□□□ -0.85
TRAF1-201ENST00000373887 FAM19A4Q96LR4 140 aa9.71□□□□□ -0.85
TRAF1-201ENST00000373887 ANKRD17O75179 2603 aaKnown RBP9.71□□□□□ -0.85
TRAF1-201ENST00000373887 H3BPC8 53 aa9.7□□□□□ -0.86
TRAF1-201ENST00000373887 USP9YO00507 2555 aaPredicted RBP9.69□□□□□ -0.86
TRAF1-201ENST00000373887 LINC01546A6NGU7 62 aa9.69□□□□□ -0.86
TRAF1-201ENST00000373887 Q6ZRP5 223 aa9.69□□□□□ -0.86
TRAF1-201ENST00000373887 LOC110117498A0A087WWA1 95 aa9.69□□□□□ -0.86
TRAF1-201ENST00000373887 A8MUN3 132 aa9.68□□□□□ -0.86
TRAF1-201ENST00000373887 COA5Q86WW8 74 aa9.68□□□□□ -0.86
TRAF1-201ENST00000373887 BCE1O60756 84 aa9.68□□□□□ -0.86
TRAF1-201ENST00000373887 K7EIL1 84 aa9.67□□□□□ -0.86
TRAF1-201ENST00000373887 FAM168BA1KXE4 195 aa9.67□□□□□ -0.86
TRAF1-201ENST00000373887 TRBV7-4A0A0J9YYF1 115 aa9.66□□□□□ -0.86
TRAF1-201ENST00000373887 COX6B2Q6YFQ2 88 aa9.66□□□□□ -0.86
TRAF1-201ENST00000373887 KRTAP10-3P60369 221 aa9.66□□□□□ -0.86
TRAF1-201ENST00000373887 K7EQZ3 153 aa9.66□□□□□ -0.86
TRAF1-201ENST00000373887 ACANP16112 2415 aa9.66□□□□□ -0.86
TRAF1-201ENST00000373887 J3QL48 77 aa9.65□□□□□ -0.86
TRAF1-201ENST00000373887 RPS28P62857 69 aaKnown RBP9.65□□□□□ -0.86
TRAF1-201ENST00000373887 CRIPTQ9P021 101 aa9.65□□□□□ -0.87
TRAF1-201ENST00000373887 MTORP42345 2549 aa9.65□□□□□ -0.87
TRAF1-201ENST00000373887 PRO0461Q9UI25 63 aa9.64□□□□□ -0.87
TRAF1-201ENST00000373887 LOC101927531A0A1B0GV80 90 aa9.64□□□□□ -0.87
TRAF1-201ENST00000373887 DNAH10OSP0CZ25 163 aa9.63□□□□□ -0.87
TRAF1-201ENST00000373887 DSCR10P59022 87 aa9.63□□□□□ -0.87
TRAF1-201ENST00000373887 IGLV5-45A0A087WSX0 123 aa9.62□□□□□ -0.87
TRAF1-201ENST00000373887 A8MWP4 228 aa9.62□□□□□ -0.87
TRAF1-201ENST00000373887 A0A1B0GW54 56 aa9.62□□□□□ -0.87
TRAF1-201ENST00000373887 H3BNG1 76 aa9.62□□□□□ -0.87
TRAF1-201ENST00000373887 IGLV6-57P01721 117 aa9.62□□□□□ -0.87
TRAF1-201ENST00000373887 MRPL34Q9BQ48 92 aaKnown RBP9.62□□□□□ -0.87
TRAF1-201ENST00000373887 PKD1L2Q7Z442 2459 aa9.61□□□□□ -0.87
TRAF1-201ENST00000373887 C9orf92A6NGG3 77 aa9.61□□□□□ -0.87
TRAF1-201ENST00000373887 UQCR11O14957 56 aa9.6□□□□□ -0.87
TRAF1-201ENST00000373887 MIR22HGQ0VDD5 57 aa9.58□□□□□ -0.88
TRAF1-201ENST00000373887 SMR3BP02814 79 aaPredicted RBP9.57□□□□□ -0.88
TRAF1-201ENST00000373887 C9orf129Q5T035 196 aaKnown RBP9.56□□□□□ -0.88
TRAF1-201ENST00000373887 C5orf42Q9H799 3197 aa9.55□□□□□ -0.88
TRAF1-201ENST00000373887 GVQW2A0A096LPI5 108 aaPredicted RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms