RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 BPTFQ12830 3046 aa7.6□□□□□ -1.19
CLIP1-203ENST00000361654 RPL37AP61513 92 aaKnown RBP7.6□□□□□ -1.19
CLIP1-203ENST00000361654 PTPRSQ13332 1948 aa7.6□□□□□ -1.19
CLIP1-203ENST00000361654 ADAMTSL4-AS1Q5T5F5 129 aa7.59□□□□□ -1.19
CLIP1-203ENST00000361654 C1orf195Q5TG92 126 aa7.59□□□□□ -1.19
CLIP1-203ENST00000361654 TSPEAR-AS2P59090 65 aa7.58□□□□□ -1.2
CLIP1-203ENST00000361654 C1orf64Q8NEQ6 169 aa7.58□□□□□ -1.2
CLIP1-203ENST00000361654 KIAA0087Q14695 138 aa7.57□□□□□ -1.2
CLIP1-203ENST00000361654 SPATA3Q8NHX4 192 aa7.57□□□□□ -1.2
CLIP1-203ENST00000361654 SMCPP49901 116 aaPredicted RBP7.57□□□□□ -1.2
CLIP1-203ENST00000361654 TET2Q6N021 2002 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-203ENST00000361654 A0A1B0GW54 56 aa7.56□□□□□ -1.2
CLIP1-203ENST00000361654 PRO0461Q9UI25 63 aa7.56□□□□□ -1.2
CLIP1-203ENST00000361654 IGHV3OR16-9A0A0B4J2B5 98 aa7.56□□□□□ -1.2
CLIP1-203ENST00000361654 LINC00313P59037 77 aa7.56□□□□□ -1.2
CLIP1-203ENST00000361654 PHF5AQ7RTV0 110 aaKnown RBP7.56□□□□□ -1.2
CLIP1-203ENST00000361654 LINC00588Q9Y4M8 146 aa7.55□□□□□ -1.2
CLIP1-203ENST00000361654 MTORP42345 2549 aa7.55□□□□□ -1.2
CLIP1-203ENST00000361654 A8MTW9 85 aa7.55□□□□□ -1.2
CLIP1-203ENST00000361654 C6orf48Q9UBA6 75 aa7.55□□□□□ -1.2
CLIP1-203ENST00000361654 USP9YO00507 2555 aaPredicted RBP7.55□□□□□ -1.2
CLIP1-203ENST00000361654 PKD1L2Q7Z442 2459 aa7.55□□□□□ -1.2
CLIP1-203ENST00000361654 ANKRD11Q6UB99 2663 aaPredicted RBP7.54□□□□□ -1.2
CLIP1-203ENST00000361654 SETD2Q9BYW2 2564 aaPredicted RBP7.54□□□□□ -1.2
CLIP1-203ENST00000361654 ACYP2P14621 99 aa7.54□□□□□ -1.2
CLIP1-203ENST00000361654 AGRNO00468 2067 aa7.54□□□□□ -1.2
CLIP1-203ENST00000361654 IGLV5-39A0A0G2JS06 123 aa7.53□□□□□ -1.2
CLIP1-203ENST00000361654 A0A087WVE0 104 aa7.53□□□□□ -1.2
CLIP1-203ENST00000361654 CXCL6P80162 114 aa7.53□□□□□ -1.2
CLIP1-203ENST00000361654 BCE1O60756 84 aa7.52□□□□□ -1.2
CLIP1-203ENST00000361654 EPM2AB3EWF7 344 aa7.52□□□□□ -1.21
CLIP1-203ENST00000361654 Q8NAQ8 132 aa7.52□□□□□ -1.21
CLIP1-203ENST00000361654 TMEM254Q8TBM7 123 aa7.52□□□□□ -1.21
CLIP1-203ENST00000361654 CEP295Q9C0D2 2601 aa7.51□□□□□ -1.21
CLIP1-203ENST00000361654 WDR87Q6ZQQ6 2873 aa7.51□□□□□ -1.21
CLIP1-203ENST00000361654 A0A1B0GU69 56 aa7.5□□□□□ -1.21
CLIP1-203ENST00000361654 DNAH12Q6ZR08 3092 aa7.5□□□□□ -1.21
CLIP1-203ENST00000361654 CHTF8P0CG12 524 aa7.5□□□□□ -1.21
CLIP1-203ENST00000361654 PMAIP1Q13794 54 aa7.5□□□□□ -1.21
CLIP1-203ENST00000361654 LINC00336Q6ZUF6 198 aa7.5□□□□□ -1.21
CLIP1-203ENST00000361654 Q96NJ1 140 aa7.5□□□□□ -1.21
CLIP1-203ENST00000361654 SOSTDC1Q6X4U4 206 aa7.49□□□□□ -1.21
CLIP1-203ENST00000361654 Q6ZRX8 168 aa7.49□□□□□ -1.21
CLIP1-203ENST00000361654 GVQW2A0A096LPI5 108 aaPredicted RBP7.49□□□□□ -1.21
CLIP1-203ENST00000361654 SPAG11AQ6PDA7 123 aa7.49□□□□□ -1.21
CLIP1-203ENST00000361654 DNAH10OSP0CZ25 163 aa7.49□□□□□ -1.21
CLIP1-203ENST00000361654 LINC01546A6NGU7 62 aa7.48□□□□□ -1.21
CLIP1-203ENST00000361654 C8orf87E5RJ46 101 aa7.48□□□□□ -1.21
CLIP1-203ENST00000361654 POLQO75417 2590 aa7.47□□□□□ -1.21
CLIP1-203ENST00000361654 ELOF1P60002 83 aaKnown RBP7.47□□□□□ -1.21
CLIP1-203ENST00000361654 PCNTO95613 3336 aa7.47□□□□□ -1.21
CLIP1-203ENST00000361654 LINC00476Q8WZB0 136 aa7.46□□□□□ -1.22
CLIP1-203ENST00000361654 FAM19A4Q96LR4 140 aa7.46□□□□□ -1.22
CLIP1-203ENST00000361654 H3BPC8 53 aa7.46□□□□□ -1.22
CLIP1-203ENST00000361654 LINC00846Q9NV44 126 aa7.45□□□□□ -1.22
CLIP1-203ENST00000361654 K7EIL1 84 aa7.44□□□□□ -1.22
CLIP1-203ENST00000361654 SMIM29Q86T20 159 aa7.44□□□□□ -1.22
CLIP1-203ENST00000361654 SPTBN4Q9H254 2564 aa7.44□□□□□ -1.22
CLIP1-203ENST00000361654 PSPHP1O15172 72 aa7.44□□□□□ -1.22
CLIP1-203ENST00000361654 LINC00304Q8N9R0 145 aa7.44□□□□□ -1.22
CLIP1-203ENST00000361654 CENPFP49454 3210 aa7.43□□□□□ -1.22
CLIP1-203ENST00000361654 IGLV5-45A0A087WSX0 123 aa7.42□□□□□ -1.22
CLIP1-203ENST00000361654 ST20-AS1Q8NBB2 130 aa7.42□□□□□ -1.22
CLIP1-203ENST00000361654 TRAV22A0A0B4J277 110 aa7.41□□□□□ -1.22
CLIP1-203ENST00000361654 SSBP3-AS1Q7Z2R9 100 aa7.4□□□□□ -1.23
CLIP1-203ENST00000361654 LOC101927531A0A1B0GV80 90 aa7.39□□□□□ -1.23
CLIP1-203ENST00000361654 CEP350Q5VT06 3117 aa7.38□□□□□ -1.23
CLIP1-203ENST00000361654 C19orf73Q9NVV2 129 aa7.36□□□□□ -1.23
CLIP1-203ENST00000361654 Q9UF83 564 aa7.36□□□□□ -1.23
CLIP1-203ENST00000361654 RBM12B-AS1Q9P1G2 102 aa7.36□□□□□ -1.23
CLIP1-203ENST00000361654 A0A087WTM6 91 aa7.36□□□□□ -1.23
CLIP1-203ENST00000361654 TRBV7-4A0A0J9YYF1 115 aa7.36□□□□□ -1.23
CLIP1-203ENST00000361654 SERTAD4-AS1Q5TG53 156 aa7.36□□□□□ -1.23
CLIP1-203ENST00000361654 ZNF861PO60384 105 aa7.35□□□□□ -1.23
CLIP1-203ENST00000361654 KRTAP10-11P60412 298 aa7.35□□□□□ -1.23
CLIP1-203ENST00000361654 LOC110117498A0A087WWA1 95 aa7.34□□□□□ -1.23
CLIP1-203ENST00000361654 SMR3BP02814 79 aaPredicted RBP7.34□□□□□ -1.23
CLIP1-203ENST00000361654 C4orf26Q17RF5 130 aa7.34□□□□□ -1.23
CLIP1-203ENST00000361654 MRPL34Q9BQ48 92 aaKnown RBP7.34□□□□□ -1.23
CLIP1-203ENST00000361654 VPREB1P12018 145 aa7.34□□□□□ -1.23
CLIP1-203ENST00000361654 ACANP16112 2415 aa7.34□□□□□ -1.23
CLIP1-203ENST00000361654 COL4A2P08572 1712 aa7.33□□□□□ -1.24
CLIP1-203ENST00000361654 PTPRBP23467 1997 aa7.33□□□□□ -1.24
CLIP1-203ENST00000361654 A8MWP4 228 aa7.33□□□□□ -1.24
CLIP1-203ENST00000361654 A0A0C4DFX4 3053 aa7.32□□□□□ -1.24
CLIP1-203ENST00000361654 TM2D3Q9BRN9 247 aa7.32□□□□□ -1.24
CLIP1-203ENST00000361654 UTRNP46939 3433 aa7.32□□□□□ -1.24
CLIP1-203ENST00000361654 Q6ZQT0 140 aa7.31□□□□□ -1.24
CLIP1-203ENST00000361654 RPS28P62857 69 aaKnown RBP7.31□□□□□ -1.24
CLIP1-203ENST00000361654 FLNBO75369 2602 aaKnown RBP7.31□□□□□ -1.24
CLIP1-203ENST00000361654 IGLV1-50A0A075B6I6 118 aa7.31□□□□□ -1.24
CLIP1-203ENST00000361654 IGLV5-37A0A075B6J1 123 aa7.3□□□□□ -1.24
CLIP1-203ENST00000361654 ANKRD17O75179 2603 aaKnown RBP7.3□□□□□ -1.24
CLIP1-203ENST00000361654 KLK9Q2XQG4 91 aa7.3□□□□□ -1.24
CLIP1-203ENST00000361654 EPG5Q9HCE0 2579 aa7.29□□□□□ -1.24
CLIP1-203ENST00000361654 C9orf163Q8N9P6 203 aa7.29□□□□□ -1.24
CLIP1-203ENST00000361654 FAM168BA1KXE4 195 aa7.29□□□□□ -1.24
CLIP1-203ENST00000361654 KCNQ1DNQ9H478 68 aa7.28□□□□□ -1.24
CLIP1-203ENST00000361654 PRO0628Q9UI54 55 aa7.28□□□□□ -1.24
CLIP1-203ENST00000361654 C9orf92A6NGG3 77 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms