RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 RYR2Q92736 4967 aa6.08□□□□□ -1.44
USP4-202ENST00000351842 PKHD1P08F94 4074 aa6.08□□□□□ -1.44
USP4-202ENST00000351842 A0A087WZ39 114 aa6.08□□□□□ -1.44
USP4-202ENST00000351842 TMEM223A0PJW6 202 aa6.08□□□□□ -1.44
USP4-202ENST00000351842 C9JAW5 83 aa6.08□□□□□ -1.44
USP4-202ENST00000351842 C15orf56Q8N910 161 aa6.07□□□□□ -1.44
USP4-202ENST00000351842 OR13C6PQ8NH95 151 aa6.07□□□□□ -1.44
USP4-202ENST00000351842 PLEKHB2Q96CS7 222 aa6.07□□□□□ -1.44
USP4-202ENST00000351842 XAGE1AQ9HD64 81 aa6.07□□□□□ -1.44
USP4-202ENST00000351842 IGHV1-58A0A0C4DH39 117 aa6.06□□□□□ -1.44
USP4-202ENST00000351842 LINC00158P58513 81 aa6.06□□□□□ -1.44
USP4-202ENST00000351842 RPL18AQ02543 176 aaKnown RBP6.06□□□□□ -1.44
USP4-202ENST00000351842 Q6ZR54 194 aa6.06□□□□□ -1.44
USP4-202ENST00000351842 TEN1Q86WV5 123 aa6.06□□□□□ -1.44
USP4-202ENST00000351842 J3KT08 172 aa6.06□□□□□ -1.44
USP4-202ENST00000351842 RTL8CO15255 209 aa6.06□□□□□ -1.44
USP4-202ENST00000351842 Q6ZRU5 148 aa6.06□□□□□ -1.44
USP4-202ENST00000351842 KRTAP26-1Q6PEX3 210 aa6.06□□□□□ -1.44
USP4-202ENST00000351842 DNAH6Q9C0G6 4158 aa6.05□□□□□ -1.44
USP4-202ENST00000351842 LEPROTO15243 131 aa6.05□□□□□ -1.44
USP4-202ENST00000351842 Q6Q795 121 aa6.05□□□□□ -1.44
USP4-202ENST00000351842 SLPIP03973 132 aa6.04□□□□□ -1.44
USP4-202ENST00000351842 CHTF8P0CG12 524 aa6.04□□□□□ -1.44
USP4-202ENST00000351842 PSMB2P49721 201 aa6.04□□□□□ -1.44
USP4-202ENST00000351842 A0A087WTM6 91 aa6.04□□□□□ -1.44
USP4-202ENST00000351842 SYCNQ0VAF6 134 aa6.03□□□□□ -1.44
USP4-202ENST00000351842 Q6ZRN7 208 aaPredicted RBP6.03□□□□□ -1.44
USP4-202ENST00000351842 CFC1BP0CG36 223 aa6.03□□□□□ -1.44
USP4-202ENST00000351842 CFC1P0CG37 223 aa6.03□□□□□ -1.44
USP4-202ENST00000351842 KRTAP10-2P60368 255 aa6.03□□□□□ -1.44
USP4-202ENST00000351842 SRSF9Q13242 221 aaKnown RBP eCLIP6.03□□□□□ -1.44
USP4-202ENST00000351842 ALMS1Q8TCU4 4167 aa6.03□□□□□ -1.44
USP4-202ENST00000351842 NDUFA1O15239 70 aa6.03□□□□□ -1.44
USP4-202ENST00000351842 SFTA2Q6UW10 78 aa6.03□□□□□ -1.44
USP4-202ENST00000351842 A0A0B4J2C4 111 aa6.02□□□□□ -1.45
USP4-202ENST00000351842 LYRM7Q5U5X0 104 aa6.02□□□□□ -1.45
USP4-202ENST00000351842 DNAH11Q96DT5 4516 aa6.02□□□□□ -1.45
USP4-202ENST00000351842 IGLV5-45A0A087WSX0 123 aa6.02□□□□□ -1.45
USP4-202ENST00000351842 IGLV5-52A0A0A0MRZ9 124 aa6.02□□□□□ -1.45
USP4-202ENST00000351842 LOC107984156A0A0G2JMH3 177 aa6.02□□□□□ -1.45
USP4-202ENST00000351842 EIF4EBP3O60516 100 aaPredicted RBP6.02□□□□□ -1.45
USP4-202ENST00000351842 ARL17AQ8IVW1 177 aa6.02□□□□□ -1.45
USP4-202ENST00000351842 ANKRD29Q8N6D5 301 aa6.01□□□□□ -1.45
USP4-202ENST00000351842 C6orf48Q9UBA6 75 aa6.01□□□□□ -1.45
USP4-202ENST00000351842 LRCOL1A6NCL2 159 aa6.01□□□□□ -1.45
USP4-202ENST00000351842 KIAA0087Q14695 138 aa6.01□□□□□ -1.45
USP4-202ENST00000351842 C9orf153Q5TBE3 101 aa6.01□□□□□ -1.45
USP4-202ENST00000351842 FAM19A3Q7Z5A8 133 aa6.01□□□□□ -1.45
USP4-202ENST00000351842 LITAFQ99732 161 aa6.01□□□□□ -1.45
USP4-202ENST00000351842 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.01□□□□□ -1.45
USP4-202ENST00000351842 MIR7-3HGQ8N6C7 128 aa6.01□□□□□ -1.45
USP4-202ENST00000351842 SRRM2Q9UQ35 2752 aaKnown RBP6□□□□□ -1.45
USP4-202ENST00000351842 A0A1B0GX51 115 aa6□□□□□ -1.45
USP4-202ENST00000351842 PRR3P79522 188 aaKnown RBP6□□□□□ -1.45
USP4-202ENST00000351842 IGLV5-39A0A0G2JS06 123 aa6□□□□□ -1.45
USP4-202ENST00000351842 ADAMTSL4-AS1Q5T5F5 129 aa6□□□□□ -1.45
USP4-202ENST00000351842 Q8N814 137 aa6□□□□□ -1.45
USP4-202ENST00000351842 A0A0J9YXY3 114 aa5.99□□□□□ -1.45
USP4-202ENST00000351842 H7C2G1 150 aa5.99□□□□□ -1.45
USP4-202ENST00000351842 Q8IZM0 81 aa5.99□□□□□ -1.45
USP4-202ENST00000351842 SPANXDQ9BXN6 97 aa5.99□□□□□ -1.45
USP4-202ENST00000351842 SPANXCQ9NY87 97 aa5.99□□□□□ -1.45
USP4-202ENST00000351842 PRO1854Q9UHT4 67 aa5.99□□□□□ -1.45
USP4-202ENST00000351842 SEC61GP60059 68 aa5.99□□□□□ -1.45
USP4-202ENST00000351842 HRCT1Q6UXD1 115 aa5.99□□□□□ -1.45
USP4-202ENST00000351842 NTN5Q8WTR8 489 aaPredicted RBP5.99□□□□□ -1.45
USP4-202ENST00000351842 FAM168BA1KXE4 195 aa5.98□□□□□ -1.45
USP4-202ENST00000351842 TCL1BO95988 128 aa5.98□□□□□ -1.45
USP4-202ENST00000351842 SCGB1C2P0DMR2 95 aa5.98□□□□□ -1.45
USP4-202ENST00000351842 C4orf26Q17RF5 130 aa5.98□□□□□ -1.45
USP4-202ENST00000351842 HECTD4Q9Y4D8 3996 aa5.98□□□□□ -1.45
USP4-202ENST00000351842 TIMM17BO60830 172 aa5.98□□□□□ -1.45
USP4-202ENST00000351842 GVQW2A0A096LPI5 108 aaPredicted RBP5.97□□□□□ -1.45
USP4-202ENST00000351842 RPS28P62857 69 aaKnown RBP5.97□□□□□ -1.45
USP4-202ENST00000351842 Q6ZRP5 223 aa5.97□□□□□ -1.45
USP4-202ENST00000351842 DNAH17Q9UFH2 4485 aa5.97□□□□□ -1.45
USP4-202ENST00000351842 CIRBPQ14011 172 aaKnown RBP5.97□□□□□ -1.45
USP4-202ENST00000351842 FAT2Q9NYQ8 4349 aa5.97□□□□□ -1.45
USP4-202ENST00000351842 TRBV30A0A0K0K1B3 111 aa5.96□□□□□ -1.46
USP4-202ENST00000351842 A0A096LNI7 61 aa5.96□□□□□ -1.46
USP4-202ENST00000351842 C16orf90A8MZG2 172 aa5.96□□□□□ -1.46
USP4-202ENST00000351842 PANO1I0J062 215 aa5.96□□□□□ -1.46
USP4-202ENST00000351842 NCR3O14931 201 aa5.96□□□□□ -1.46
USP4-202ENST00000351842 C3orf22Q8N5N4 141 aa5.96□□□□□ -1.46
USP4-202ENST00000351842 FAM236AA0A1B0GUQ0 79 aa5.95□□□□□ -1.46
USP4-202ENST00000351842 FAM236BA0A1B0GV22 79 aa5.95□□□□□ -1.46
USP4-202ENST00000351842 C14orf177Q52M58 125 aa5.95□□□□□ -1.46
USP4-202ENST00000351842 EPPK1P58107 5090 aaKnown RBP5.95□□□□□ -1.46
USP4-202ENST00000351842 MUSTN1Q8IVN3 82 aa5.95□□□□□ -1.46
USP4-202ENST00000351842 SLC25A20O43772 301 aa5.94□□□□□ -1.46
USP4-202ENST00000351842 SND1-IT1Q9HBX3 110 aa5.94□□□□□ -1.46
USP4-202ENST00000351842 FLG2Q5D862 2391 aaPredicted RBP5.94□□□□□ -1.46
USP4-202ENST00000351842 RPL37AP8A6NKH3 93 aa5.93□□□□□ -1.46
USP4-202ENST00000351842 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.93□□□□□ -1.46
USP4-202ENST00000351842 IGKV2-28A0A075B6P5 120 aa5.93□□□□□ -1.46
USP4-202ENST00000351842 UQCRQO14949 82 aa5.93□□□□□ -1.46
USP4-202ENST00000351842 IGKV2D-28P01615 120 aa5.93□□□□□ -1.46
USP4-202ENST00000351842 RPL13AP40429 203 aaKnown RBP5.93□□□□□ -1.46
USP4-202ENST00000351842 CXCL5P42830 114 aa5.93□□□□□ -1.46
USP4-202ENST00000351842 GAGE2AQ6NT46 116 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms