RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 ZNF73O43830 326 aaPredicted RBP12.48□□□□□ -0.41
SMPD1-201ENST00000342245 CHCHD10Q8WYQ3 142 aaPredicted RBP12.47□□□□□ -0.41
SMPD1-201ENST00000342245 MRPL55Q7Z7F7 128 aaKnown RBP12.47□□□□□ -0.41
SMPD1-201ENST00000342245 ZCCHC13Q8WW36 166 aaKnown RBP12.46□□□□□ -0.41
SMPD1-201ENST00000342245 CSMD2Q7Z408 3487 aa12.46□□□□□ -0.42
SMPD1-201ENST00000342245 CFAP46Q8IYW2 2715 aa12.46□□□□□ -0.42
SMPD1-201ENST00000342245 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.45□□□□□ -0.42
SMPD1-201ENST00000342245 CLPSL2Q6UWE3 100 aa12.45□□□□□ -0.42
SMPD1-201ENST00000342245 PSPHP1O15172 72 aa12.45□□□□□ -0.42
SMPD1-201ENST00000342245 MAPK1IP1LQ8NDC0 245 aa12.45□□□□□ -0.42
SMPD1-201ENST00000342245 UBE2BP63146 152 aa12.44□□□□□ -0.42
SMPD1-201ENST00000342245 LRCOL1A6NCL2 159 aa12.43□□□□□ -0.42
SMPD1-201ENST00000342245 CSPG4Q6UVK1 2322 aa12.43□□□□□ -0.42
SMPD1-201ENST00000342245 FAM30AQ9NZY2 134 aa12.43□□□□□ -0.42
SMPD1-201ENST00000342245 GIG44P09565 113 aaPredicted RBP12.42□□□□□ -0.42
SMPD1-201ENST00000342245 SMIM29Q86T20 159 aa12.42□□□□□ -0.42
SMPD1-201ENST00000342245 CRYBG3Q68DQ2 2970 aa12.42□□□□□ -0.42
SMPD1-201ENST00000342245 GVQW2A0A096LPI5 108 aaPredicted RBP12.42□□□□□ -0.42
SMPD1-201ENST00000342245 NDUFB1O75438 58 aa12.42□□□□□ -0.42
SMPD1-201ENST00000342245 GYPEP15421 78 aa12.42□□□□□ -0.42
SMPD1-201ENST00000342245 Q6YL49 198 aa12.42□□□□□ -0.42
SMPD1-201ENST00000342245 UTP20O75691 2785 aaKnown RBP12.41□□□□□ -0.42
SMPD1-201ENST00000342245 SPAG11BQ08648 103 aa12.41□□□□□ -0.42
SMPD1-201ENST00000342245 FLNCQ14315 2725 aa12.4□□□□□ -0.42
SMPD1-201ENST00000342245 PSCAO43653 123 aa12.4□□□□□ -0.42
SMPD1-201ENST00000342245 UNQ6190/PRO20217Q6UXQ8 127 aa12.4□□□□□ -0.42
SMPD1-201ENST00000342245 KTN1-AS1Q86SY8 53 aa12.4□□□□□ -0.42
SMPD1-201ENST00000342245 SYCNQ0VAF6 134 aa12.39□□□□□ -0.43
SMPD1-201ENST00000342245 LINC00612Q8N6U2 182 aa12.39□□□□□ -0.43
SMPD1-201ENST00000342245 LINC01356Q8N9X3 169 aa12.39□□□□□ -0.43
SMPD1-201ENST00000342245 USP9XQ93008 2570 aaPredicted RBP12.39□□□□□ -0.43
SMPD1-201ENST00000342245 ETDCA0A1B0GVM5 59 aa12.39□□□□□ -0.43
SMPD1-201ENST00000342245 PRB1P04280 392 aa12.39□□□□□ -0.43
SMPD1-201ENST00000342245 REG3AQ06141 175 aa12.38□□□□□ -0.43
SMPD1-201ENST00000342245 PIEZO1Q92508 2521 aa12.38□□□□□ -0.43
SMPD1-201ENST00000342245 DOPEY1Q5JWR5 2465 aa12.38□□□□□ -0.43
SMPD1-201ENST00000342245 C10orf25Q5T742 122 aa12.37□□□□□ -0.43
SMPD1-201ENST00000342245 CSNK1G2-AS1Q8NCQ2 148 aa12.37□□□□□ -0.43
SMPD1-201ENST00000342245 UBE2AP49459 152 aa12.36□□□□□ -0.43
SMPD1-201ENST00000342245 DSCR9P59020 149 aa12.36□□□□□ -0.43
SMPD1-201ENST00000342245 CYSRT1A8MQ03 144 aa12.36□□□□□ -0.43
SMPD1-201ENST00000342245 LINC00588Q9Y4M8 146 aa12.35□□□□□ -0.43
SMPD1-201ENST00000342245 IGSF10Q6WRI0 2623 aa12.35□□□□□ -0.43
SMPD1-201ENST00000342245 LINC00528Q8N1L1 170 aa12.35□□□□□ -0.43
SMPD1-201ENST00000342245 ANGP03950 147 aaKnown RBP12.34□□□□□ -0.43
SMPD1-201ENST00000342245 KLK12Q9UKR0 248 aa12.34□□□□□ -0.43
SMPD1-201ENST00000342245 A8MUN3 132 aa12.34□□□□□ -0.43
SMPD1-201ENST00000342245 CREBBPQ92793 2442 aa12.33□□□□□ -0.43
SMPD1-201ENST00000342245 IGLV10-54A0A075B6I4 117 aa12.33□□□□□ -0.44
SMPD1-201ENST00000342245 PRO0255Q9UI72 69 aa12.33□□□□□ -0.44
SMPD1-201ENST00000342245 C3orf84H3BNL1 204 aa12.33□□□□□ -0.44
SMPD1-201ENST00000342245 Q5VV11 94 aa12.32□□□□□ -0.44
SMPD1-201ENST00000342245 FBN2P35556 2912 aa12.31□□□□□ -0.44
SMPD1-201ENST00000342245 M0R378 163 aa12.31□□□□□ -0.44
SMPD1-201ENST00000342245 LIMD2Q9BT23 127 aa12.31□□□□□ -0.44
SMPD1-201ENST00000342245 RBM12B-AS1Q9P1G2 102 aa12.31□□□□□ -0.44
SMPD1-201ENST00000342245 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.31□□□□□ -0.44
SMPD1-201ENST00000342245 ZANQ9Y493 2812 aa12.3□□□□□ -0.44
SMPD1-201ENST00000342245 IGLV5-48A0A075B6I7 105 aa12.3□□□□□ -0.44
SMPD1-201ENST00000342245 NDUFS5O43920 106 aa12.3□□□□□ -0.44
SMPD1-201ENST00000342245 DEFB130BP0DP73 79 aa12.3□□□□□ -0.44
SMPD1-201ENST00000342245 DEFB130AP0DP74 79 aa12.3□□□□□ -0.44
SMPD1-201ENST00000342245 POLQO75417 2590 aa12.29□□□□□ -0.44
SMPD1-201ENST00000342245 USP9YO00507 2555 aaPredicted RBP12.28□□□□□ -0.44
SMPD1-201ENST00000342245 CACNA1AO00555 2505 aa12.28□□□□□ -0.44
SMPD1-201ENST00000342245 FSHBP01225 129 aa12.27□□□□□ -0.45
SMPD1-201ENST00000342245 VPREB1P12018 145 aa12.27□□□□□ -0.45
SMPD1-201ENST00000342245 KPRPQ5T749 579 aaPredicted RBP12.27□□□□□ -0.45
SMPD1-201ENST00000342245 KRTAP10-9P60411 292 aa12.26□□□□□ -0.45
SMPD1-201ENST00000342245 ATP11AUNQ6ZP68 121 aa12.26□□□□□ -0.45
SMPD1-201ENST00000342245 C2CD3Q4AC94 2353 aa12.25□□□□□ -0.45
SMPD1-201ENST00000342245 C6orf48Q9UBA6 75 aa12.25□□□□□ -0.45
SMPD1-201ENST00000342245 MYO18BQ8IUG5 2567 aa12.25□□□□□ -0.45
SMPD1-201ENST00000342245 XAGE1AQ9HD64 81 aa12.25□□□□□ -0.45
SMPD1-201ENST00000342245 ANKRD17O75179 2603 aaKnown RBP12.24□□□□□ -0.45
SMPD1-201ENST00000342245 B9D2Q9BPU9 175 aa12.23□□□□□ -0.45
SMPD1-201ENST00000342245 C16orf90A8MZG2 172 aa12.22□□□□□ -0.45
SMPD1-201ENST00000342245 CHKB-CPT1BH3BT56 60 aa12.22□□□□□ -0.45
SMPD1-201ENST00000342245 SPANXA2-OT1Q8N9U9 137 aa12.22□□□□□ -0.45
SMPD1-201ENST00000342245 ACACBO00763 2458 aa12.22□□□□□ -0.45
SMPD1-201ENST00000342245 A0A096LPF7 62 aa12.21□□□□□ -0.45
SMPD1-201ENST00000342245 PHF5AQ7RTV0 110 aaKnown RBP12.21□□□□□ -0.45
SMPD1-201ENST00000342245 FAM208BQ5VWN6 2430 aa12.21□□□□□ -0.45
SMPD1-201ENST00000342245 MP68P56378 58 aa12.21□□□□□ -0.45
SMPD1-201ENST00000342245 C19orf73Q9NVV2 129 aa12.21□□□□□ -0.45
SMPD1-201ENST00000342245 WNK1Q9H4A3 2382 aa12.21□□□□□ -0.46
SMPD1-201ENST00000342245 A8MU10 97 aa12.2□□□□□ -0.46
SMPD1-201ENST00000342245 MXRA5Q9NR99 2828 aa12.19□□□□□ -0.46
SMPD1-201ENST00000342245 Q9BRP9 147 aa12.19□□□□□ -0.46
SMPD1-201ENST00000342245 ZFYVE26Q68DK2 2539 aa12.19□□□□□ -0.46
SMPD1-201ENST00000342245 HCG22E2RYF7 251 aa12.18□□□□□ -0.46
SMPD1-201ENST00000342245 Q8N9P0 234 aaPredicted RBP12.18□□□□□ -0.46
SMPD1-201ENST00000342245 CENPEQ02224 2701 aa12.18□□□□□ -0.46
SMPD1-201ENST00000342245 Q8N377 158 aa12.18□□□□□ -0.46
SMPD1-201ENST00000342245 CR1P17927 2039 aa12.18□□□□□ -0.46
SMPD1-201ENST00000342245 DSCR10P59022 87 aa12.17□□□□□ -0.46
SMPD1-201ENST00000342245 ZNF462Q96JM2 2506 aa12.17□□□□□ -0.46
SMPD1-201ENST00000342245 EGFEM1PQ0D2K5 195 aa12.17□□□□□ -0.46
SMPD1-201ENST00000342245 Q8NBF4 154 aa12.17□□□□□ -0.46
SMPD1-201ENST00000342245 SPRR4Q96PI1 79 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms