RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ACYP2P14621 99 aa8.73□□□□□ -1.01
SDC3-201ENST00000336798 TYMSOSQ8TAI1 123 aa8.73□□□□□ -1.01
SDC3-201ENST00000336798 LINC00315P59091 139 aa8.72□□□□□ -1.01
SDC3-201ENST00000336798 CPAMD8Q8IZJ3 1885 aa8.72□□□□□ -1.01
SDC3-201ENST00000336798 LRP4O75096 1905 aa8.72□□□□□ -1.01
SDC3-201ENST00000336798 C11orf72Q8NBR9 251 aa8.71□□□□□ -1.01
SDC3-201ENST00000336798 MUC22E2RYF6 1773 aaPredicted RBP8.71□□□□□ -1.02
SDC3-201ENST00000336798 Q96NJ1 140 aa8.71□□□□□ -1.02
SDC3-201ENST00000336798 ADAMTS20P59510 1910 aa8.7□□□□□ -1.02
SDC3-201ENST00000336798 ST20-AS1Q8NBB2 130 aa8.7□□□□□ -1.02
SDC3-201ENST00000336798 PIEZO2Q9H5I5 2752 aa8.7□□□□□ -1.02
SDC3-201ENST00000336798 LINC00313P59037 77 aa8.7□□□□□ -1.02
SDC3-201ENST00000336798 ATP11AUNQ6ZP68 121 aa8.68□□□□□ -1.02
SDC3-201ENST00000336798 J3QL48 77 aa8.68□□□□□ -1.02
SDC3-201ENST00000336798 EPM2AB3EWF7 344 aa8.68□□□□□ -1.02
SDC3-201ENST00000336798 KTN1-AS1Q86SY8 53 aa8.67□□□□□ -1.02
SDC3-201ENST00000336798 LINC00476Q8WZB0 136 aa8.67□□□□□ -1.02
SDC3-201ENST00000336798 FAM218AQ96MZ4 157 aa8.66□□□□□ -1.02
SDC3-201ENST00000336798 WIPF1O43516 503 aa8.66□□□□□ -1.02
SDC3-201ENST00000336798 A8MUN3 132 aa8.65□□□□□ -1.02
SDC3-201ENST00000336798 KIF25-AS1Q9Y6Z4 181 aa8.65□□□□□ -1.02
SDC3-201ENST00000336798 IGHV3OR16-9A0A0B4J2B5 98 aa8.65□□□□□ -1.03
SDC3-201ENST00000336798 KRTAP24-1Q3LI83 254 aa8.65□□□□□ -1.03
SDC3-201ENST00000336798 COX8CQ7Z4L0 72 aa8.65□□□□□ -1.03
SDC3-201ENST00000336798 NCOR2Q9Y618 2525 aa8.65□□□□□ -1.03
SDC3-201ENST00000336798 H3BS24 57 aa8.64□□□□□ -1.03
SDC3-201ENST00000336798 TM2D3Q9BRN9 247 aa8.63□□□□□ -1.03
SDC3-201ENST00000336798 TP53AIP1Q9HCN2 124 aa8.63□□□□□ -1.03
SDC3-201ENST00000336798 IGLV5-39A0A0G2JS06 123 aa8.63□□□□□ -1.03
SDC3-201ENST00000336798 FAM168BA1KXE4 195 aa8.63□□□□□ -1.03
SDC3-201ENST00000336798 SSBP3-AS1Q7Z2R9 100 aa8.62□□□□□ -1.03
SDC3-201ENST00000336798 BCE1O60756 84 aa8.62□□□□□ -1.03
SDC3-201ENST00000336798 NBDYA0A0U1RRE5 68 aa8.62□□□□□ -1.03
SDC3-201ENST00000336798 COX6B2Q6YFQ2 88 aa8.62□□□□□ -1.03
SDC3-201ENST00000336798 Q6ZRP5 223 aa8.62□□□□□ -1.03
SDC3-201ENST00000336798 Q8NBF4 154 aa8.61□□□□□ -1.03
SDC3-201ENST00000336798 LINC00588Q9Y4M8 146 aa8.61□□□□□ -1.03
SDC3-201ENST00000336798 IGF2RP11717 2491 aa8.61□□□□□ -1.03
SDC3-201ENST00000336798 ELOF1P60002 83 aaKnown RBP8.61□□□□□ -1.03
SDC3-201ENST00000336798 LCA10Q71F78 164 aa8.6□□□□□ -1.03
SDC3-201ENST00000336798 Q6ZRX8 168 aa8.59□□□□□ -1.03
SDC3-201ENST00000336798 C9orf92A6NGG3 77 aa8.57□□□□□ -1.04
SDC3-201ENST00000336798 APLNQ9ULZ1 77 aa8.57□□□□□ -1.04
SDC3-201ENST00000336798 Q6ZQT0 140 aa8.56□□□□□ -1.04
SDC3-201ENST00000336798 TRAV22A0A0B4J277 110 aa8.55□□□□□ -1.04
SDC3-201ENST00000336798 PRR15Q8IV56 129 aa8.53□□□□□ -1.04
SDC3-201ENST00000336798 DNAH10OSP0CZ25 163 aa8.53□□□□□ -1.04
SDC3-201ENST00000336798 LINC01546A6NGU7 62 aa8.53□□□□□ -1.04
SDC3-201ENST00000336798 JMJD1CQ15652 2540 aa8.52□□□□□ -1.04
SDC3-201ENST00000336798 DSCR10P59022 87 aa8.52□□□□□ -1.05
SDC3-201ENST00000336798 SMR3BP02814 79 aaPredicted RBP8.52□□□□□ -1.05
SDC3-201ENST00000336798 Q8NAQ8 132 aa8.51□□□□□ -1.05
SDC3-201ENST00000336798 LRRK2Q5S007 2527 aa8.51□□□□□ -1.05
SDC3-201ENST00000336798 CYP4F30PQ9H0H9 118 aa8.5□□□□□ -1.05
SDC3-201ENST00000336798 LINC01600Q96MT4 127 aa8.5□□□□□ -1.05
SDC3-201ENST00000336798 PTPRBP23467 1997 aa8.5□□□□□ -1.05
SDC3-201ENST00000336798 COL27A1Q8IZC6 1860 aaPredicted RBP8.49□□□□□ -1.05
SDC3-201ENST00000336798 WWC2-AS2Q96NR7 200 aa8.49□□□□□ -1.05
SDC3-201ENST00000336798 IGLV6-57P01721 117 aa8.49□□□□□ -1.05
SDC3-201ENST00000336798 TRBV7-4A0A0J9YYF1 115 aa8.49□□□□□ -1.05
SDC3-201ENST00000336798 K7EQZ3 153 aa8.49□□□□□ -1.05
SDC3-201ENST00000336798 RBM12B-AS1Q9P1G2 102 aa8.49□□□□□ -1.05
SDC3-201ENST00000336798 H3BNG1 76 aa8.48□□□□□ -1.05
SDC3-201ENST00000336798 C10orf142B7Z368 130 aa8.48□□□□□ -1.05
SDC3-201ENST00000336798 A0A0G2JQZ4 141 aa8.48□□□□□ -1.05
SDC3-201ENST00000336798 A0A1W2PNN7 141 aa8.48□□□□□ -1.05
SDC3-201ENST00000336798 OBSCN-AS1Q96MR7 158 aa8.47□□□□□ -1.05
SDC3-201ENST00000336798 LOC110117498A0A087WWA1 95 aa8.47□□□□□ -1.05
SDC3-201ENST00000336798 H3BPC8 53 aa8.47□□□□□ -1.05
SDC3-201ENST00000336798 COA5Q86WW8 74 aa8.47□□□□□ -1.05
SDC3-201ENST00000336798 IGLV5-45A0A087WSX0 123 aa8.46□□□□□ -1.05
SDC3-201ENST00000336798 GVQW2A0A096LPI5 108 aaPredicted RBP8.46□□□□□ -1.06
SDC3-201ENST00000336798 MYO9AB2RTY4 2548 aa8.45□□□□□ -1.06
SDC3-201ENST00000336798 ANAPC11Q9NYG5 84 aa8.45□□□□□ -1.06
SDC3-201ENST00000336798 LINC01554Q52M75 96 aa8.45□□□□□ -1.06
SDC3-201ENST00000336798 H7BZZ5 65 aa8.44□□□□□ -1.06
SDC3-201ENST00000336798 MRPL34Q9BQ48 92 aaKnown RBP8.44□□□□□ -1.06
SDC3-201ENST00000336798 A8MWP4 228 aa8.44□□□□□ -1.06
SDC3-201ENST00000336798 TLN1Q9Y490 2541 aaKnown RBP8.43□□□□□ -1.06
SDC3-201ENST00000336798 FN1P02751 2386 aaKnown RBP8.43□□□□□ -1.06
SDC3-201ENST00000336798 CRIPTQ9P021 101 aa8.43□□□□□ -1.06
SDC3-201ENST00000336798 CHD8Q9HCK8 2581 aa8.42□□□□□ -1.06
SDC3-201ENST00000336798 LOC101927531A0A1B0GV80 90 aa8.41□□□□□ -1.06
SDC3-201ENST00000336798 ABCA12Q86UK0 2595 aa8.41□□□□□ -1.06
SDC3-201ENST00000336798 KRTAP10-11P60412 298 aa8.41□□□□□ -1.06
SDC3-201ENST00000336798 ZFYVE26Q68DK2 2539 aa8.41□□□□□ -1.06
SDC3-201ENST00000336798 WDR87Q6ZQQ6 2873 aa8.41□□□□□ -1.06
SDC3-201ENST00000336798 LINC00304Q8N9R0 145 aa8.4□□□□□ -1.06
SDC3-201ENST00000336798 KLKP1Q107X0 134 aa8.4□□□□□ -1.07
SDC3-201ENST00000336798 ERC2-IT1O76042 136 aa8.4□□□□□ -1.07
SDC3-201ENST00000336798 A0A1B0GW54 56 aa8.39□□□□□ -1.07
SDC3-201ENST00000336798 IGLV1-50A0A075B6I6 118 aa8.39□□□□□ -1.07
SDC3-201ENST00000336798 A0A0D9SG42 100 aa8.38□□□□□ -1.07
SDC3-201ENST00000336798 UQCR11O14957 56 aa8.38□□□□□ -1.07
SDC3-201ENST00000336798 MIR22HGQ0VDD5 57 aa8.38□□□□□ -1.07
SDC3-201ENST00000336798 Q5XG85 94 aa8.38□□□□□ -1.07
SDC3-201ENST00000336798 IGFL1Q6UW32 110 aa8.38□□□□□ -1.07
SDC3-201ENST00000336798 COL4A2P08572 1712 aa8.37□□□□□ -1.07
SDC3-201ENST00000336798 C9orf129Q5T035 196 aaKnown RBP8.37□□□□□ -1.07
SDC3-201ENST00000336798 IGLV5-37A0A075B6J1 123 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms