RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 C16orf74Q96GX8 76 aa7.67□□□□□ -1.18
LSM3-201ENST00000306024 IGLV5-45A0A087WSX0 123 aa7.66□□□□□ -1.18
LSM3-201ENST00000306024 LINC00474Q9P2X8 69 aa7.66□□□□□ -1.18
LSM3-201ENST00000306024 NDUFC1O43677 76 aa7.66□□□□□ -1.18
LSM3-201ENST00000306024 IBA57-AS1B1ANH7 110 aa7.65□□□□□ -1.19
LSM3-201ENST00000306024 MIFP14174 115 aa7.65□□□□□ -1.19
LSM3-201ENST00000306024 Q6ZTI0 123 aa7.65□□□□□ -1.19
LSM3-201ENST00000306024 C1orf158Q8N1D5 194 aa7.65□□□□□ -1.19
LSM3-201ENST00000306024 H7BZZ5 65 aa7.64□□□□□ -1.19
LSM3-201ENST00000306024 K7EQD1 137 aa7.64□□□□□ -1.19
LSM3-201ENST00000306024 IGKV2-28A0A075B6P5 120 aa7.64□□□□□ -1.19
LSM3-201ENST00000306024 IGKV2D-28P01615 120 aa7.64□□□□□ -1.19
LSM3-201ENST00000306024 ATP5EP56381 51 aaPredicted RBP7.64□□□□□ -1.19
LSM3-201ENST00000306024 MDFIQ99750 246 aa7.64□□□□□ -1.19
LSM3-201ENST00000306024 CLPSL2Q6UWE3 100 aa7.63□□□□□ -1.19
LSM3-201ENST00000306024 CDC42SE2Q9NRR3 84 aa7.63□□□□□ -1.19
LSM3-201ENST00000306024 ZFHX3Q15911 3703 aa7.63□□□□□ -1.19
LSM3-201ENST00000306024 Q8N3U1 123 aa7.63□□□□□ -1.19
LSM3-201ENST00000306024 C22orf24Q9Y442 160 aa7.63□□□□□ -1.19
LSM3-201ENST00000306024 FUSP35637 526 aaKnown RBP eCLIP7.62□□□□□ -1.19
LSM3-201ENST00000306024 C6orf99Q4VX62 202 aa7.62□□□□□ -1.19
LSM3-201ENST00000306024 FAM104AQ969W3 186 aa7.62□□□□□ -1.19
LSM3-201ENST00000306024 ZNF469Q96JG9 3925 aaPredicted RBP7.62□□□□□ -1.19
LSM3-201ENST00000306024 TRBV10-3A0A0K0K1G6 114 aa7.62□□□□□ -1.19
LSM3-201ENST00000306024 TRBV6-4A0A1B0GX49 114 aa7.62□□□□□ -1.19
LSM3-201ENST00000306024 SS18Q15532 418 aa7.62□□□□□ -1.19
LSM3-201ENST00000306024 Q8N814 137 aa7.62□□□□□ -1.19
LSM3-201ENST00000306024 TRAV10A0A0B4J240 114 aa7.61□□□□□ -1.19
LSM3-201ENST00000306024 TRBV10-1A0A0K0K1A3 114 aa7.61□□□□□ -1.19
LSM3-201ENST00000306024 PRR3P79522 188 aaKnown RBP7.61□□□□□ -1.19
LSM3-201ENST00000306024 SPART-AS1P0CW21 52 aa7.6□□□□□ -1.19
LSM3-201ENST00000306024 LINC01547P58512 204 aaPredicted RBP7.6□□□□□ -1.19
LSM3-201ENST00000306024 C19orf73Q9NVV2 129 aa7.6□□□□□ -1.19
LSM3-201ENST00000306024 TENM1Q9UKZ4 2725 aa7.6□□□□□ -1.19
LSM3-201ENST00000306024 NREPQ16612 68 aa7.59□□□□□ -1.19
LSM3-201ENST00000306024 C11orf72Q8NBR9 251 aa7.59□□□□□ -1.19
LSM3-201ENST00000306024 LRCOL1A6NCL2 159 aa7.59□□□□□ -1.19
LSM3-201ENST00000306024 NTM-AS1Q6ZSK4 140 aa7.59□□□□□ -1.19
LSM3-201ENST00000306024 Q6ZVQ6 151 aa7.59□□□□□ -1.19
LSM3-201ENST00000306024 NBEAL2Q6ZNJ1 2754 aa7.59□□□□□ -1.2
LSM3-201ENST00000306024 IGHV4-28A0A0C4DH34 117 aa7.58□□□□□ -1.2
LSM3-201ENST00000306024 RETNQ9HD89 108 aa7.58□□□□□ -1.2
LSM3-201ENST00000306024 TMEM254Q8TBM7 123 aa7.57□□□□□ -1.2
LSM3-201ENST00000306024 A8MTW9 85 aa7.57□□□□□ -1.2
LSM3-201ENST00000306024 KLKP1Q107X0 134 aa7.57□□□□□ -1.2
LSM3-201ENST00000306024 NBEAL1Q6ZS30 2694 aa7.57□□□□□ -1.2
LSM3-201ENST00000306024 A0A096LPF7 62 aa7.57□□□□□ -1.2
LSM3-201ENST00000306024 ZNF561-AS1K7EIQ3 104 aa7.57□□□□□ -1.2
LSM3-201ENST00000306024 KRTAP10-11P60412 298 aa7.56□□□□□ -1.2
LSM3-201ENST00000306024 PDE6GP18545 87 aa7.56□□□□□ -1.2
LSM3-201ENST00000306024 TM2D3Q9BRN9 247 aa7.56□□□□□ -1.2
LSM3-201ENST00000306024 Q6ZQY7 126 aa7.56□□□□□ -1.2
LSM3-201ENST00000306024 FP248Q71RG6 208 aaPredicted RBP7.56□□□□□ -1.2
LSM3-201ENST00000306024 BPY2O14599 106 aa7.55□□□□□ -1.2
LSM3-201ENST00000306024 BCE1O60756 84 aa7.55□□□□□ -1.2
LSM3-201ENST00000306024 OBSCN-AS1Q96MR7 158 aa7.55□□□□□ -1.2
LSM3-201ENST00000306024 ANK3Q12955 4377 aaKnown RBP7.55□□□□□ -1.2
LSM3-201ENST00000306024 A0A087WZ39 114 aa7.55□□□□□ -1.2
LSM3-201ENST00000306024 ESRGQ1W209 222 aa7.55□□□□□ -1.2
LSM3-201ENST00000306024 LYRM9A8MSI8 78 aa7.54□□□□□ -1.2
LSM3-201ENST00000306024 GYPEP15421 78 aa7.54□□□□□ -1.2
LSM3-201ENST00000306024 PMAIP1Q13794 54 aa7.54□□□□□ -1.2
LSM3-201ENST00000306024 LOC100131303A0A0U1RQF7 123 aa7.54□□□□□ -1.2
LSM3-201ENST00000306024 GIG44P09565 113 aaPredicted RBP7.54□□□□□ -1.2
LSM3-201ENST00000306024 LYPD5Q6UWN5 251 aa7.54□□□□□ -1.2
LSM3-201ENST00000306024 IGLV10-54A0A075B6I4 117 aa7.53□□□□□ -1.2
LSM3-201ENST00000306024 PRYO14603 147 aa7.53□□□□□ -1.2
LSM3-201ENST00000306024 IGLV4-60A0A075B6I1 120 aa7.52□□□□□ -1.21
LSM3-201ENST00000306024 FAM19A3Q7Z5A8 133 aa7.52□□□□□ -1.21
LSM3-201ENST00000306024 PRO0255Q9UI72 69 aa7.52□□□□□ -1.21
LSM3-201ENST00000306024 C11orf45Q8TAV5 145 aa7.52□□□□□ -1.21
LSM3-201ENST00000306024 IL17DQ8TAD2 202 aa7.51□□□□□ -1.21
LSM3-201ENST00000306024 CSNK1G2-AS1Q8NCQ2 148 aa7.51□□□□□ -1.21
LSM3-201ENST00000306024 X6R8D5 127 aa7.51□□□□□ -1.21
LSM3-201ENST00000306024 PSPHP1O15172 72 aa7.5□□□□□ -1.21
LSM3-201ENST00000306024 Q6ZQT0 140 aa7.5□□□□□ -1.21
LSM3-201ENST00000306024 Q8N9L7 120 aa7.5□□□□□ -1.21
LSM3-201ENST00000306024 VWFP04275 2813 aa7.5□□□□□ -1.21
LSM3-201ENST00000306024 MRPL55Q7Z7F7 128 aaKnown RBP7.5□□□□□ -1.21
LSM3-201ENST00000306024 AKAP9Q99996 3911 aa7.5□□□□□ -1.21
LSM3-201ENST00000306024 A0A0J9YWU9 116 aa7.5□□□□□ -1.21
LSM3-201ENST00000306024 EGFEM1PQ0D2K5 195 aa7.5□□□□□ -1.21
LSM3-201ENST00000306024 LINC00269Q8N2A0 174 aa7.5□□□□□ -1.21
LSM3-201ENST00000306024 PRR4Q16378 134 aa7.49□□□□□ -1.21
LSM3-201ENST00000306024 CXCL6P80162 114 aa7.49□□□□□ -1.21
LSM3-201ENST00000306024 TRBV6-8A0A0A6YYG3 113 aa7.49□□□□□ -1.21
LSM3-201ENST00000306024 LINC00959A0A1B0GUT2 108 aa7.49□□□□□ -1.21
LSM3-201ENST00000306024 IGHV3OR16-9A0A0B4J2B5 98 aa7.48□□□□□ -1.21
LSM3-201ENST00000306024 ANGP03950 147 aaKnown RBP7.48□□□□□ -1.21
LSM3-201ENST00000306024 C9orf116Q5BN46 136 aaPredicted RBP7.48□□□□□ -1.21
LSM3-201ENST00000306024 LINC00575Q6W349 94 aa7.48□□□□□ -1.21
LSM3-201ENST00000306024 DIRC1Q969H9 104 aa7.48□□□□□ -1.21
LSM3-201ENST00000306024 CELA1Q9UNI1 258 aa7.48□□□□□ -1.21
LSM3-201ENST00000306024 K7EIL1 84 aa7.47□□□□□ -1.21
LSM3-201ENST00000306024 MUC7Q8TAX7 377 aa7.47□□□□□ -1.21
LSM3-201ENST00000306024 HIGD2BQ4VC39 106 aa7.47□□□□□ -1.21
LSM3-201ENST00000306024 DEFB131BA0A096LNP1 70 aa7.46□□□□□ -1.21
LSM3-201ENST00000306024 NANOS2P60321 138 aaKnown RBP7.46□□□□□ -1.21
LSM3-201ENST00000306024 SPTSSBQ8NFR3 76 aa7.46□□□□□ -1.21
LSM3-201ENST00000306024 HIGD2AQ9BW72 106 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 161.8 ms