RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 C9orf163Q8N9P6 203 aa12.22□□□□□ -0.45
PDLIM3-202ENST00000284770 A0A0B4J2C4 111 aa12.21□□□□□ -0.45
PDLIM3-202ENST00000284770 RAB37Q96AX2 223 aa12.21□□□□□ -0.45
PDLIM3-202ENST00000284770 SND1-IT1Q9HBX3 110 aa12.2□□□□□ -0.46
PDLIM3-202ENST00000284770 Q6ZRP5 223 aa12.2□□□□□ -0.46
PDLIM3-202ENST00000284770 RYR2Q92736 4967 aa12.2□□□□□ -0.46
PDLIM3-202ENST00000284770 LOC107984640A0A0U1RRK4 108 aa12.19□□□□□ -0.46
PDLIM3-202ENST00000284770 A0A1B0GV90 55 aa12.18□□□□□ -0.46
PDLIM3-202ENST00000284770 RPL18AQ02543 176 aaKnown RBP12.18□□□□□ -0.46
PDLIM3-202ENST00000284770 PRO1854Q9UHT4 67 aa12.18□□□□□ -0.46
PDLIM3-202ENST00000284770 C9orf118A6NHY6 69 aa12.17□□□□□ -0.46
PDLIM3-202ENST00000284770 GAGE2EQ4V326 116 aa12.17□□□□□ -0.46
PDLIM3-202ENST00000284770 GAGE2DQ9UEU5 116 aa12.17□□□□□ -0.46
PDLIM3-202ENST00000284770 FAT2Q9NYQ8 4349 aa12.16□□□□□ -0.46
PDLIM3-202ENST00000284770 IGLV5-52A0A0A0MRZ9 124 aa12.16□□□□□ -0.46
PDLIM3-202ENST00000284770 FUSP35637 526 aaKnown RBP eCLIP12.16□□□□□ -0.46
PDLIM3-202ENST00000284770 XAGE1AQ9HD64 81 aa12.15□□□□□ -0.46
PDLIM3-202ENST00000284770 HECTD4Q9Y4D8 3996 aa12.15□□□□□ -0.46
PDLIM3-202ENST00000284770 KRTAP10-2P60368 255 aa12.15□□□□□ -0.46
PDLIM3-202ENST00000284770 LINC01620Q4KN68 170 aa12.15□□□□□ -0.46
PDLIM3-202ENST00000284770 PGPEP1Q9NXJ5 209 aa12.15□□□□□ -0.46
PDLIM3-202ENST00000284770 PKIGQ9Y2B9 76 aa12.15□□□□□ -0.46
PDLIM3-202ENST00000284770 IGKV2-28A0A075B6P5 120 aa12.14□□□□□ -0.47
PDLIM3-202ENST00000284770 IGKV2D-28P01615 120 aa12.14□□□□□ -0.47
PDLIM3-202ENST00000284770 GAGE2BQ13066 116 aa12.14□□□□□ -0.47
PDLIM3-202ENST00000284770 SDIM1Q6ZPB5 146 aa12.14□□□□□ -0.47
PDLIM3-202ENST00000284770 NAA38Q9BRA0 125 aaKnown RBP12.14□□□□□ -0.47
PDLIM3-202ENST00000284770 C16orf90A8MZG2 172 aa12.13□□□□□ -0.47
PDLIM3-202ENST00000284770 H3BUT2 72 aa12.13□□□□□ -0.47
PDLIM3-202ENST00000284770 NDUFC2O95298 119 aa12.13□□□□□ -0.47
PDLIM3-202ENST00000284770 TSPAN13O95857 204 aa12.13□□□□□ -0.47
PDLIM3-202ENST00000284770 Q8NDZ9 215 aa12.13□□□□□ -0.47
PDLIM3-202ENST00000284770 A0A096LNI7 61 aa12.11□□□□□ -0.47
PDLIM3-202ENST00000284770 C9orf129Q5T035 196 aaKnown RBP12.11□□□□□ -0.47
PDLIM3-202ENST00000284770 LINC00337Q8N6G1 96 aa12.1□□□□□ -0.47
PDLIM3-202ENST00000284770 RPL13AP40429 203 aaKnown RBP12.09□□□□□ -0.47
PDLIM3-202ENST00000284770 IGKV2-24A0A0C4DH68 120 aa12.08□□□□□ -0.48
PDLIM3-202ENST00000284770 DNAH11Q96DT5 4516 aa12.08□□□□□ -0.48
PDLIM3-202ENST00000284770 TRAV13-2A0A0B4J235 113 aa12.07□□□□□ -0.48
PDLIM3-202ENST00000284770 A0A1W2PPM0 123 aa12.07□□□□□ -0.48
PDLIM3-202ENST00000284770 PRR3P79522 188 aaKnown RBP12.07□□□□□ -0.48
PDLIM3-202ENST00000284770 H7C2G1 150 aa12.07□□□□□ -0.48
PDLIM3-202ENST00000284770 LINC00474Q9P2X8 69 aa12.07□□□□□ -0.48
PDLIM3-202ENST00000284770 A0A1B0GVY2 172 aa12.06□□□□□ -0.48
PDLIM3-202ENST00000284770 PKD1P98161 4303 aa12.06□□□□□ -0.48
PDLIM3-202ENST00000284770 CHTF8P0CG12 524 aa12.05□□□□□ -0.48
PDLIM3-202ENST00000284770 PLA2G2DQ9UNK4 145 aa12.05□□□□□ -0.48
PDLIM3-202ENST00000284770 VPREB1P12018 145 aa12.03□□□□□ -0.48
PDLIM3-202ENST00000284770 Q1RN00 199 aa12.03□□□□□ -0.48
PDLIM3-202ENST00000284770 RYR3Q15413 4870 aa12.03□□□□□ -0.48
PDLIM3-202ENST00000284770 FAM168BA1KXE4 195 aa12.02□□□□□ -0.48
PDLIM3-202ENST00000284770 NCR3O14931 201 aa12.02□□□□□ -0.48
PDLIM3-202ENST00000284770 FABP2P12104 132 aa12.02□□□□□ -0.48
PDLIM3-202ENST00000284770 PANO1I0J062 215 aa12.02□□□□□ -0.49
PDLIM3-202ENST00000284770 VAMP3Q15836 100 aa12.02□□□□□ -0.49
PDLIM3-202ENST00000284770 SERTAD4-AS1Q5TG53 156 aa12.02□□□□□ -0.49
PDLIM3-202ENST00000284770 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.02□□□□□ -0.49
PDLIM3-202ENST00000284770 TRBV10-2A0A0K0K1G8 114 aa12.01□□□□□ -0.49
PDLIM3-202ENST00000284770 SPACA4Q8TDM5 124 aa12.01□□□□□ -0.49
PDLIM3-202ENST00000284770 TRIAP1O43715 76 aa12□□□□□ -0.49
PDLIM3-202ENST00000284770 KRTAP7-1Q8IUC3 87 aa12□□□□□ -0.49
PDLIM3-202ENST00000284770 OR13C6PQ8NH95 151 aa12□□□□□ -0.49
PDLIM3-202ENST00000284770 IGLV5-37A0A075B6J1 123 aa11.99□□□□□ -0.49
PDLIM3-202ENST00000284770 A0A1W2PNN7 141 aa11.99□□□□□ -0.49
PDLIM3-202ENST00000284770 PSMB2P49721 201 aa11.99□□□□□ -0.49
PDLIM3-202ENST00000284770 FAM19A5Q7Z5A7 132 aaPredicted RBP11.99□□□□□ -0.49
PDLIM3-202ENST00000284770 DPH3Q96FX2 82 aa11.99□□□□□ -0.49
PDLIM3-202ENST00000284770 KRTAP10-1P60331 282 aa11.98□□□□□ -0.49
PDLIM3-202ENST00000284770 TMEM126AQ9H061 195 aa11.98□□□□□ -0.49
PDLIM3-202ENST00000284770 DNAH5Q8TE73 4624 aa11.98□□□□□ -0.49
PDLIM3-202ENST00000284770 RPL28P46779 137 aaKnown RBP11.97□□□□□ -0.49
PDLIM3-202ENST00000284770 NKAPP1Q8N9T2 125 aa11.97□□□□□ -0.49
PDLIM3-202ENST00000284770 SPCS1Q9Y6A9 102 aa11.97□□□□□ -0.49
PDLIM3-202ENST00000284770 IGLV6-57P01721 117 aa11.97□□□□□ -0.49
PDLIM3-202ENST00000284770 SMIM11BQ8TCY0 68 aa11.97□□□□□ -0.49
PDLIM3-202ENST00000284770 K7EP34 96 aa11.96□□□□□ -0.49
PDLIM3-202ENST00000284770 M0R378 163 aa11.96□□□□□ -0.49
PDLIM3-202ENST00000284770 C22orf24Q9Y442 160 aa11.96□□□□□ -0.49
PDLIM3-202ENST00000284770 GAGE10A6NGK3 116 aa11.95□□□□□ -0.5
PDLIM3-202ENST00000284770 S100A7L2Q5SY68 101 aa11.95□□□□□ -0.5
PDLIM3-202ENST00000284770 LYRM7Q5U5X0 104 aa11.95□□□□□ -0.5
PDLIM3-202ENST00000284770 A0A087WYN8 130 aa11.94□□□□□ -0.5
PDLIM3-202ENST00000284770 EPM2AB3EWF7 344 aa11.94□□□□□ -0.5
PDLIM3-202ENST00000284770 SCGB1C2P0DMR2 95 aa11.94□□□□□ -0.5
PDLIM3-202ENST00000284770 FAM30AQ9NZY2 134 aa11.94□□□□□ -0.5
PDLIM3-202ENST00000284770 UBE2V1Q13404 147 aa11.93□□□□□ -0.5
PDLIM3-202ENST00000284770 Q6ZSA8 131 aa11.93□□□□□ -0.5
PDLIM3-202ENST00000284770 TRBV10-3A0A0K0K1G6 114 aa11.92□□□□□ -0.5
PDLIM3-202ENST00000284770 M0QXV9 152 aa11.92□□□□□ -0.5
PDLIM3-202ENST00000284770 COX6CP09669 75 aa11.92□□□□□ -0.5
PDLIM3-202ENST00000284770 GTF2H5Q6ZYL4 71 aa11.92□□□□□ -0.5
PDLIM3-202ENST00000284770 MRPL55Q7Z7F7 128 aaKnown RBP11.92□□□□□ -0.5
PDLIM3-202ENST00000284770 C7orf33Q8WU49 177 aa11.92□□□□□ -0.5
PDLIM3-202ENST00000284770 TCL1BO95988 128 aa11.92□□□□□ -0.5
PDLIM3-202ENST00000284770 PLAC8Q9NZF1 115 aa11.92□□□□□ -0.5
PDLIM3-202ENST00000284770 TRBV20-1A0A075B6N2 111 aa11.9□□□□□ -0.5
PDLIM3-202ENST00000284770 LINC00167Q96N53 147 aa11.9□□□□□ -0.5
PDLIM3-202ENST00000284770 PKHD1P08F94 4074 aa11.88□□□□□ -0.51
PDLIM3-202ENST00000284770 H3BMG7 143 aa11.87□□□□□ -0.51
PDLIM3-202ENST00000284770 PHF5AQ7RTV0 110 aaKnown RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms