RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 IGHV4-38-2P0DP08 117 aa6.28□□□□□ -1.4
PDGFC-201ENST00000274071 FAM30AQ9NZY2 134 aa6.28□□□□□ -1.4
PDGFC-201ENST00000274071 IGHV4-30-2A0A087WSY4 118 aa6.28□□□□□ -1.4
PDGFC-201ENST00000274071 BRD3OSQ6XYD6 125 aa6.28□□□□□ -1.4
PDGFC-201ENST00000274071 Q6ZQY7 126 aa6.28□□□□□ -1.4
PDGFC-201ENST00000274071 CELA1Q9UNI1 258 aa6.28□□□□□ -1.4
PDGFC-201ENST00000274071 LCE6AA0A183 80 aa6.27□□□□□ -1.41
PDGFC-201ENST00000274071 CYP4F30PQ9H0H9 118 aa6.27□□□□□ -1.41
PDGFC-201ENST00000274071 UBR5O95071 2799 aaPredicted RBP6.27□□□□□ -1.41
PDGFC-201ENST00000274071 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.27□□□□□ -1.41
PDGFC-201ENST00000274071 IGLV4-60A0A075B6I1 120 aa6.27□□□□□ -1.41
PDGFC-201ENST00000274071 ZCCHC13Q8WW36 166 aaKnown RBP6.27□□□□□ -1.41
PDGFC-201ENST00000274071 DIRC1Q969H9 104 aa6.27□□□□□ -1.41
PDGFC-201ENST00000274071 FBN2P35556 2912 aa6.27□□□□□ -1.41
PDGFC-201ENST00000274071 ANKRD17O75179 2603 aaKnown RBP6.26□□□□□ -1.41
PDGFC-201ENST00000274071 USP9YO00507 2555 aaPredicted RBP6.26□□□□□ -1.41
PDGFC-201ENST00000274071 USMG5Q96IX5 58 aa6.26□□□□□ -1.41
PDGFC-201ENST00000274071 C10orf25Q5T742 122 aa6.25□□□□□ -1.41
PDGFC-201ENST00000274071 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.25□□□□□ -1.41
PDGFC-201ENST00000274071 ABCA12Q86UK0 2595 aa6.25□□□□□ -1.41
PDGFC-201ENST00000274071 MSMBP08118 114 aa6.25□□□□□ -1.41
PDGFC-201ENST00000274071 ZANQ9Y493 2812 aa6.25□□□□□ -1.41
PDGFC-201ENST00000274071 CSPG4Q6UVK1 2322 aa6.25□□□□□ -1.41
PDGFC-201ENST00000274071 C7orf65Q6ZTY9 151 aa6.24□□□□□ -1.41
PDGFC-201ENST00000274071 SMIM29Q86T20 159 aa6.24□□□□□ -1.41
PDGFC-201ENST00000274071 Q8N9P0 234 aaPredicted RBP6.24□□□□□ -1.41
PDGFC-201ENST00000274071 Q8NDZ9 215 aa6.24□□□□□ -1.41
PDGFC-201ENST00000274071 CUBNO60494 3623 aa6.24□□□□□ -1.41
PDGFC-201ENST00000274071 PTPN13Q12923 2485 aa6.23□□□□□ -1.41
PDGFC-201ENST00000274071 B4DSR2 109 aa6.23□□□□□ -1.41
PDGFC-201ENST00000274071 LY6EQ16553 131 aa6.23□□□□□ -1.41
PDGFC-201ENST00000274071 NBPF19A0A087WUL8 3843 aa6.23□□□□□ -1.41
PDGFC-201ENST00000274071 DSCR9P59020 149 aa6.22□□□□□ -1.41
PDGFC-201ENST00000274071 CR1P17927 2039 aa6.22□□□□□ -1.41
PDGFC-201ENST00000274071 H3BUX3 64 aa6.22□□□□□ -1.41
PDGFC-201ENST00000274071 LIMD2Q9BT23 127 aa6.22□□□□□ -1.41
PDGFC-201ENST00000274071 PRR15LQ9BU68 103 aa6.22□□□□□ -1.41
PDGFC-201ENST00000274071 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.21□□□□□ -1.41
PDGFC-201ENST00000274071 COX7BP24311 80 aa6.21□□□□□ -1.41
PDGFC-201ENST00000274071 CREBBPQ92793 2442 aa6.21□□□□□ -1.41
PDGFC-201ENST00000274071 PLA2G2AP14555 144 aa6.21□□□□□ -1.42
PDGFC-201ENST00000274071 TRGV2A0A075B6R0 118 aa6.2□□□□□ -1.42
PDGFC-201ENST00000274071 H3BQ85 93 aa6.2□□□□□ -1.42
PDGFC-201ENST00000274071 KLK12Q9UKR0 248 aa6.2□□□□□ -1.42
PDGFC-201ENST00000274071 MXRA5Q9NR99 2828 aa6.2□□□□□ -1.42
PDGFC-201ENST00000274071 A6NDX4 124 aa6.2□□□□□ -1.42
PDGFC-201ENST00000274071 A6NED7 52 aa6.2□□□□□ -1.42
PDGFC-201ENST00000274071 HELZ2Q9BYK8 2649 aaKnown RBP6.19□□□□□ -1.42
PDGFC-201ENST00000274071 NAV2Q8IVL1 2488 aa6.19□□□□□ -1.42
PDGFC-201ENST00000274071 MAPK1IP1LQ8NDC0 245 aa6.19□□□□□ -1.42
PDGFC-201ENST00000274071 ZNF469Q96JG9 3925 aaPredicted RBP6.19□□□□□ -1.42
PDGFC-201ENST00000274071 TENM4Q6N022 2769 aa6.19□□□□□ -1.42
PDGFC-201ENST00000274071 TEX15Q9BXT5 2789 aa6.19□□□□□ -1.42
PDGFC-201ENST00000274071 H3BUA1 57 aa6.18□□□□□ -1.42
PDGFC-201ENST00000274071 KRTAP10-9P60411 292 aa6.18□□□□□ -1.42
PDGFC-201ENST00000274071 ST20-AS1Q8NBB2 130 aa6.18□□□□□ -1.42
PDGFC-201ENST00000274071 APCP25054 2843 aa6.18□□□□□ -1.42
PDGFC-201ENST00000274071 C9orf116Q5BN46 136 aaPredicted RBP6.18□□□□□ -1.42
PDGFC-201ENST00000274071 Q75L30 129 aa6.18□□□□□ -1.42
PDGFC-201ENST00000274071 Q8IZM0 81 aa6.18□□□□□ -1.42
PDGFC-201ENST00000274071 PRR26Q8N8Z3 221 aa6.18□□□□□ -1.42
PDGFC-201ENST00000274071 CCDC168Q8NDH2 2452 aa6.17□□□□□ -1.42
PDGFC-201ENST00000274071 TRGV1A0A0A0MS02 117 aa6.17□□□□□ -1.42
PDGFC-201ENST00000274071 WNK1Q9H4A3 2382 aa6.17□□□□□ -1.42
PDGFC-201ENST00000274071 C3orf84H3BNL1 204 aa6.17□□□□□ -1.42
PDGFC-201ENST00000274071 B9D2Q9BPU9 175 aa6.17□□□□□ -1.42
PDGFC-201ENST00000274071 CDC42SE1Q9NRR8 79 aa6.17□□□□□ -1.42
PDGFC-201ENST00000274071 FASNP49327 2511 aaKnown RBP6.16□□□□□ -1.42
PDGFC-201ENST00000274071 LINC00959A0A1B0GUT2 108 aa6.16□□□□□ -1.42
PDGFC-201ENST00000274071 ETDCA0A1B0GVM5 59 aa6.16□□□□□ -1.42
PDGFC-201ENST00000274071 IGLV1-40P01703 118 aa6.16□□□□□ -1.42
PDGFC-201ENST00000274071 DEFB131AP59861 70 aa6.16□□□□□ -1.42
PDGFC-201ENST00000274071 MOBPQ13875 183 aa6.16□□□□□ -1.42
PDGFC-201ENST00000274071 DEFB112Q30KQ8 113 aa6.16□□□□□ -1.42
PDGFC-201ENST00000274071 NKAPP1Q8N9T2 125 aa6.16□□□□□ -1.42
PDGFC-201ENST00000274071 IGHV4-59P01825 116 aa6.16□□□□□ -1.42
PDGFC-201ENST00000274071 TRGV4A0A0C4DH28 118 aa6.15□□□□□ -1.42
PDGFC-201ENST00000274071 COX17Q14061 63 aa6.15□□□□□ -1.42
PDGFC-201ENST00000274071 DEFB114Q30KQ6 69 aa6.15□□□□□ -1.42
PDGFC-201ENST00000274071 HIGD2BQ4VC39 106 aa6.15□□□□□ -1.42
PDGFC-201ENST00000274071 NOTCH2Q04721 2471 aa6.15□□□□□ -1.42
PDGFC-201ENST00000274071 IGLV6-57P01721 117 aa6.15□□□□□ -1.42
PDGFC-201ENST00000274071 LOC100131303A0A0U1RQF7 123 aa6.15□□□□□ -1.43
PDGFC-201ENST00000274071 IGHV4-30-4P0DP06 118 aa6.15□□□□□ -1.43
PDGFC-201ENST00000274071 HECTD1Q9ULT8 2610 aa6.14□□□□□ -1.43
PDGFC-201ENST00000274071 NDUFB1O75438 58 aa6.14□□□□□ -1.43
PDGFC-201ENST00000274071 DEFB113Q30KQ7 82 aa6.14□□□□□ -1.43
PDGFC-201ENST00000274071 LOC101927531A0A1B0GV80 90 aa6.14□□□□□ -1.43
PDGFC-201ENST00000274071 TLN2Q9Y4G6 2542 aa6.13□□□□□ -1.43
PDGFC-201ENST00000274071 LINC00208Q96KT6 92 aa6.13□□□□□ -1.43
PDGFC-201ENST00000274071 ELOF1P60002 83 aaKnown RBP6.13□□□□□ -1.43
PDGFC-201ENST00000274071 KIAA0087Q14695 138 aa6.13□□□□□ -1.43
PDGFC-201ENST00000274071 GCN1Q92616 2671 aaKnown RBP6.12□□□□□ -1.43
PDGFC-201ENST00000274071 MDFIQ99750 246 aa6.12□□□□□ -1.43
PDGFC-201ENST00000274071 KMT2BQ9UMN6 2715 aaPredicted RBP6.12□□□□□ -1.43
PDGFC-201ENST00000274071 C10orf99Q6UWK7 81 aa6.11□□□□□ -1.43
PDGFC-201ENST00000274071 IGHV4-28A0A0C4DH34 117 aa6.11□□□□□ -1.43
PDGFC-201ENST00000274071 ITPR3Q14573 2671 aa6.1□□□□□ -1.43
PDGFC-201ENST00000274071 FSHBP01225 129 aa6.1□□□□□ -1.43
PDGFC-201ENST00000274071 Q6YL49 198 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms