RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 SERP2Q8N6R1 65 aa8.27□□□□□ -1.09
USHBP1-201ENST00000252597 LINC01600Q96MT4 127 aa8.27□□□□□ -1.09
USHBP1-201ENST00000252597 NSD1Q96L73 2696 aaPredicted RBP8.26□□□□□ -1.09
USHBP1-201ENST00000252597 IL17DQ8TAD2 202 aa8.26□□□□□ -1.09
USHBP1-201ENST00000252597 TMEM256-PLSCR3K7ERE1 68 aa8.25□□□□□ -1.09
USHBP1-201ENST00000252597 M0R2N4 97 aa8.25□□□□□ -1.09
USHBP1-201ENST00000252597 IGLV1-51P01701 117 aa8.25□□□□□ -1.09
USHBP1-201ENST00000252597 CCKP06307 115 aa8.25□□□□□ -1.09
USHBP1-201ENST00000252597 RBM3P98179 157 aaKnown RBP8.25□□□□□ -1.09
USHBP1-201ENST00000252597 Q6JHZ5 121 aa8.24□□□□□ -1.09
USHBP1-201ENST00000252597 DEFB105AQ8NG35 78 aa8.24□□□□□ -1.09
USHBP1-201ENST00000252597 SPATA3Q8NHX4 192 aa8.24□□□□□ -1.09
USHBP1-201ENST00000252597 C2orf48Q96LS8 159 aa8.23□□□□□ -1.09
USHBP1-201ENST00000252597 JMJD7-PLA2G4BH0Y9G9 81 aa8.23□□□□□ -1.09
USHBP1-201ENST00000252597 Q8NDZ9 215 aa8.23□□□□□ -1.09
USHBP1-201ENST00000252597 HRCT1Q6UXD1 115 aa8.22□□□□□ -1.09
USHBP1-201ENST00000252597 CYSRT1A8MQ03 144 aa8.22□□□□□ -1.09
USHBP1-201ENST00000252597 Q8IZM0 81 aa8.22□□□□□ -1.09
USHBP1-201ENST00000252597 CSNK1G2-AS1Q8NCQ2 148 aa8.22□□□□□ -1.09
USHBP1-201ENST00000252597 CMC4P56277 68 aaPredicted RBP8.21□□□□□ -1.09
USHBP1-201ENST00000252597 IGHV4-28A0A0C4DH34 117 aa8.21□□□□□ -1.1
USHBP1-201ENST00000252597 CD164L2Q6UWJ8 174 aa8.21□□□□□ -1.1
USHBP1-201ENST00000252597 C19orf73Q9NVV2 129 aa8.21□□□□□ -1.1
USHBP1-201ENST00000252597 FAM19A3Q7Z5A8 133 aa8.2□□□□□ -1.1
USHBP1-201ENST00000252597 Q8N9L7 120 aa8.2□□□□□ -1.1
USHBP1-201ENST00000252597 NANOS2P60321 138 aaKnown RBP8.2□□□□□ -1.1
USHBP1-201ENST00000252597 KRTAP1-1Q07627 177 aa8.19□□□□□ -1.1
USHBP1-201ENST00000252597 C4orf26Q17RF5 130 aa8.19□□□□□ -1.1
USHBP1-201ENST00000252597 CRYGAP11844 174 aa8.19□□□□□ -1.1
USHBP1-201ENST00000252597 C5orf47Q569G3 176 aa8.19□□□□□ -1.1
USHBP1-201ENST00000252597 CELA1Q9UNI1 258 aa8.19□□□□□ -1.1
USHBP1-201ENST00000252597 TRBV10-3A0A0K0K1G6 114 aa8.19□□□□□ -1.1
USHBP1-201ENST00000252597 LY6G6DO95868 133 aa8.18□□□□□ -1.1
USHBP1-201ENST00000252597 SMIM9A6NGZ8 99 aa8.18□□□□□ -1.1
USHBP1-201ENST00000252597 ZNF561-AS1K7EIQ3 104 aa8.18□□□□□ -1.1
USHBP1-201ENST00000252597 DPH3Q96FX2 82 aa8.17□□□□□ -1.1
USHBP1-201ENST00000252597 INAFM1C9JVW0 142 aa8.17□□□□□ -1.1
USHBP1-201ENST00000252597 PRB2P02812 416 aaPredicted RBP8.17□□□□□ -1.1
USHBP1-201ENST00000252597 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.16□□□□□ -1.1
USHBP1-201ENST00000252597 CAMK2N2Q96S95 79 aa8.16□□□□□ -1.1
USHBP1-201ENST00000252597 TRAV10A0A0B4J240 114 aa8.16□□□□□ -1.1
USHBP1-201ENST00000252597 X6R8D5 127 aa8.16□□□□□ -1.1
USHBP1-201ENST00000252597 RMI2Q96E14 147 aa8.16□□□□□ -1.1
USHBP1-201ENST00000252597 C3orf84H3BNL1 204 aa8.15□□□□□ -1.1
USHBP1-201ENST00000252597 KIAA0087Q14695 138 aa8.15□□□□□ -1.1
USHBP1-201ENST00000252597 LINC00575Q6W349 94 aa8.15□□□□□ -1.1
USHBP1-201ENST00000252597 TMEM258P61165 79 aa8.14□□□□□ -1.11
USHBP1-201ENST00000252597 DIRC1Q969H9 104 aa8.14□□□□□ -1.11
USHBP1-201ENST00000252597 Q6ZVQ6 151 aa8.13□□□□□ -1.11
USHBP1-201ENST00000252597 A0A1B0GUV1 79 aa8.13□□□□□ -1.11
USHBP1-201ENST00000252597 LINC01547P58512 204 aaPredicted RBP8.13□□□□□ -1.11
USHBP1-201ENST00000252597 TENM3Q9P273 2699 aa8.13□□□□□ -1.11
USHBP1-201ENST00000252597 ANK3Q12955 4377 aaKnown RBP8.13□□□□□ -1.11
USHBP1-201ENST00000252597 RETNQ9HD89 108 aa8.13□□□□□ -1.11
USHBP1-201ENST00000252597 OXTP01178 125 aa8.12□□□□□ -1.11
USHBP1-201ENST00000252597 IGKV2D-24A0A075B6R9 120 aa8.11□□□□□ -1.11
USHBP1-201ENST00000252597 FAM236DA0A1B0GTK5 79 aa8.11□□□□□ -1.11
USHBP1-201ENST00000252597 FAM236CP0DP71 79 aa8.11□□□□□ -1.11
USHBP1-201ENST00000252597 KRTAP10-3P60369 221 aa8.11□□□□□ -1.11
USHBP1-201ENST00000252597 F8WEM9 126 aa8.1□□□□□ -1.11
USHBP1-201ENST00000252597 COX7BP24311 80 aa8.1□□□□□ -1.11
USHBP1-201ENST00000252597 OBSCN-AS1Q96MR7 158 aa8.1□□□□□ -1.11
USHBP1-201ENST00000252597 SPART-AS1P0CW21 52 aa8.09□□□□□ -1.11
USHBP1-201ENST00000252597 WFDC10BQ8IUB3 73 aa8.09□□□□□ -1.11
USHBP1-201ENST00000252597 ZNF73O43830 326 aaPredicted RBP8.09□□□□□ -1.11
USHBP1-201ENST00000252597 Q6ZQT0 140 aa8.09□□□□□ -1.11
USHBP1-201ENST00000252597 C6orf48Q9UBA6 75 aa8.08□□□□□ -1.12
USHBP1-201ENST00000252597 TM2D3Q9BRN9 247 aa8.08□□□□□ -1.12
USHBP1-201ENST00000252597 MPLKIPQ8TAP9 179 aa8.07□□□□□ -1.12
USHBP1-201ENST00000252597 MUC7Q8TAX7 377 aa8.07□□□□□ -1.12
USHBP1-201ENST00000252597 RPL37AP8A6NKH3 93 aa8.07□□□□□ -1.12
USHBP1-201ENST00000252597 NDUFC2O95298 119 aa8.07□□□□□ -1.12
USHBP1-201ENST00000252597 APOC4P55056 127 aa8.07□□□□□ -1.12
USHBP1-201ENST00000252597 COX17Q14061 63 aa8.07□□□□□ -1.12
USHBP1-201ENST00000252597 LYRM9A8MSI8 78 aa8.06□□□□□ -1.12
USHBP1-201ENST00000252597 LRCOL1A6NCL2 159 aa8.05□□□□□ -1.12
USHBP1-201ENST00000252597 BPY2O14599 106 aa8.05□□□□□ -1.12
USHBP1-201ENST00000252597 NREPQ16612 68 aa8.05□□□□□ -1.12
USHBP1-201ENST00000252597 ATP5EP2Q5VTU8 51 aa8.05□□□□□ -1.12
USHBP1-201ENST00000252597 Q6ZRU5 148 aa8.04□□□□□ -1.12
USHBP1-201ENST00000252597 OXLD1Q5BKU9 147 aa8.04□□□□□ -1.12
USHBP1-201ENST00000252597 NKAPP1Q8N9T2 125 aa8.04□□□□□ -1.12
USHBP1-201ENST00000252597 C1orf43Q9BWL3 253 aa8.04□□□□□ -1.12
USHBP1-201ENST00000252597 PKIGQ9Y2B9 76 aa8.04□□□□□ -1.12
USHBP1-201ENST00000252597 LELP1Q5T871 98 aa8.03□□□□□ -1.12
USHBP1-201ENST00000252597 C9orf66Q5T8R8 295 aa8.03□□□□□ -1.12
USHBP1-201ENST00000252597 C16orf95Q9H693 158 aa8.03□□□□□ -1.12
USHBP1-201ENST00000252597 IGHV4-30-4P0DP06 118 aa8.03□□□□□ -1.12
USHBP1-201ENST00000252597 PRR4Q16378 134 aa8.03□□□□□ -1.12
USHBP1-201ENST00000252597 TENM2Q9NT68 2774 aa8.02□□□□□ -1.13
USHBP1-201ENST00000252597 KPRPQ5T749 579 aaPredicted RBP8.02□□□□□ -1.13
USHBP1-201ENST00000252597 TRAV7A0A075B6U4 112 aa8.01□□□□□ -1.13
USHBP1-201ENST00000252597 LYPD5Q6UWN5 251 aa8.01□□□□□ -1.13
USHBP1-201ENST00000252597 Q6ZTC4 211 aa8.01□□□□□ -1.13
USHBP1-201ENST00000252597 LINC00474Q9P2X8 69 aa8□□□□□ -1.13
USHBP1-201ENST00000252597 MRAPQ8TCY5 172 aa8□□□□□ -1.13
USHBP1-201ENST00000252597 CSMD3Q7Z407 3707 aa8□□□□□ -1.13
USHBP1-201ENST00000252597 A0A0U1RQV1 116 aa8□□□□□ -1.13
USHBP1-201ENST00000252597 STAB2Q8WWQ8 2551 aa7.99□□□□□ -1.13
USHBP1-201ENST00000252597 IGLV6-57P01721 117 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms