RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 PCBD2Q9H0N5 130 aa-3.22□□□□□ -2.92
SCN1A-215ENST00000637285 TPT1P8Q9HAU6 139 aa-3.22□□□□□ -2.92
SCN1A-215ENST00000637285 MYO9AB2RTY4 2548 aa-3.22□□□□□ -2.93
SCN1A-215ENST00000637285 ROCK1Q13464 1354 aa-3.23□□□□□ -2.93
SCN1A-215ENST00000637285 WHAMMP3Q1A5X7 153 aa-3.23□□□□□ -2.93
SCN1A-215ENST00000637285 XRN1Q8IZH2 1706 aaKnown RBP-3.23□□□□□ -2.93
SCN1A-215ENST00000637285 SELENOSQ9BQE4 189 aa-3.23□□□□□ -2.93
SCN1A-215ENST00000637285 NCOA3Q9Y6Q9 1424 aa-3.23□□□□□ -2.93
SCN1A-215ENST00000637285 PIGBOS1A0A0B4J2F0 54 aa-3.24□□□□□ -2.93
SCN1A-215ENST00000637285 A0A1B0GX51 115 aa-3.24□□□□□ -2.93
SCN1A-215ENST00000637285 FGF7P21781 194 aa-3.24□□□□□ -2.93
SCN1A-215ENST00000637285 EYSQ5T1H1 3165 aa-3.24□□□□□ -2.93
SCN1A-215ENST00000637285 RANBP2P49792 3224 aaKnown RBP-3.24□□□□□ -2.93
SCN1A-215ENST00000637285 CSMD1Q96PZ7 3565 aa-3.24□□□□□ -2.93
SCN1A-215ENST00000637285 CFAP46Q8IYW2 2715 aa-3.24□□□□□ -2.93
SCN1A-215ENST00000637285 A0A1B0GU69 56 aa-3.25□□□□□ -2.93
SCN1A-215ENST00000637285 FAM223AQ8IWN6 122 aa-3.25□□□□□ -2.93
SCN1A-215ENST00000637285 TLN2Q9Y4G6 2542 aa-3.25□□□□□ -2.93
SCN1A-215ENST00000637285 PLEKHH2Q8IVE3 1493 aa-3.26□□□□□ -2.93
SCN1A-215ENST00000637285 TFAMQ00059 246 aaKnown RBP-3.26□□□□□ -2.93
SCN1A-215ENST00000637285 TMEM191AQ9H0A3 160 aa-3.26□□□□□ -2.93
SCN1A-215ENST00000637285 V9GYQ6 96 aa-3.26□□□□□ -2.93
SCN1A-215ENST00000637285 QRICH2Q9H0J4 1663 aa-3.27□□□□□ -2.93
SCN1A-215ENST00000637285 NLRP1Q9C000 1473 aa-3.27□□□□□ -2.93
SCN1A-215ENST00000637285 TMEM238C9JI98 176 aa-3.27□□□□□ -2.93
SCN1A-215ENST00000637285 IGLC6P0CF74 106 aa-3.27□□□□□ -2.93
SCN1A-215ENST00000637285 S100GP29377 79 aa-3.27□□□□□ -2.93
SCN1A-215ENST00000637285 SNCAP37840 140 aa-3.27□□□□□ -2.93
SCN1A-215ENST00000637285 COPZ2Q9P299 210 aa-3.27□□□□□ -2.93
SCN1A-215ENST00000637285 TET3O43151 1660 aa-3.27□□□□□ -2.93
SCN1A-215ENST00000637285 MYH6P13533 1939 aa-3.28□□□□□ -2.93
SCN1A-215ENST00000637285 ARL2-SNX15V9GYD0 113 aa-3.28□□□□□ -2.93
SCN1A-215ENST00000637285 LRBAP50851 2863 aa-3.28□□□□□ -2.93
SCN1A-215ENST00000637285 BCORQ6W2J9 1755 aa-3.28□□□□□ -2.93
SCN1A-215ENST00000637285 MYH7P12883 1935 aa-3.29□□□□□ -2.94
SCN1A-215ENST00000637285 MYOM1P52179 1685 aa-3.29□□□□□ -2.94
SCN1A-215ENST00000637285 CHMP6Q96FZ7 201 aa-3.29□□□□□ -2.94
SCN1A-215ENST00000637285 CLIP1P30622 1438 aa-3.29□□□□□ -2.94
SCN1A-215ENST00000637285 CDK5RAP2Q96SN8 1893 aa-3.3□□□□□ -2.94
SCN1A-215ENST00000637285 MYOZ3Q8TDC0 251 aa-3.3□□□□□ -2.94
SCN1A-215ENST00000637285 SKA2Q8WVK7 121 aaPredicted RBP-3.3□□□□□ -2.94
SCN1A-215ENST00000637285 ARHGEF5Q12774 1597 aa-3.3□□□□□ -2.94
SCN1A-215ENST00000637285 PSME4Q14997 1843 aa-3.3□□□□□ -2.94
SCN1A-215ENST00000637285 CHKB-CPT1BH3BT56 60 aa-3.31□□□□□ -2.94
SCN1A-215ENST00000637285 C5orf38Q86SI9 138 aa-3.31□□□□□ -2.94
SCN1A-215ENST00000637285 KCNRGQ8N5I3 272 aa-3.31□□□□□ -2.94
SCN1A-215ENST00000637285 H7BZZ5 65 aa-3.32□□□□□ -2.94
SCN1A-215ENST00000637285 EDC4Q6P2E9 1401 aaKnown RBP-3.33□□□□□ -2.94
SCN1A-215ENST00000637285 A0A1B0GWA3 101 aa-3.33□□□□□ -2.94
SCN1A-215ENST00000637285 G0S2P27469 103 aa-3.33□□□□□ -2.94
SCN1A-215ENST00000637285 SPEF2Q9C093 1822 aa-3.33□□□□□ -2.94
SCN1A-215ENST00000637285 TRRAPQ9Y4A5 3859 aa-3.34□□□□□ -2.94
SCN1A-215ENST00000637285 OVOS2A0A0J9YW53 1432 aa-3.34□□□□□ -2.94
SCN1A-215ENST00000637285 OVOS2Q6IE36 1432 aa-3.34□□□□□ -2.94
SCN1A-215ENST00000637285 SPTY2D1-AS1A0A0U1RR47 76 aa-3.34□□□□□ -2.94
SCN1A-215ENST00000637285 LINC00694P0DN24 101 aa-3.34□□□□□ -2.94
SCN1A-215ENST00000637285 GUCA1AP43080 201 aaPredicted RBP-3.34□□□□□ -2.94
SCN1A-215ENST00000637285 CCDC153Q494R4 210 aa-3.34□□□□□ -2.94
SCN1A-215ENST00000637285 C6orf201Q7Z4U5 140 aa-3.34□□□□□ -2.94
SCN1A-215ENST00000637285 BPTFQ12830 3046 aa-3.34□□□□□ -2.94
SCN1A-215ENST00000637285 ALKQ9UM73 1620 aa-3.34□□□□□ -2.94
SCN1A-215ENST00000637285 MBD5Q9P267 1494 aa-3.35□□□□□ -2.94
SCN1A-215ENST00000637285 A0A1B0GV72 72 aa-3.35□□□□□ -2.95
SCN1A-215ENST00000637285 MORN2Q502X0 79 aa-3.35□□□□□ -2.95
SCN1A-215ENST00000637285 C9orf153Q5TBE3 101 aa-3.35□□□□□ -2.95
SCN1A-215ENST00000637285 UQCR10Q9UDW1 63 aa-3.35□□□□□ -2.95
SCN1A-215ENST00000637285 A0A087WVE0 104 aa-3.36□□□□□ -2.95
SCN1A-215ENST00000637285 DBIP07108 87 aaKnown RBP-3.36□□□□□ -2.95
SCN1A-215ENST00000637285 AIF1LQ9BQI0 150 aa-3.36□□□□□ -2.95
SCN1A-215ENST00000637285 MT1EP04732 61 aa-3.37□□□□□ -2.95
SCN1A-215ENST00000637285 C12orf73Q69YU5 71 aa-3.37□□□□□ -2.95
SCN1A-215ENST00000637285 LRRC37AA6NMS7 1700 aa-3.37□□□□□ -2.95
SCN1A-215ENST00000637285 ADGRL2O95490 1459 aa-3.38□□□□□ -2.95
SCN1A-215ENST00000637285 J3QR89 54 aa-3.38□□□□□ -2.95
SCN1A-215ENST00000637285 KIAA1551Q9HCM1 1747 aa-3.39□□□□□ -2.95
SCN1A-215ENST00000637285 E5RI56 91 aa-3.39□□□□□ -2.95
SCN1A-215ENST00000637285 SMR3BP02814 79 aaPredicted RBP-3.39□□□□□ -2.95
SCN1A-215ENST00000637285 TSPAN19P0C672 248 aa-3.39□□□□□ -2.95
SCN1A-215ENST00000637285 SPANXCQ9NY87 97 aa-3.39□□□□□ -2.95
SCN1A-215ENST00000637285 SMPXQ9UHP9 88 aa-3.39□□□□□ -2.95
SCN1A-215ENST00000637285 SMG6Q86US8 1419 aaKnown RBP-3.39□□□□□ -2.95
SCN1A-215ENST00000637285 DYNC2H1Q8NCM8 4307 aaKnown RBP-3.4□□□□□ -2.95
SCN1A-215ENST00000637285 FAM223BA6NKX1 122 aa-3.4□□□□□ -2.95
SCN1A-215ENST00000637285 K7ERU9 68 aa-3.4□□□□□ -2.95
SCN1A-215ENST00000637285 SAA2P0DJI9 122 aaPredicted RBP-3.4□□□□□ -2.95
SCN1A-215ENST00000637285 GNG10P50151 68 aa-3.4□□□□□ -2.95
SCN1A-215ENST00000637285 SMIM3Q9BZL3 60 aa-3.4□□□□□ -2.95
SCN1A-215ENST00000637285 GINS2Q9Y248 185 aa-3.4□□□□□ -2.95
SCN1A-215ENST00000637285 HSPB11Q9Y547 144 aa-3.4□□□□□ -2.95
SCN1A-215ENST00000637285 EHBP1L1Q8N3D4 1523 aa-3.4□□□□□ -2.95
SCN1A-215ENST00000637285 PRLHP81277 87 aa-3.41□□□□□ -2.96
SCN1A-215ENST00000637285 LINC00846Q9NV44 126 aa-3.41□□□□□ -2.96
SCN1A-215ENST00000637285 SCN7AQ01118 1682 aa-3.41□□□□□ -2.96
SCN1A-215ENST00000637285 SMG1Q96Q15 3661 aaKnown RBP-3.41□□□□□ -2.96
SCN1A-215ENST00000637285 SPTAN1Q13813 2472 aaKnown RBP-3.42□□□□□ -2.96
SCN1A-215ENST00000637285 TSTD3H0UI37 97 aa-3.42□□□□□ -2.96
SCN1A-215ENST00000637285 MT1GP13640 62 aa-3.42□□□□□ -2.96
SCN1A-215ENST00000637285 NMSQ5H8A3 153 aa-3.42□□□□□ -2.96
SCN1A-215ENST00000637285 MT1LQ93083 61 aa-3.42□□□□□ -2.96
SCN1A-215ENST00000637285 NUP188Q5SRE5 1749 aa-3.42□□□□□ -2.96
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms