RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 CKS1BP61024 79 aa9.15□□□□□ -0.94
LINC00643-205ENST00000623219 GAGE2EQ4V326 116 aa9.15□□□□□ -0.94
LINC00643-205ENST00000623219 FA2HQ7L5A8 372 aa9.15□□□□□ -0.94
LINC00643-205ENST00000623219 PHF5AQ7RTV0 110 aaKnown RBP9.15□□□□□ -0.94
LINC00643-205ENST00000623219 TOMM7Q9P0U1 55 aa9.15□□□□□ -0.94
LINC00643-205ENST00000623219 GAGE2DQ9UEU5 116 aa9.15□□□□□ -0.94
LINC00643-205ENST00000623219 PSORS1C2Q9UIG4 136 aa9.15□□□□□ -0.94
LINC00643-205ENST00000623219 FAM168BA1KXE4 195 aa9.14□□□□□ -0.95
LINC00643-205ENST00000623219 REG3GQ6UW15 175 aa9.14□□□□□ -0.95
LINC00643-205ENST00000623219 LINC01600Q96MT4 127 aa9.14□□□□□ -0.95
LINC00643-205ENST00000623219 TINCRA0A1B0GVN0 87 aa9.13□□□□□ -0.95
LINC00643-205ENST00000623219 SRSF9Q13242 221 aaKnown RBP eCLIP9.13□□□□□ -0.95
LINC00643-205ENST00000623219 NDUFA5Q16718 116 aa9.13□□□□□ -0.95
LINC00643-205ENST00000623219 C6orf226Q5I0X4 101 aa9.13□□□□□ -0.95
LINC00643-205ENST00000623219 FAM19A5Q7Z5A7 132 aaPredicted RBP9.13□□□□□ -0.95
LINC00643-205ENST00000623219 IGLV5-45A0A087WSX0 123 aa9.12□□□□□ -0.95
LINC00643-205ENST00000623219 SNAPINO95295 136 aa9.12□□□□□ -0.95
LINC00643-205ENST00000623219 APOC3P02656 99 aa9.12□□□□□ -0.95
LINC00643-205ENST00000623219 CXCL5P42830 114 aa9.12□□□□□ -0.95
LINC00643-205ENST00000623219 SVBPQ8N300 66 aa9.12□□□□□ -0.95
LINC00643-205ENST00000623219 LINC00469Q8N7U9 141 aa9.12□□□□□ -0.95
LINC00643-205ENST00000623219 SMIM1B2RUZ4 78 aa9.11□□□□□ -0.95
LINC00643-205ENST00000623219 F8VRH5 84 aa9.11□□□□□ -0.95
LINC00643-205ENST00000623219 M0QXV9 152 aa9.11□□□□□ -0.95
LINC00643-205ENST00000623219 C1orf137Q5JT78 98 aa9.11□□□□□ -0.95
LINC00643-205ENST00000623219 PLA2G2DQ9UNK4 145 aa9.11□□□□□ -0.95
LINC00643-205ENST00000623219 TRAPPC1Q9Y5R8 145 aa9.11□□□□□ -0.95
LINC00643-205ENST00000623219 PMVKQ15126 192 aa9.1□□□□□ -0.95
LINC00643-205ENST00000623219 PDZD11Q5EBL8 140 aa9.1□□□□□ -0.95
LINC00643-205ENST00000623219 C9orf129Q5T035 196 aaKnown RBP9.1□□□□□ -0.95
LINC00643-205ENST00000623219 C18orf32Q8TCD1 76 aa9.1□□□□□ -0.95
LINC00643-205ENST00000623219 CST9LQ9H4G1 147 aa9.1□□□□□ -0.95
LINC00643-205ENST00000623219 KRTAP7-1Q8IUC3 87 aa9.09□□□□□ -0.95
LINC00643-205ENST00000623219 A0A096LNJ9 63 aa9.08□□□□□ -0.96
LINC00643-205ENST00000623219 HBDP02042 147 aa9.07□□□□□ -0.96
LINC00643-205ENST00000623219 LINC00614P0C842 121 aa9.07□□□□□ -0.96
LINC00643-205ENST00000623219 COX7B2Q8TF08 81 aa9.07□□□□□ -0.96
LINC00643-205ENST00000623219 URB1-AS1Q96HZ7 61 aa9.07□□□□□ -0.96
LINC00643-205ENST00000623219 IGLV7-43P04211 117 aa9.06□□□□□ -0.96
LINC00643-205ENST00000623219 UBE2BP63146 152 aa9.06□□□□□ -0.96
LINC00643-205ENST00000623219 KRTAP11-1Q8IUC1 163 aa9.06□□□□□ -0.96
LINC00643-205ENST00000623219 H3BRM9 83 aa9.05□□□□□ -0.96
LINC00643-205ENST00000623219 SPINK8P0C7L1 97 aa9.05□□□□□ -0.96
LINC00643-205ENST00000623219 IGLC3P0DOY3 106 aa9.05□□□□□ -0.96
LINC00643-205ENST00000623219 RAB5BP61020 215 aa9.05□□□□□ -0.96
LINC00643-205ENST00000623219 ODF1Q14990 250 aa9.04□□□□□ -0.96
LINC00643-205ENST00000623219 DIRC1Q969H9 104 aa9.04□□□□□ -0.96
LINC00643-205ENST00000623219 KRTAP10-8P60410 259 aa9.03□□□□□ -0.96
LINC00643-205ENST00000623219 PMCHL1Q16048 86 aa9.03□□□□□ -0.96
LINC00643-205ENST00000623219 YPEL4Q96NS1 127 aa9.03□□□□□ -0.96
LINC00643-205ENST00000623219 XAGE1AQ9HD64 81 aa9.03□□□□□ -0.96
LINC00643-205ENST00000623219 ATP5LO75964 103 aa9.02□□□□□ -0.97
LINC00643-205ENST00000623219 NDUFA6P56556 154 aa9.02□□□□□ -0.97
LINC00643-205ENST00000623219 H0Y9J4 135 aa9.01□□□□□ -0.97
LINC00643-205ENST00000623219 ZNF22P17026 224 aaPredicted RBP9.01□□□□□ -0.97
LINC00643-205ENST00000623219 TP73-AS1Q9UF72 201 aa9.01□□□□□ -0.97
LINC00643-205ENST00000623219 IGLV5-39A0A0G2JS06 123 aa9□□□□□ -0.97
LINC00643-205ENST00000623219 C22orf24Q9Y442 160 aa9□□□□□ -0.97
LINC00643-205ENST00000623219 NUPR1O60356 82 aa8.99□□□□□ -0.97
LINC00643-205ENST00000623219 LBHQ53QV2 105 aaPredicted RBP8.99□□□□□ -0.97
LINC00643-205ENST00000623219 CHCHD1Q96BP2 118 aaKnown RBP8.99□□□□□ -0.97
LINC00643-205ENST00000623219 MRPL55Q7Z7F7 128 aaKnown RBP8.98□□□□□ -0.97
LINC00643-205ENST00000623219 C11orf86A6NJI1 115 aa8.96□□□□□ -0.98
LINC00643-205ENST00000623219 BAGE3Q86Y29 109 aa8.96□□□□□ -0.98
LINC00643-205ENST00000623219 CBLN2Q8IUK8 224 aa8.96□□□□□ -0.98
LINC00643-205ENST00000623219 IGLV5-37A0A075B6J1 123 aa8.95□□□□□ -0.98
LINC00643-205ENST00000623219 SFTA2Q6UW10 78 aa8.95□□□□□ -0.98
LINC00643-205ENST00000623219 TRAV12-1A0A0B4J245 112 aa8.94□□□□□ -0.98
LINC00643-205ENST00000623219 TMEM170BQ5T4T1 132 aa8.94□□□□□ -0.98
LINC00643-205ENST00000623219 CHTOPQ9Y3Y2 248 aaKnown RBP8.94□□□□□ -0.98
LINC00643-205ENST00000623219 LRP2P98164 4655 aa8.93□□□□□ -0.98
LINC00643-205ENST00000623219 IGLV1-50A0A075B6I6 118 aa8.93□□□□□ -0.98
LINC00643-205ENST00000623219 ZNF861PO60384 105 aa8.93□□□□□ -0.98
LINC00643-205ENST00000623219 KRTAP1-4P0C5Y4 121 aa8.93□□□□□ -0.98
LINC00643-205ENST00000623219 COX17Q14061 63 aa8.93□□□□□ -0.98
LINC00643-205ENST00000623219 NKAPP1Q8N9T2 125 aa8.93□□□□□ -0.98
LINC00643-205ENST00000623219 IFI27L1Q96BM0 104 aa8.93□□□□□ -0.98
LINC00643-205ENST00000623219 ERG28Q9UKR5 140 aa8.93□□□□□ -0.98
LINC00643-205ENST00000623219 PFN2P35080 140 aa8.92□□□□□ -0.98
LINC00643-205ENST00000623219 PRR26Q8N8Z3 221 aa8.92□□□□□ -0.98
LINC00643-205ENST00000623219 LINC00167Q96N53 147 aa8.92□□□□□ -0.98
LINC00643-205ENST00000623219 BCE1O60756 84 aa8.91□□□□□ -0.98
LINC00643-205ENST00000623219 HSBP1O75506 76 aa8.91□□□□□ -0.98
LINC00643-205ENST00000623219 ZNF625Q96I27 306 aaPredicted RBP8.9□□□□□ -0.98
LINC00643-205ENST00000623219 TMEM223A0PJW6 202 aa8.89□□□□□ -0.99
LINC00643-205ENST00000623219 RPL37AP8A6NKH3 93 aa8.89□□□□□ -0.99
LINC00643-205ENST00000623219 TRGC2P03986 189 aa8.89□□□□□ -0.99
LINC00643-205ENST00000623219 RPL13AP40429 203 aaKnown RBP8.89□□□□□ -0.99
LINC00643-205ENST00000623219 RPL28P46779 137 aaKnown RBP8.89□□□□□ -0.99
LINC00643-205ENST00000623219 SND1-IT1Q9HBX3 110 aa8.89□□□□□ -0.99
LINC00643-205ENST00000623219 GAGE10A6NGK3 116 aa8.88□□□□□ -0.99
LINC00643-205ENST00000623219 FAM19A2Q8N3H0 131 aa8.88□□□□□ -0.99
LINC00643-205ENST00000623219 VPREB1P12018 145 aa8.87□□□□□ -0.99
LINC00643-205ENST00000623219 SLC7A5P1Q8MH63 180 aa8.87□□□□□ -0.99
LINC00643-205ENST00000623219 RPL24P83731 157 aaKnown RBP8.86□□□□□ -0.99
LINC00643-205ENST00000623219 IGKV2-28A0A075B6P5 120 aa8.85□□□□□ -0.99
LINC00643-205ENST00000623219 SERF1AO75920 110 aa8.85□□□□□ -0.99
LINC00643-205ENST00000623219 IGKV2D-28P01615 120 aa8.85□□□□□ -0.99
LINC00643-205ENST00000623219 LINC00310P59036 64 aa8.85□□□□□ -0.99
LINC00643-205ENST00000623219 SCO1O75880 301 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms