RNA–Protein interactions for RNA: ENST00000606213.5

PTPRN-219, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-219ENST00000606213 NDUFC2-KCTD14E9PQ53 114 aa14.59□□□□□ -0.07
PTPRN-219ENST00000606213 PMVKQ15126 192 aa14.59□□□□□ -0.07
PTPRN-219ENST00000606213 CST9LQ9H4G1 147 aa14.59□□□□□ -0.07
PTPRN-219ENST00000606213 LRP1Q07954 4544 aaKnown RBP14.59□□□□□ -0.07
PTPRN-219ENST00000606213 LINC00614P0C842 121 aa14.58□□□□□ -0.08
PTPRN-219ENST00000606213 C18orf32Q8TCD1 76 aa14.58□□□□□ -0.08
PTPRN-219ENST00000606213 NDUFA6P56556 154 aa14.57□□□□□ -0.08
PTPRN-219ENST00000606213 RAB5BP61020 215 aa14.57□□□□□ -0.08
PTPRN-219ENST00000606213 PHF5AQ7RTV0 110 aaKnown RBP14.57□□□□□ -0.08
PTPRN-219ENST00000606213 FAM19A5Q7Z5A7 132 aaPredicted RBP14.57□□□□□ -0.08
PTPRN-219ENST00000606213 FAM168BA1KXE4 195 aa14.54□□□□□ -0.08
PTPRN-219ENST00000606213 HBDP02042 147 aa14.54□□□□□ -0.08
PTPRN-219ENST00000606213 CXCL5P42830 114 aa14.54□□□□□ -0.08
PTPRN-219ENST00000606213 SPINK6Q6UWN8 80 aa14.54□□□□□ -0.08
PTPRN-219ENST00000606213 PKHD1L1Q86WI1 4243 aa14.53□□□□□ -0.08
PTPRN-219ENST00000606213 F8VRH5 84 aa14.53□□□□□ -0.08
PTPRN-219ENST00000606213 H3BRM9 83 aa14.53□□□□□ -0.08
PTPRN-219ENST00000606213 PDZD11Q5EBL8 140 aa14.53□□□□□ -0.08
PTPRN-219ENST00000606213 SERTAD4-AS1Q5TG53 156 aa14.53□□□□□ -0.08
PTPRN-219ENST00000606213 FAT3Q8TDW7 4589 aa14.53□□□□□ -0.08
PTPRN-219ENST00000606213 SMIM1B2RUZ4 78 aa14.52□□□□□ -0.09
PTPRN-219ENST00000606213 COX7B2Q8TF08 81 aa14.52□□□□□ -0.09
PTPRN-219ENST00000606213 PSORS1C2Q9UIG4 136 aa14.52□□□□□ -0.09
PTPRN-219ENST00000606213 PMCHL1Q16048 86 aa14.51□□□□□ -0.09
PTPRN-219ENST00000606213 C1orf137Q5JT78 98 aa14.51□□□□□ -0.09
PTPRN-219ENST00000606213 REG3GQ6UW15 175 aa14.51□□□□□ -0.09
PTPRN-219ENST00000606213 IGLV5-45A0A087WSX0 123 aa14.5□□□□□ -0.09
PTPRN-219ENST00000606213 SPINK8P0C7L1 97 aa14.5□□□□□ -0.09
PTPRN-219ENST00000606213 M0QXV9 152 aa14.49□□□□□ -0.09
PTPRN-219ENST00000606213 UBE2BP63146 152 aa14.49□□□□□ -0.09
PTPRN-219ENST00000606213 URB1-AS1Q96HZ7 61 aa14.49□□□□□ -0.09
PTPRN-219ENST00000606213 A0A096LNJ9 63 aa14.48□□□□□ -0.09
PTPRN-219ENST00000606213 ATP5LO75964 103 aa14.48□□□□□ -0.09
PTPRN-219ENST00000606213 C9orf129Q5T035 196 aaKnown RBP14.47□□□□□ -0.09
PTPRN-219ENST00000606213 SRSF9Q13242 221 aaKnown RBP eCLIP14.45□□□□□ -0.1
PTPRN-219ENST00000606213 CBLN2Q8IUK8 224 aa14.45□□□□□ -0.1
PTPRN-219ENST00000606213 XAGE1AQ9HD64 81 aa14.45□□□□□ -0.1
PTPRN-219ENST00000606213 IGLC3P0DOY3 106 aa14.44□□□□□ -0.1
PTPRN-219ENST00000606213 BAGE3Q86Y29 109 aa14.44□□□□□ -0.1
PTPRN-219ENST00000606213 YPEL4Q96NS1 127 aa14.44□□□□□ -0.1
PTPRN-219ENST00000606213 MT1HL1P0DM35 61 aa14.43□□□□□ -0.1
PTPRN-219ENST00000606213 LINC01600Q96MT4 127 aa14.43□□□□□ -0.1
PTPRN-219ENST00000606213 CHCHD1Q96BP2 118 aaKnown RBP14.42□□□□□ -0.1
PTPRN-219ENST00000606213 KRTAP7-1Q8IUC3 87 aa14.4□□□□□ -0.1
PTPRN-219ENST00000606213 SLC7A5P1Q8MH63 180 aa14.4□□□□□ -0.1
PTPRN-219ENST00000606213 IGLV7-43P04211 117 aa14.39□□□□□ -0.11
PTPRN-219ENST00000606213 ZNF22P17026 224 aaPredicted RBP14.38□□□□□ -0.11
PTPRN-219ENST00000606213 LBHQ53QV2 105 aaPredicted RBP14.38□□□□□ -0.11
PTPRN-219ENST00000606213 TMEM170BQ5T4T1 132 aa14.38□□□□□ -0.11
PTPRN-219ENST00000606213 PLA2G2DQ9UNK4 145 aa14.38□□□□□ -0.11
PTPRN-219ENST00000606213 HSBP1O75506 76 aa14.37□□□□□ -0.11
PTPRN-219ENST00000606213 CHTOPQ9Y3Y2 248 aaKnown RBP14.37□□□□□ -0.11
PTPRN-219ENST00000606213 C22orf24Q9Y442 160 aa14.37□□□□□ -0.11
PTPRN-219ENST00000606213 KRTAP11-1Q8IUC1 163 aa14.36□□□□□ -0.11
PTPRN-219ENST00000606213 DIRC1Q969H9 104 aa14.36□□□□□ -0.11
PTPRN-219ENST00000606213 HMCN2Q8NDA2 5059 aa14.35□□□□□ -0.11
PTPRN-219ENST00000606213 IGLV5-39A0A0G2JS06 123 aa14.35□□□□□ -0.11
PTPRN-219ENST00000606213 C11orf86A6NJI1 115 aa14.35□□□□□ -0.11
PTPRN-219ENST00000606213 TRGC2P03986 189 aa14.34□□□□□ -0.11
PTPRN-219ENST00000606213 IFI27L1Q96BM0 104 aa14.34□□□□□ -0.11
PTPRN-219ENST00000606213 PFN2P35080 140 aa14.33□□□□□ -0.12
PTPRN-219ENST00000606213 MRPL55Q7Z7F7 128 aaKnown RBP14.32□□□□□ -0.12
PTPRN-219ENST00000606213 TP73-AS1Q9UF72 201 aa14.31□□□□□ -0.12
PTPRN-219ENST00000606213 SFTA2Q6UW10 78 aa14.3□□□□□ -0.12
PTPRN-219ENST00000606213 FAM19A2Q8N3H0 131 aa14.3□□□□□ -0.12
PTPRN-219ENST00000606213 TRAV12-1A0A0B4J245 112 aa14.29□□□□□ -0.12
PTPRN-219ENST00000606213 NKAPP1Q8N9T2 125 aa14.29□□□□□ -0.12
PTPRN-219ENST00000606213 NUPR1O60356 82 aa14.28□□□□□ -0.12
PTPRN-219ENST00000606213 H0Y9J4 135 aa14.27□□□□□ -0.13
PTPRN-219ENST00000606213 ZNF625Q96I27 306 aaPredicted RBP14.27□□□□□ -0.13
PTPRN-219ENST00000606213 ERG28Q9UKR5 140 aa14.27□□□□□ -0.13
PTPRN-219ENST00000606213 H0Y8G0 127 aa14.26□□□□□ -0.13
PTPRN-219ENST00000606213 ODF1Q14990 250 aa14.26□□□□□ -0.13
PTPRN-219ENST00000606213 KRTAP10-8P60410 259 aa14.25□□□□□ -0.13
PTPRN-219ENST00000606213 COX17Q14061 63 aa14.25□□□□□ -0.13
PTPRN-219ENST00000606213 GAGE10A6NGK3 116 aa14.24□□□□□ -0.13
PTPRN-219ENST00000606213 SERF1AO75920 110 aa14.24□□□□□ -0.13
PTPRN-219ENST00000606213 LEPROTL1O95214 131 aa14.24□□□□□ -0.13
PTPRN-219ENST00000606213 RPL37AP8A6NKH3 93 aa14.23□□□□□ -0.13
PTPRN-219ENST00000606213 LINC00167Q96N53 147 aa14.23□□□□□ -0.13
PTPRN-219ENST00000606213 TMEM223A0PJW6 202 aa14.21□□□□□ -0.13
PTPRN-219ENST00000606213 ZNF861PO60384 105 aa14.21□□□□□ -0.13
PTPRN-219ENST00000606213 SND1-IT1Q9HBX3 110 aa14.21□□□□□ -0.13
PTPRN-219ENST00000606213 COLCA2A8K830 154 aa14.2□□□□□ -0.14
PTPRN-219ENST00000606213 IGLV5-37A0A075B6J1 123 aa14.19□□□□□ -0.14
PTPRN-219ENST00000606213 LINC00158P58513 81 aa14.19□□□□□ -0.14
PTPRN-219ENST00000606213 RPL24P83731 157 aaKnown RBP14.19□□□□□ -0.14
PTPRN-219ENST00000606213 HSPB8Q9UJY1 196 aa14.19□□□□□ -0.14
PTPRN-219ENST00000606213 UBR4Q5T4S7 5183 aa14.18□□□□□ -0.14
PTPRN-219ENST00000606213 BCE1O60756 84 aa14.18□□□□□ -0.14
PTPRN-219ENST00000606213 ATP6V1G1O75348 118 aa14.18□□□□□ -0.14
PTPRN-219ENST00000606213 RPL28P46779 137 aaKnown RBP14.18□□□□□ -0.14
PTPRN-219ENST00000606213 PRR26Q8N8Z3 221 aa14.17□□□□□ -0.14
PTPRN-219ENST00000606213 FABP4P15090 132 aa14.16□□□□□ -0.14
PTPRN-219ENST00000606213 TNXBP22105 4242 aa14.15□□□□□ -0.14
PTPRN-219ENST00000606213 IGLV1-50A0A075B6I6 118 aa14.14□□□□□ -0.15
PTPRN-219ENST00000606213 IGKV2-28A0A075B6P5 120 aa14.14□□□□□ -0.15
PTPRN-219ENST00000606213 A0A0U1RRA0 63 aa14.14□□□□□ -0.15
PTPRN-219ENST00000606213 IGKV2D-28P01615 120 aa14.14□□□□□ -0.15
PTPRN-219ENST00000606213 LINC00310P59036 64 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms