RNA–Protein interactions for RNA: ENST00000601324.1

VRK3-222, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-222ENST00000601324 Q86TA4 180 aa2.23□□□□□ -2.05
VRK3-222ENST00000601324 TCTE3Q8IZS6 198 aa2.23□□□□□ -2.05
VRK3-222ENST00000601324 LINC00337Q8N6G1 96 aa2.23□□□□□ -2.05
VRK3-222ENST00000601324 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.23□□□□□ -2.05
VRK3-222ENST00000601324 BIN3Q9NQY0 253 aa2.23□□□□□ -2.05
VRK3-222ENST00000601324 MRPL35Q9NZE8 188 aaKnown RBP2.23□□□□□ -2.05
VRK3-222ENST00000601324 CHTOPQ9Y3Y2 248 aaKnown RBP2.23□□□□□ -2.05
VRK3-222ENST00000601324 LSM5Q9Y4Y9 91 aaKnown RBP2.23□□□□□ -2.05
VRK3-222ENST00000601324 A6NDN8 102 aa2.22□□□□□ -2.05
VRK3-222ENST00000601324 LINC00587B1AMM8 73 aa2.22□□□□□ -2.05
VRK3-222ENST00000601324 G3V3Q6 166 aa2.22□□□□□ -2.05
VRK3-222ENST00000601324 M0QXV9 152 aa2.22□□□□□ -2.05
VRK3-222ENST00000601324 SCO1O75880 301 aa2.22□□□□□ -2.05
VRK3-222ENST00000601324 S100A8P05109 93 aa2.22□□□□□ -2.05
VRK3-222ENST00000601324 STAG3L2P0CL84 134 aa2.22□□□□□ -2.05
VRK3-222ENST00000601324 STAG3L3P0CL85 134 aa2.22□□□□□ -2.05
VRK3-222ENST00000601324 RAB4AP20338 218 aa2.22□□□□□ -2.05
VRK3-222ENST00000601324 FAUP35544 74 aaKnown RBP2.22□□□□□ -2.05
VRK3-222ENST00000601324 RPL18AQ02543 176 aaKnown RBP2.22□□□□□ -2.05
VRK3-222ENST00000601324 Q5BKY6 102 aa2.22□□□□□ -2.05
VRK3-222ENST00000601324 CLLU1Q5K131 121 aa2.22□□□□□ -2.05
VRK3-222ENST00000601324 EIF5AL1Q6IS14 154 aaKnown RBP2.22□□□□□ -2.05
VRK3-222ENST00000601324 ISOC2Q96AB3 205 aa2.22□□□□□ -2.05
VRK3-222ENST00000601324 KRTAP4-3Q9BYR4 195 aa2.22□□□□□ -2.05
VRK3-222ENST00000601324 ACTR3CQ9C0K3 210 aaPredicted RBP2.22□□□□□ -2.05
VRK3-222ENST00000601324 SMDT1Q9H4I9 107 aa2.22□□□□□ -2.05
VRK3-222ENST00000601324 KCNIP2Q9NS61 270 aa2.22□□□□□ -2.05
VRK3-222ENST00000601324 V9GYH0 126 aa2.22□□□□□ -2.05
VRK3-222ENST00000601324 MDN1Q9NU22 5596 aa2.22□□□□□ -2.05
VRK3-222ENST00000601324 TMSB15BA0A087X1C1 80 aa2.21□□□□□ -2.06
VRK3-222ENST00000601324 MUC21A0A140T8X8 626 aa2.21□□□□□ -2.06
VRK3-222ENST00000601324 M0R2T5 61 aa2.21□□□□□ -2.06
VRK3-222ENST00000601324 HMGB3O15347 200 aaKnown RBP2.21□□□□□ -2.06
VRK3-222ENST00000601324 NUPR1O60356 82 aa2.21□□□□□ -2.06
VRK3-222ENST00000601324 SMIM6P0DI80 62 aa2.21□□□□□ -2.06
VRK3-222ENST00000601324 ARL14EPLP0DKL9 152 aa2.21□□□□□ -2.06
VRK3-222ENST00000601324 NTF3P20783 257 aa2.21□□□□□ -2.06
VRK3-222ENST00000601324 RPL35P42766 123 aaKnown RBP2.21□□□□□ -2.06
VRK3-222ENST00000601324 AKR1D1P51857 326 aa2.21□□□□□ -2.06
VRK3-222ENST00000601324 TEX261Q6UWH6 196 aa2.21□□□□□ -2.06
VRK3-222ENST00000601324 COMMD7Q86VX2 200 aa2.21□□□□□ -2.06
VRK3-222ENST00000601324 CBLN2Q8IUK8 224 aa2.21□□□□□ -2.06
VRK3-222ENST00000601324 TOMM5Q8N4H5 51 aa2.21□□□□□ -2.06
VRK3-222ENST00000601324 TCEAL7Q9BRU2 100 aa2.21□□□□□ -2.06
VRK3-222ENST00000601324 CCDC32Q9BV29 185 aa2.21□□□□□ -2.06
VRK3-222ENST00000601324 GEMIN7Q9H840 131 aaKnown RBP2.21□□□□□ -2.06
VRK3-222ENST00000601324 MED9Q9NWA0 146 aa2.21□□□□□ -2.06
VRK3-222ENST00000601324 C6orf48Q9UBA6 75 aa2.21□□□□□ -2.06
VRK3-222ENST00000601324 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.2□□□□□ -2.06
VRK3-222ENST00000601324 IGKV2-29A2NJV5 120 aaPredicted RBP2.2□□□□□ -2.06
VRK3-222ENST00000601324 BCE1O60756 84 aa2.2□□□□□ -2.06
VRK3-222ENST00000601324 LTAP01374 205 aa2.2□□□□□ -2.06
VRK3-222ENST00000601324 MT2AP02795 61 aa2.2□□□□□ -2.06
VRK3-222ENST00000601324 ZNF25P17030 456 aaPredicted RBP2.2□□□□□ -2.06
VRK3-222ENST00000601324 GCHFRP30047 84 aa2.2□□□□□ -2.06
VRK3-222ENST00000601324 AP3S2P59780 193 aa2.2□□□□□ -2.06
VRK3-222ENST00000601324 UBE2BP63146 152 aa2.2□□□□□ -2.06
VRK3-222ENST00000601324 PCOTHQ58A44 107 aa2.2□□□□□ -2.06
VRK3-222ENST00000601324 RASL11AQ6T310 242 aa2.2□□□□□ -2.06
VRK3-222ENST00000601324 C3orf22Q8N5N4 141 aa2.2□□□□□ -2.06
VRK3-222ENST00000601324 NIT2Q9NQR4 276 aa2.2□□□□□ -2.06
VRK3-222ENST00000601324 CDC42SE2Q9NRR3 84 aa2.2□□□□□ -2.06
VRK3-222ENST00000601324 ZFP30Q9Y2G7 519 aa2.2□□□□□ -2.06
VRK3-222ENST00000601324 A0A1W2PRE2 83 aa2.19□□□□□ -2.06
VRK3-222ENST00000601324 C17orf112F2Z3M2 114 aa2.19□□□□□ -2.06
VRK3-222ENST00000601324 UBE2L6O14933 153 aa2.19□□□□□ -2.06
VRK3-222ENST00000601324 NCR2O95944 276 aa2.19□□□□□ -2.06
VRK3-222ENST00000601324 MT1FP04733 61 aa2.19□□□□□ -2.06
VRK3-222ENST00000601324 IGLC6P0CF74 106 aa2.19□□□□□ -2.06
VRK3-222ENST00000601324 PVALBP20472 110 aaPredicted RBP2.19□□□□□ -2.06
VRK3-222ENST00000601324 RPL28P46779 137 aaKnown RBP2.19□□□□□ -2.06
VRK3-222ENST00000601324 RPL23P62829 140 aaKnown RBP2.19□□□□□ -2.06
VRK3-222ENST00000601324 RNASE13Q5GAN3 156 aaKnown RBP2.19□□□□□ -2.06
VRK3-222ENST00000601324 SPAG11AQ6PDA7 123 aa2.19□□□□□ -2.06
VRK3-222ENST00000601324 UNQ6190/PRO20217Q6UXQ8 127 aa2.19□□□□□ -2.06
VRK3-222ENST00000601324 MRPL52Q86TS9 123 aaKnown RBP2.19□□□□□ -2.06
VRK3-222ENST00000601324 OR2D3Q8NGH3 330 aa2.19□□□□□ -2.06
VRK3-222ENST00000601324 AP1S3Q96PC3 154 aa2.19□□□□□ -2.06
VRK3-222ENST00000601324 C8orf17Q9NRJ1 99 aa2.19□□□□□ -2.06
VRK3-222ENST00000601324 C22orf24Q9Y442 160 aa2.19□□□□□ -2.06
VRK3-222ENST00000601324 HSPB11Q9Y547 144 aa2.19□□□□□ -2.06
VRK3-222ENST00000601324 A8MUU9 505 aa2.18□□□□□ -2.06
VRK3-222ENST00000601324 HSBP1L1C9JCN9 74 aa2.18□□□□□ -2.06
VRK3-222ENST00000601324 COX7A2LO14548 114 aa2.18□□□□□ -2.06
VRK3-222ENST00000601324 TCAPO15273 167 aa2.18□□□□□ -2.06
VRK3-222ENST00000601324 MBP02144 154 aa2.18□□□□□ -2.06
VRK3-222ENST00000601324 SPAG11BQ08648 103 aa2.18□□□□□ -2.06
VRK3-222ENST00000601324 SPANXN1Q5VSR9 72 aa2.18□□□□□ -2.06
VRK3-222ENST00000601324 C9orf62Q8N4C0 152 aa2.18□□□□□ -2.06
VRK3-222ENST00000601324 GATD1Q8NB37 220 aa2.18□□□□□ -2.06
VRK3-222ENST00000601324 SFT2D1Q8WV19 159 aa2.18□□□□□ -2.06
VRK3-222ENST00000601324 IMMP2LQ96T52 175 aa2.18□□□□□ -2.06
VRK3-222ENST00000601324 C2orf88Q9BSF0 95 aa2.18□□□□□ -2.06
VRK3-222ENST00000601324 IGKV2D-26A0A0A0MRZ7 120 aa2.17□□□□□ -2.06
VRK3-222ENST00000601324 IGHV3OR16-9A0A0B4J2B5 98 aa2.17□□□□□ -2.06
VRK3-222ENST00000601324 A0A1B0GV90 55 aa2.17□□□□□ -2.06
VRK3-222ENST00000601324 A0A1W2PPV4 95 aa2.17□□□□□ -2.06
VRK3-222ENST00000601324 NAP1L6A6NFF2 107 aa2.17□□□□□ -2.06
VRK3-222ENST00000601324 C1orf196B1AJZ1 125 aa2.17□□□□□ -2.06
VRK3-222ENST00000601324 CDC34P49427 236 aaPredicted RBP2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms