RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 LINC00482Q8N8I6 264 aa14.04□□□□□ -0.16
SHKBP1-225ENST00000600733 C6orf226Q5I0X4 101 aa14.03□□□□□ -0.16
SHKBP1-225ENST00000600733 A0A087WYN8 130 aa14.02□□□□□ -0.16
SHKBP1-225ENST00000600733 SPATA3Q8NHX4 192 aa14.02□□□□□ -0.17
SHKBP1-225ENST00000600733 PAX4O43316 350 aa14.01□□□□□ -0.17
SHKBP1-225ENST00000600733 SMCR5Q8TEV8 140 aa14.01□□□□□ -0.17
SHKBP1-225ENST00000600733 ACYP1P07311 99 aa14□□□□□ -0.17
SHKBP1-225ENST00000600733 PRO0255Q9UI72 69 aa14□□□□□ -0.17
SHKBP1-225ENST00000600733 MALP21145 153 aa13.99□□□□□ -0.17
SHKBP1-225ENST00000600733 A0A1B0GUV1 79 aa13.99□□□□□ -0.17
SHKBP1-225ENST00000600733 SS18Q15532 418 aa13.99□□□□□ -0.17
SHKBP1-225ENST00000600733 DEFB4AO15263 64 aa13.98□□□□□ -0.17
SHKBP1-225ENST00000600733 ATP5G1P05496 136 aa13.98□□□□□ -0.17
SHKBP1-225ENST00000600733 OR13C6PQ8NH95 151 aa13.98□□□□□ -0.17
SHKBP1-225ENST00000600733 TRBV7-7A0A0K0K1E9 115 aa13.97□□□□□ -0.17
SHKBP1-225ENST00000600733 CCDC179H3BU77 68 aa13.97□□□□□ -0.17
SHKBP1-225ENST00000600733 B5MCH6 92 aa13.97□□□□□ -0.17
SHKBP1-225ENST00000600733 DNAL4O96015 105 aa13.97□□□□□ -0.17
SHKBP1-225ENST00000600733 C9orf129Q5T035 196 aaKnown RBP13.95□□□□□ -0.18
SHKBP1-225ENST00000600733 Q8N3U1 123 aa13.95□□□□□ -0.18
SHKBP1-225ENST00000600733 Q8IZM0 81 aa13.94□□□□□ -0.18
SHKBP1-225ENST00000600733 TENM1Q9UKZ4 2725 aa13.94□□□□□ -0.18
SHKBP1-225ENST00000600733 SMIM9A6NGZ8 99 aa13.94□□□□□ -0.18
SHKBP1-225ENST00000600733 DEFB135Q30KP9 77 aa13.94□□□□□ -0.18
SHKBP1-225ENST00000600733 GAGE2AQ6NT46 116 aa13.94□□□□□ -0.18
SHKBP1-225ENST00000600733 LINC00269Q8N2A0 174 aa13.94□□□□□ -0.18
SHKBP1-225ENST00000600733 H0YGX0 51 aa13.93□□□□□ -0.18
SHKBP1-225ENST00000600733 INAFM2P0DMQ5 153 aa13.93□□□□□ -0.18
SHKBP1-225ENST00000600733 LECT2O14960 151 aa13.93□□□□□ -0.18
SHKBP1-225ENST00000600733 IGLV10-54A0A075B6I4 117 aa13.92□□□□□ -0.18
SHKBP1-225ENST00000600733 J3QKU1 62 aa13.91□□□□□ -0.18
SHKBP1-225ENST00000600733 SS18L2Q9UHA2 77 aa13.91□□□□□ -0.18
SHKBP1-225ENST00000600733 PRR3P79522 188 aaKnown RBP13.9□□□□□ -0.18
SHKBP1-225ENST00000600733 SDIM1Q6ZPB5 146 aa13.9□□□□□ -0.18
SHKBP1-225ENST00000600733 LINC00643Q86TS7 51 aa13.9□□□□□ -0.18
SHKBP1-225ENST00000600733 NOTCH2Q04721 2471 aa13.9□□□□□ -0.18
SHKBP1-225ENST00000600733 LYRM9A8MSI8 78 aa13.89□□□□□ -0.19
SHKBP1-225ENST00000600733 LY6G6DO95868 133 aa13.89□□□□□ -0.19
SHKBP1-225ENST00000600733 SLPIP03973 132 aa13.89□□□□□ -0.19
SHKBP1-225ENST00000600733 C14orf132Q9NPU4 83 aa13.89□□□□□ -0.19
SHKBP1-225ENST00000600733 OTOGQ6ZRI0 2925 aa13.89□□□□□ -0.19
SHKBP1-225ENST00000600733 HECTD1Q9ULT8 2610 aa13.88□□□□□ -0.19
SHKBP1-225ENST00000600733 FAM236AA0A1B0GUQ0 79 aa13.88□□□□□ -0.19
SHKBP1-225ENST00000600733 FAM236BA0A1B0GV22 79 aa13.88□□□□□ -0.19
SHKBP1-225ENST00000600733 ANGP03950 147 aaKnown RBP13.88□□□□□ -0.19
SHKBP1-225ENST00000600733 KIAA0087Q14695 138 aa13.88□□□□□ -0.19
SHKBP1-225ENST00000600733 CHCHD10Q8WYQ3 142 aaPredicted RBP13.88□□□□□ -0.19
SHKBP1-225ENST00000600733 CD164L2Q6UWJ8 174 aa13.87□□□□□ -0.19
SHKBP1-225ENST00000600733 IGHV4-28A0A0C4DH34 117 aa13.87□□□□□ -0.19
SHKBP1-225ENST00000600733 IMUPQ9GZP8 106 aa13.87□□□□□ -0.19
SHKBP1-225ENST00000600733 C9orf66Q5T8R8 295 aa13.86□□□□□ -0.19
SHKBP1-225ENST00000600733 REG3AQ06141 175 aa13.85□□□□□ -0.19
SHKBP1-225ENST00000600733 C9orf116Q5BN46 136 aaPredicted RBP13.85□□□□□ -0.19
SHKBP1-225ENST00000600733 LINC01561Q8N1V8 128 aa13.85□□□□□ -0.19
SHKBP1-225ENST00000600733 CELA1Q9UNI1 258 aa13.85□□□□□ -0.19
SHKBP1-225ENST00000600733 NANOS2P60321 138 aaKnown RBP13.84□□□□□ -0.19
SHKBP1-225ENST00000600733 DAD1P61803 113 aa13.84□□□□□ -0.19
SHKBP1-225ENST00000600733 NCR3O14931 201 aa13.84□□□□□ -0.19
SHKBP1-225ENST00000600733 CFAP161Q6P656 301 aa13.84□□□□□ -0.19
SHKBP1-225ENST00000600733 OBSCN-AS1Q96MR7 158 aa13.83□□□□□ -0.2
SHKBP1-225ENST00000600733 NSD1Q96L73 2696 aaPredicted RBP13.83□□□□□ -0.2
SHKBP1-225ENST00000600733 KMT2BQ9UMN6 2715 aaPredicted RBP13.82□□□□□ -0.2
SHKBP1-225ENST00000600733 TRRAPQ9Y4A5 3859 aa13.82□□□□□ -0.2
SHKBP1-225ENST00000600733 APOC4P55056 127 aa13.8□□□□□ -0.2
SHKBP1-225ENST00000600733 ATRQ13535 2644 aa13.8□□□□□ -0.2
SHKBP1-225ENST00000600733 INAFM1C9JVW0 142 aa13.8□□□□□ -0.2
SHKBP1-225ENST00000600733 ORMDL1Q9P0S3 153 aa13.8□□□□□ -0.2
SHKBP1-225ENST00000600733 KLK5Q9Y337 293 aaPredicted RBP13.8□□□□□ -0.2
SHKBP1-225ENST00000600733 HTN3P15516 51 aa13.79□□□□□ -0.2
SHKBP1-225ENST00000600733 COX17Q14061 63 aa13.79□□□□□ -0.2
SHKBP1-225ENST00000600733 Q8NDZ9 215 aa13.79□□□□□ -0.2
SHKBP1-225ENST00000600733 CXCL5P42830 114 aa13.79□□□□□ -0.2
SHKBP1-225ENST00000600733 Q8NAQ8 132 aa13.79□□□□□ -0.2
SHKBP1-225ENST00000600733 NDUFC2O95298 119 aa13.77□□□□□ -0.21
SHKBP1-225ENST00000600733 C6orf223Q8N319 242 aa13.76□□□□□ -0.21
SHKBP1-225ENST00000600733 LINC00526Q96FQ7 95 aa13.76□□□□□ -0.21
SHKBP1-225ENST00000600733 HIVEP1P15822 2718 aa13.76□□□□□ -0.21
SHKBP1-225ENST00000600733 C10orf25Q5T742 122 aa13.76□□□□□ -0.21
SHKBP1-225ENST00000600733 LINC00846Q9NV44 126 aa13.76□□□□□ -0.21
SHKBP1-225ENST00000600733 TMEM126AQ9H061 195 aa13.75□□□□□ -0.21
SHKBP1-225ENST00000600733 Q8N814 137 aa13.75□□□□□ -0.21
SHKBP1-225ENST00000600733 UNQ6190/PRO20217Q6UXQ8 127 aa13.74□□□□□ -0.21
SHKBP1-225ENST00000600733 TEP1Q99973 2627 aaKnown RBP13.74□□□□□ -0.21
SHKBP1-225ENST00000600733 MIFP14174 115 aa13.73□□□□□ -0.21
SHKBP1-225ENST00000600733 C3orf56Q8N813 242 aa13.73□□□□□ -0.21
SHKBP1-225ENST00000600733 LINC00167Q96N53 147 aa13.73□□□□□ -0.21
SHKBP1-225ENST00000600733 SPAG11BQ08648 103 aa13.72□□□□□ -0.21
SHKBP1-225ENST00000600733 SPART-AS1P0CW21 52 aa13.71□□□□□ -0.21
SHKBP1-225ENST00000600733 C6orf99Q4VX62 202 aa13.71□□□□□ -0.21
SHKBP1-225ENST00000600733 LELP1Q5T871 98 aa13.71□□□□□ -0.21
SHKBP1-225ENST00000600733 KLK12Q9UKR0 248 aa13.71□□□□□ -0.21
SHKBP1-225ENST00000600733 IGKV3D-7A0A0C4DH55 119 aa13.7□□□□□ -0.22
SHKBP1-225ENST00000600733 A0A1B0GX51 115 aa13.69□□□□□ -0.22
SHKBP1-225ENST00000600733 S100A7L2Q5SY68 101 aa13.69□□□□□ -0.22
SHKBP1-225ENST00000600733 CYSRT1A8MQ03 144 aa13.68□□□□□ -0.22
SHKBP1-225ENST00000600733 IGHV4-30-4P0DP06 118 aa13.67□□□□□ -0.22
SHKBP1-225ENST00000600733 PRR34Q9NV39 138 aa13.66□□□□□ -0.22
SHKBP1-225ENST00000600733 TMEM256-PLSCR3K7ERE1 68 aa13.66□□□□□ -0.22
SHKBP1-225ENST00000600733 CCKP06307 115 aa13.66□□□□□ -0.22
SHKBP1-225ENST00000600733 ENHOQ6UWT2 76 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms