RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 GEMIN7Q9H840 131 aaKnown RBP9.39□□□□□ -0.91
TRIM28-205ENST00000595028 CDKN2A-AS1Q9UH64 79 aa9.39□□□□□ -0.91
TRIM28-205ENST00000595028 TRAPPC1Q9Y5R8 145 aa9.39□□□□□ -0.91
TRIM28-205ENST00000595028 PRSS2P07478 247 aa9.38□□□□□ -0.91
TRIM28-205ENST00000595028 Q8IZM0 81 aa9.38□□□□□ -0.91
TRIM28-205ENST00000595028 C18orf32Q8TCD1 76 aa9.38□□□□□ -0.91
TRIM28-205ENST00000595028 PACRGQ96M98 296 aaPredicted RBP9.38□□□□□ -0.91
TRIM28-205ENST00000595028 TOMM7Q9P0U1 55 aa9.38□□□□□ -0.91
TRIM28-205ENST00000595028 LINC00469Q8N7U9 141 aa9.37□□□□□ -0.91
TRIM28-205ENST00000595028 TNXBP22105 4242 aa9.37□□□□□ -0.91
TRIM28-205ENST00000595028 IGLV5-45A0A087WSX0 123 aa9.36□□□□□ -0.91
TRIM28-205ENST00000595028 TINCRA0A1B0GVN0 87 aa9.36□□□□□ -0.91
TRIM28-205ENST00000595028 SCO1O75880 301 aa9.36□□□□□ -0.91
TRIM28-205ENST00000595028 GAGE2EQ4V326 116 aa9.36□□□□□ -0.91
TRIM28-205ENST00000595028 URB1-AS1Q96HZ7 61 aa9.36□□□□□ -0.91
TRIM28-205ENST00000595028 CST9LQ9H4G1 147 aa9.36□□□□□ -0.91
TRIM28-205ENST00000595028 GAGE2DQ9UEU5 116 aa9.36□□□□□ -0.91
TRIM28-205ENST00000595028 A0A096LNJ9 63 aa9.35□□□□□ -0.91
TRIM28-205ENST00000595028 FAM168BA1KXE4 195 aa9.35□□□□□ -0.91
TRIM28-205ENST00000595028 NDUFC2-KCTD14E9PQ53 114 aa9.35□□□□□ -0.91
TRIM28-205ENST00000595028 CKS1BP61024 79 aa9.35□□□□□ -0.91
TRIM28-205ENST00000595028 PMVKQ15126 192 aa9.35□□□□□ -0.91
TRIM28-205ENST00000595028 PHF5AQ7RTV0 110 aaKnown RBP9.35□□□□□ -0.91
TRIM28-205ENST00000595028 YPEL4Q96NS1 127 aa9.35□□□□□ -0.91
TRIM28-205ENST00000595028 SMIM1B2RUZ4 78 aa9.34□□□□□ -0.91
TRIM28-205ENST00000595028 C6orf226Q5I0X4 101 aa9.34□□□□□ -0.91
TRIM28-205ENST00000595028 HBDP02042 147 aa9.33□□□□□ -0.92
TRIM28-205ENST00000595028 MT1HL1P0DM35 61 aa9.33□□□□□ -0.92
TRIM28-205ENST00000595028 FAM19A5Q7Z5A7 132 aaPredicted RBP9.33□□□□□ -0.92
TRIM28-205ENST00000595028 LINC00614P0C842 121 aa9.32□□□□□ -0.92
TRIM28-205ENST00000595028 CXCL5P42830 114 aa9.32□□□□□ -0.92
TRIM28-205ENST00000595028 PDZD11Q5EBL8 140 aa9.32□□□□□ -0.92
TRIM28-205ENST00000595028 SPINK6Q6UWN8 80 aa9.32□□□□□ -0.92
TRIM28-205ENST00000595028 PSORS1C2Q9UIG4 136 aa9.32□□□□□ -0.92
TRIM28-205ENST00000595028 F8VRH5 84 aa9.31□□□□□ -0.92
TRIM28-205ENST00000595028 PMCHL1Q16048 86 aa9.31□□□□□ -0.92
TRIM28-205ENST00000595028 C9orf129Q5T035 196 aaKnown RBP9.31□□□□□ -0.92
TRIM28-205ENST00000595028 KRTAP7-1Q8IUC3 87 aa9.31□□□□□ -0.92
TRIM28-205ENST00000595028 SPINK8P0C7L1 97 aa9.3□□□□□ -0.92
TRIM28-205ENST00000595028 RAB5BP61020 215 aa9.3□□□□□ -0.92
TRIM28-205ENST00000595028 SRSF9Q13242 221 aaKnown RBP eCLIP9.3□□□□□ -0.92
TRIM28-205ENST00000595028 COX7B2Q8TF08 81 aa9.3□□□□□ -0.92
TRIM28-205ENST00000595028 M0QXV9 152 aa9.29□□□□□ -0.92
TRIM28-205ENST00000595028 IGLC3P0DOY3 106 aa9.29□□□□□ -0.92
TRIM28-205ENST00000595028 H3BRM9 83 aa9.28□□□□□ -0.92
TRIM28-205ENST00000595028 NDUFA6P56556 154 aa9.28□□□□□ -0.92
TRIM28-205ENST00000595028 C1orf137Q5JT78 98 aa9.28□□□□□ -0.92
TRIM28-205ENST00000595028 COLCA2A8K830 154 aa9.27□□□□□ -0.93
TRIM28-205ENST00000595028 ATP5LO75964 103 aa9.27□□□□□ -0.93
TRIM28-205ENST00000595028 REG3GQ6UW15 175 aa9.27□□□□□ -0.93
TRIM28-205ENST00000595028 KRTAP11-1Q8IUC1 163 aa9.27□□□□□ -0.93
TRIM28-205ENST00000595028 LINC01600Q96MT4 127 aa9.27□□□□□ -0.93
TRIM28-205ENST00000595028 ZNF22P17026 224 aaPredicted RBP9.26□□□□□ -0.93
TRIM28-205ENST00000595028 XAGE1AQ9HD64 81 aa9.26□□□□□ -0.93
TRIM28-205ENST00000595028 IGLV5-39A0A0G2JS06 123 aa9.25□□□□□ -0.93
TRIM28-205ENST00000595028 UBE2BP63146 152 aa9.25□□□□□ -0.93
TRIM28-205ENST00000595028 CHCHD1Q96BP2 118 aaKnown RBP9.25□□□□□ -0.93
TRIM28-205ENST00000595028 C11orf86A6NJI1 115 aa9.23□□□□□ -0.93
TRIM28-205ENST00000595028 TRGC2P03986 189 aa9.23□□□□□ -0.93
TRIM28-205ENST00000595028 IGLV7-43P04211 117 aa9.23□□□□□ -0.93
TRIM28-205ENST00000595028 BAGE3Q86Y29 109 aa9.23□□□□□ -0.93
TRIM28-205ENST00000595028 ODF1Q14990 250 aa9.21□□□□□ -0.94
TRIM28-205ENST00000595028 C22orf24Q9Y442 160 aa9.21□□□□□ -0.94
TRIM28-205ENST00000595028 CHTOPQ9Y3Y2 248 aaKnown RBP9.2□□□□□ -0.94
TRIM28-205ENST00000595028 HSBP1O75506 76 aa9.19□□□□□ -0.94
TRIM28-205ENST00000595028 TMEM170BQ5T4T1 132 aa9.19□□□□□ -0.94
TRIM28-205ENST00000595028 DIRC1Q969H9 104 aa9.19□□□□□ -0.94
TRIM28-205ENST00000595028 TP73-AS1Q9UF72 201 aa9.19□□□□□ -0.94
TRIM28-205ENST00000595028 TRAV12-1A0A0B4J245 112 aa9.18□□□□□ -0.94
TRIM28-205ENST00000595028 LBHQ53QV2 105 aaPredicted RBP9.18□□□□□ -0.94
TRIM28-205ENST00000595028 MRPL55Q7Z7F7 128 aaKnown RBP9.18□□□□□ -0.94
TRIM28-205ENST00000595028 IFI27L1Q96BM0 104 aa9.18□□□□□ -0.94
TRIM28-205ENST00000595028 H0Y9J4 135 aa9.17□□□□□ -0.94
TRIM28-205ENST00000595028 KRTAP10-8P60410 259 aa9.17□□□□□ -0.94
TRIM28-205ENST00000595028 KRTAP9-2Q9BYQ4 174 aa9.17□□□□□ -0.94
TRIM28-205ENST00000595028 FAM19A2Q8N3H0 131 aa9.16□□□□□ -0.94
TRIM28-205ENST00000595028 IGLV5-37A0A075B6J1 123 aa9.15□□□□□ -0.94
TRIM28-205ENST00000595028 NUPR1O60356 82 aa9.15□□□□□ -0.94
TRIM28-205ENST00000595028 PFN2P35080 140 aa9.15□□□□□ -0.94
TRIM28-205ENST00000595028 LINC00310P59036 64 aa9.15□□□□□ -0.94
TRIM28-205ENST00000595028 SFTA2Q6UW10 78 aa9.15□□□□□ -0.94
TRIM28-205ENST00000595028 ERG28Q9UKR5 140 aa9.15□□□□□ -0.94
TRIM28-205ENST00000595028 SERF1AO75920 110 aa9.14□□□□□ -0.95
TRIM28-205ENST00000595028 TMEM223A0PJW6 202 aa9.13□□□□□ -0.95
TRIM28-205ENST00000595028 COX17Q14061 63 aa9.13□□□□□ -0.95
TRIM28-205ENST00000595028 NKAPP1Q8N9T2 125 aa9.13□□□□□ -0.95
TRIM28-205ENST00000595028 ZNF625Q96I27 306 aaPredicted RBP9.13□□□□□ -0.95
TRIM28-205ENST00000595028 LINC00167Q96N53 147 aa9.12□□□□□ -0.95
TRIM28-205ENST00000595028 GAGE10A6NGK3 116 aa9.11□□□□□ -0.95
TRIM28-205ENST00000595028 ZNF861PO60384 105 aa9.11□□□□□ -0.95
TRIM28-205ENST00000595028 HIST1H2BKO60814 126 aa9.11□□□□□ -0.95
TRIM28-205ENST00000595028 LEPROTL1O95214 131 aa9.11□□□□□ -0.95
TRIM28-205ENST00000595028 HIST1H2BJP06899 126 aa9.11□□□□□ -0.95
TRIM28-205ENST00000595028 KRTAP1-4P0C5Y4 121 aa9.11□□□□□ -0.95
TRIM28-205ENST00000595028 HIST1H2BOP23527 126 aa9.11□□□□□ -0.95
TRIM28-205ENST00000595028 HIST1H2BBP33778 126 aa9.11□□□□□ -0.95
TRIM28-205ENST00000595028 HIST1H2BDP58876 126 aa9.11□□□□□ -0.95
TRIM28-205ENST00000595028 HIST1H2BCP62807 126 aa9.11□□□□□ -0.95
TRIM28-205ENST00000595028 HIST2H2BEQ16778 126 aa9.11□□□□□ -0.95
TRIM28-205ENST00000595028 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 409.4 ms