RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 WFDC10AQ9H1F0 79 aa10.36□□□□□ -0.75
SMARCA4-219ENST00000592604 C14orf132Q9NPU4 83 aa10.36□□□□□ -0.75
SMARCA4-219ENST00000592604 NAV2Q8IVL1 2488 aa10.36□□□□□ -0.75
SMARCA4-219ENST00000592604 LINC00959A0A1B0GUT2 108 aa10.35□□□□□ -0.75
SMARCA4-219ENST00000592604 LECT2O14960 151 aa10.35□□□□□ -0.75
SMARCA4-219ENST00000592604 COX7CP15954 63 aa10.35□□□□□ -0.75
SMARCA4-219ENST00000592604 CENPEQ02224 2701 aa10.35□□□□□ -0.75
SMARCA4-219ENST00000592604 PAX4O43316 350 aa10.35□□□□□ -0.75
SMARCA4-219ENST00000592604 CRYGAP11844 174 aa10.35□□□□□ -0.75
SMARCA4-219ENST00000592604 PLA2G2AP14555 144 aa10.35□□□□□ -0.75
SMARCA4-219ENST00000592604 KRTAP1-3Q8IUG1 177 aa10.35□□□□□ -0.75
SMARCA4-219ENST00000592604 CACNA1AO00555 2505 aa10.34□□□□□ -0.75
SMARCA4-219ENST00000592604 IGLV1-51P01701 117 aa10.34□□□□□ -0.75
SMARCA4-219ENST00000592604 EPG5Q9HCE0 2579 aa10.33□□□□□ -0.76
SMARCA4-219ENST00000592604 TLN2Q9Y4G6 2542 aa10.33□□□□□ -0.76
SMARCA4-219ENST00000592604 Q6JHZ5 121 aa10.33□□□□□ -0.76
SMARCA4-219ENST00000592604 TMEM258P61165 79 aa10.33□□□□□ -0.76
SMARCA4-219ENST00000592604 C6orf226Q5I0X4 101 aa10.33□□□□□ -0.76
SMARCA4-219ENST00000592604 ESM1Q9NQ30 184 aa10.33□□□□□ -0.76
SMARCA4-219ENST00000592604 ATOX1O00244 68 aa10.32□□□□□ -0.76
SMARCA4-219ENST00000592604 LINC00846Q9NV44 126 aa10.32□□□□□ -0.76
SMARCA4-219ENST00000592604 LRRK2Q5S007 2527 aa10.31□□□□□ -0.76
SMARCA4-219ENST00000592604 JMJD1CQ15652 2540 aa10.31□□□□□ -0.76
SMARCA4-219ENST00000592604 SETXQ7Z333 2677 aaKnown RBP10.31□□□□□ -0.76
SMARCA4-219ENST00000592604 Q8IZM0 81 aa10.3□□□□□ -0.76
SMARCA4-219ENST00000592604 ABCA12Q86UK0 2595 aa10.3□□□□□ -0.76
SMARCA4-219ENST00000592604 A0A1B0GUV1 79 aa10.3□□□□□ -0.76
SMARCA4-219ENST00000592604 LINC01561Q8N1V8 128 aa10.3□□□□□ -0.76
SMARCA4-219ENST00000592604 WFDC11Q8NEX6 87 aa10.3□□□□□ -0.76
SMARCA4-219ENST00000592604 LINC00167Q96N53 147 aa10.3□□□□□ -0.76
SMARCA4-219ENST00000592604 ORMDL1Q9P0S3 153 aa10.3□□□□□ -0.76
SMARCA4-219ENST00000592604 NCR3O14931 201 aa10.3□□□□□ -0.76
SMARCA4-219ENST00000592604 RETNQ9HD89 108 aa10.3□□□□□ -0.76
SMARCA4-219ENST00000592604 SS18Q15532 418 aa10.29□□□□□ -0.76
SMARCA4-219ENST00000592604 NBPF19A0A087WUL8 3843 aa10.29□□□□□ -0.76
SMARCA4-219ENST00000592604 ZNF469Q96JG9 3925 aaPredicted RBP10.29□□□□□ -0.76
SMARCA4-219ENST00000592604 SLPIP03973 132 aa10.29□□□□□ -0.76
SMARCA4-219ENST00000592604 PRB1P04280 392 aa10.29□□□□□ -0.76
SMARCA4-219ENST00000592604 RPL18AQ02543 176 aaKnown RBP10.28□□□□□ -0.76
SMARCA4-219ENST00000592604 LINC00612Q8N6U2 182 aa10.28□□□□□ -0.76
SMARCA4-219ENST00000592604 LINC01006Q8NI28 216 aa10.28□□□□□ -0.76
SMARCA4-219ENST00000592604 SONP18583 2426 aaKnown RBP10.28□□□□□ -0.76
SMARCA4-219ENST00000592604 C16orf95Q9H693 158 aa10.27□□□□□ -0.76
SMARCA4-219ENST00000592604 IGKV3D-7A0A0C4DH55 119 aa10.27□□□□□ -0.77
SMARCA4-219ENST00000592604 XCL1P47992 114 aa10.27□□□□□ -0.77
SMARCA4-219ENST00000592604 NF1P21359 2839 aa10.27□□□□□ -0.77
SMARCA4-219ENST00000592604 NANOS2P60321 138 aaKnown RBP10.27□□□□□ -0.77
SMARCA4-219ENST00000592604 C11orf68Q9H3H3 251 aaKnown RBP10.27□□□□□ -0.77
SMARCA4-219ENST00000592604 CCKP06307 115 aa10.26□□□□□ -0.77
SMARCA4-219ENST00000592604 ZNF462Q96JM2 2506 aa10.26□□□□□ -0.77
SMARCA4-219ENST00000592604 NDUFC2O95298 119 aa10.25□□□□□ -0.77
SMARCA4-219ENST00000592604 GYPEP15421 78 aa10.25□□□□□ -0.77
SMARCA4-219ENST00000592604 DEFB130BP0DP73 79 aa10.25□□□□□ -0.77
SMARCA4-219ENST00000592604 DEFB130AP0DP74 79 aa10.25□□□□□ -0.77
SMARCA4-219ENST00000592604 UBR5O95071 2799 aaPredicted RBP10.24□□□□□ -0.77
SMARCA4-219ENST00000592604 JMJD7-PLA2G4BH0Y9G9 81 aa10.24□□□□□ -0.77
SMARCA4-219ENST00000592604 Q8N814 137 aa10.24□□□□□ -0.77
SMARCA4-219ENST00000592604 COX17Q14061 63 aa10.23□□□□□ -0.77
SMARCA4-219ENST00000592604 KIAA0087Q14695 138 aa10.23□□□□□ -0.77
SMARCA4-219ENST00000592604 ITPR3Q14573 2671 aa10.23□□□□□ -0.77
SMARCA4-219ENST00000592604 NIPBLQ6KC79 2804 aaeCLIP10.23□□□□□ -0.776e-6■□□□□ 9.3
SMARCA4-219ENST00000592604 RNASE1P07998 156 aaKnown RBP10.22□□□□□ -0.77
SMARCA4-219ENST00000592604 BRK1Q8WUW1 75 aa10.22□□□□□ -0.77
SMARCA4-219ENST00000592604 BBC3Q96PG8 261 aaPredicted RBP10.22□□□□□ -0.77
SMARCA4-219ENST00000592604 ZNF561-AS1K7EIQ3 104 aa10.22□□□□□ -0.77
SMARCA4-219ENST00000592604 TMEM256-PLSCR3K7ERE1 68 aa10.22□□□□□ -0.77
SMARCA4-219ENST00000592604 SERP2Q8N6R1 65 aa10.22□□□□□ -0.77
SMARCA4-219ENST00000592604 CUBNO60494 3623 aa10.21□□□□□ -0.77
SMARCA4-219ENST00000592604 LINC00482Q8N8I6 264 aa10.21□□□□□ -0.77
SMARCA4-219ENST00000592604 A0A087WVE0 104 aa10.21□□□□□ -0.78
SMARCA4-219ENST00000592604 PRR3P79522 188 aaKnown RBP10.21□□□□□ -0.78
SMARCA4-219ENST00000592604 S100A7L2Q5SY68 101 aa10.21□□□□□ -0.78
SMARCA4-219ENST00000592604 PRO0255Q9UI72 69 aa10.21□□□□□ -0.78
SMARCA4-219ENST00000592604 APCP25054 2843 aa10.2□□□□□ -0.78
SMARCA4-219ENST00000592604 IGHV4-28A0A0C4DH34 117 aa10.2□□□□□ -0.78
SMARCA4-219ENST00000592604 CLPSL2Q6UWE3 100 aa10.2□□□□□ -0.78
SMARCA4-219ENST00000592604 CD164L2Q6UWJ8 174 aa10.2□□□□□ -0.78
SMARCA4-219ENST00000592604 USP17L23D6RBM5 183 aa10.2□□□□□ -0.78
SMARCA4-219ENST00000592604 FAM19A1Q7Z5A9 133 aa10.19□□□□□ -0.78
SMARCA4-219ENST00000592604 ZNF843Q8N446 348 aa10.19□□□□□ -0.78
SMARCA4-219ENST00000592604 UPK3BQ9BT76 320 aa10.19□□□□□ -0.78
SMARCA4-219ENST00000592604 SETD2Q9BYW2 2564 aaPredicted RBP10.19□□□□□ -0.78
SMARCA4-219ENST00000592604 ZFYVE26Q68DK2 2539 aa10.18□□□□□ -0.78
SMARCA4-219ENST00000592604 LYPD5Q6UWN5 251 aa10.18□□□□□ -0.78
SMARCA4-219ENST00000592604 X6R8D5 127 aa10.18□□□□□ -0.78
SMARCA4-219ENST00000592604 ATP5EP2Q5VTU8 51 aa10.18□□□□□ -0.78
SMARCA4-219ENST00000592604 LINC00269Q8N2A0 174 aa10.17□□□□□ -0.78
SMARCA4-219ENST00000592604 CHCHD10Q8WYQ3 142 aaPredicted RBP10.16□□□□□ -0.78
SMARCA4-219ENST00000592604 A0A096LPF7 62 aa10.16□□□□□ -0.78
SMARCA4-219ENST00000592604 KRTAP1-1Q07627 177 aa10.16□□□□□ -0.78
SMARCA4-219ENST00000592604 FN1P02751 2386 aaKnown RBP10.15□□□□□ -0.79
SMARCA4-219ENST00000592604 CCDC168Q8NDH2 2452 aa10.14□□□□□ -0.79
SMARCA4-219ENST00000592604 C6orf99Q4VX62 202 aa10.14□□□□□ -0.79
SMARCA4-219ENST00000592604 FLNAP21333 2647 aaKnown RBP10.14□□□□□ -0.79
SMARCA4-219ENST00000592604 USP24Q9UPU5 2620 aa10.14□□□□□ -0.79
SMARCA4-219ENST00000592604 C9orf116Q5BN46 136 aaPredicted RBP10.13□□□□□ -0.79
SMARCA4-219ENST00000592604 LINC00575Q6W349 94 aa10.13□□□□□ -0.79
SMARCA4-219ENST00000592604 Q8NDZ9 215 aa10.13□□□□□ -0.79
SMARCA4-219ENST00000592604 TRBV10-3A0A0K0K1G6 114 aa10.13□□□□□ -0.79
SMARCA4-219ENST00000592604 REG3AQ06141 175 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms