RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 LSM3P62310 102 aaKnown RBP3□□□□□ -1.93
VPS53-219ENST00000576019 TEN1Q86WV5 123 aa3□□□□□ -1.93
VPS53-219ENST00000576019 RAB37Q96AX2 223 aa3□□□□□ -1.93
VPS53-219ENST00000576019 TVP23CQ96ET8 276 aa3□□□□□ -1.93
VPS53-219ENST00000576019 METTL1Q9UBP6 276 aaKnown RBP3□□□□□ -1.93
VPS53-219ENST00000576019 DNAJC15Q9Y5T4 150 aa3□□□□□ -1.93
VPS53-219ENST00000576019 A0A087WTM6 91 aa2.99□□□□□ -1.93
VPS53-219ENST00000576019 CD14P08571 375 aa2.99□□□□□ -1.93
VPS53-219ENST00000576019 IFI6P09912 130 aa2.99□□□□□ -1.93
VPS53-219ENST00000576019 ZNF93P35789 620 aaPredicted RBP2.99□□□□□ -1.93
VPS53-219ENST00000576019 PCBD1P61457 104 aa2.99□□□□□ -1.93
VPS53-219ENST00000576019 CLLU1Q5K131 121 aa2.99□□□□□ -1.93
VPS53-219ENST00000576019 COL5A1-AS1Q5SY13 56 aa2.99□□□□□ -1.93
VPS53-219ENST00000576019 ZCCHC23Q6ZST2 131 aa2.99□□□□□ -1.93
VPS53-219ENST00000576019 LINC00311Q8N616 119 aa2.99□□□□□ -1.93
VPS53-219ENST00000576019 LINC00304Q8N9R0 145 aa2.99□□□□□ -1.93
VPS53-219ENST00000576019 OR5D14Q8NGL3 314 aa2.99□□□□□ -1.93
VPS53-219ENST00000576019 ZNF563Q8TA94 476 aa2.99□□□□□ -1.93
VPS53-219ENST00000576019 WFDC6Q9BQY6 131 aa2.99□□□□□ -1.93
VPS53-219ENST00000576019 APOC4-APOC2K7ER74 178 aa2.98□□□□□ -1.93
VPS53-219ENST00000576019 CDC42EP2O14613 210 aa2.98□□□□□ -1.93
VPS53-219ENST00000576019 APOC2P02655 101 aa2.98□□□□□ -1.93
VPS53-219ENST00000576019 RNASE2P10153 161 aaKnown RBP2.98□□□□□ -1.93
VPS53-219ENST00000576019 GUCA1AP43080 201 aaPredicted RBP2.98□□□□□ -1.93
VPS53-219ENST00000576019 HSD52Q0P140 79 aa2.98□□□□□ -1.93
VPS53-219ENST00000576019 TPRXLQ17RH7 258 aa2.98□□□□□ -1.93
VPS53-219ENST00000576019 MEIG1Q5JSS6 88 aa2.98□□□□□ -1.93
VPS53-219ENST00000576019 OR10AC1Q8NH08 325 aa2.98□□□□□ -1.93
VPS53-219ENST00000576019 LINC01600Q96MT4 127 aa2.98□□□□□ -1.93
VPS53-219ENST00000576019 SCP2D1Q9UJQ7 156 aa2.98□□□□□ -1.93
VPS53-219ENST00000576019 IER3IP1Q9Y5U9 82 aa2.98□□□□□ -1.93
VPS53-219ENST00000576019 LOC107986453A0A1B0GWG9 222 aa2.97□□□□□ -1.93
VPS53-219ENST00000576019 CCDC179H3BU77 68 aa2.97□□□□□ -1.93
VPS53-219ENST00000576019 MPC2O95563 127 aa2.97□□□□□ -1.93
VPS53-219ENST00000576019 SAA1P0DJI8 122 aaPredicted RBP2.97□□□□□ -1.93
VPS53-219ENST00000576019 HIST1H1DP16402 221 aaKnown RBP2.97□□□□□ -1.93
VPS53-219ENST00000576019 RPL37AP61513 92 aaKnown RBP2.97□□□□□ -1.93
VPS53-219ENST00000576019 OR2T2Q6IF00 324 aa2.97□□□□□ -1.93
VPS53-219ENST00000576019 IZUMO2Q6UXV1 221 aa2.97□□□□□ -1.93
VPS53-219ENST00000576019 COMMD6Q7Z4G1 85 aa2.97□□□□□ -1.93
VPS53-219ENST00000576019 CLECL1Q8IZS7 167 aa2.97□□□□□ -1.93
VPS53-219ENST00000576019 CST11Q9H112 138 aa2.97□□□□□ -1.93
VPS53-219ENST00000576019 CCDC167Q9P0B6 97 aa2.97□□□□□ -1.93
VPS53-219ENST00000576019 MPC1Q9Y5U8 109 aa2.97□□□□□ -1.93
VPS53-219ENST00000576019 LOC107984156A0A0G2JMH3 177 aa2.96□□□□□ -1.94
VPS53-219ENST00000576019 IQCF6A8MYZ5 107 aa2.96□□□□□ -1.94
VPS53-219ENST00000576019 SNAPC5O75971 98 aa2.96□□□□□ -1.94
VPS53-219ENST00000576019 TRACP01848 142 aa2.96□□□□□ -1.94
VPS53-219ENST00000576019 CD3DP04234 171 aa2.96□□□□□ -1.94
VPS53-219ENST00000576019 CCL3L1P16619 93 aa2.96□□□□□ -1.94
VPS53-219ENST00000576019 KRTAP10-8P60410 259 aa2.96□□□□□ -1.94
VPS53-219ENST00000576019 CIRBPQ14011 172 aaKnown RBP2.96□□□□□ -1.94
VPS53-219ENST00000576019 LCE3EQ5T5B0 92 aa2.96□□□□□ -1.94
VPS53-219ENST00000576019 GTF2H5Q6ZYL4 71 aa2.96□□□□□ -1.94
VPS53-219ENST00000576019 ARL17AQ8IVW1 177 aa2.96□□□□□ -1.94
VPS53-219ENST00000576019 TMEM254Q8TBM7 123 aa2.96□□□□□ -1.94
VPS53-219ENST00000576019 DPH3Q96FX2 82 aa2.96□□□□□ -1.94
VPS53-219ENST00000576019 GAFA1Q96PS6 74 aa2.96□□□□□ -1.94
VPS53-219ENST00000576019 RERGLQ9H628 205 aa2.96□□□□□ -1.94
VPS53-219ENST00000576019 LSM2Q9Y333 95 aaKnown RBP2.96□□□□□ -1.94
VPS53-219ENST00000576019 BBIP1A8MTZ0 92 aa2.95□□□□□ -1.94
VPS53-219ENST00000576019 CKS2P33552 79 aa2.95□□□□□ -1.94
VPS53-219ENST00000576019 OR5AK2Q8NH90 309 aa2.95□□□□□ -1.94
VPS53-219ENST00000576019 RPRMQ9NS64 109 aa2.95□□□□□ -1.94
VPS53-219ENST00000576019 V9GYS6 101 aa2.95□□□□□ -1.94
VPS53-219ENST00000576019 E7EUB6 86 aa2.94□□□□□ -1.94
VPS53-219ENST00000576019 RBP4P02753 201 aa2.94□□□□□ -1.94
VPS53-219ENST00000576019 CD2P06729 351 aa2.94□□□□□ -1.94
VPS53-219ENST00000576019 DEFB114Q30KQ6 69 aa2.94□□□□□ -1.94
VPS53-219ENST00000576019 FOXI2Q6ZQN5 318 aa2.94□□□□□ -1.94
VPS53-219ENST00000576019 C5orf17Q8NAS9 161 aa2.94□□□□□ -1.94
VPS53-219ENST00000576019 OTOSQ8NHW6 89 aa2.94□□□□□ -1.94
VPS53-219ENST00000576019 SPANXDQ9BXN6 97 aa2.94□□□□□ -1.94
VPS53-219ENST00000576019 SLC35B3Q9H1N7 401 aa2.94□□□□□ -1.94
VPS53-219ENST00000576019 TAS2R8Q9NYW2 309 aa2.94□□□□□ -1.94
VPS53-219ENST00000576019 MDN1Q9NU22 5596 aa2.93□□□□□ -1.94
VPS53-219ENST00000576019 TRAV12-1A0A0B4J245 112 aa2.93□□□□□ -1.94
VPS53-219ENST00000576019 C2orf70A6NJV1 201 aa2.93□□□□□ -1.94
VPS53-219ENST00000576019 TFF1P04155 84 aa2.93□□□□□ -1.94
VPS53-219ENST00000576019 P0C880 135 aa2.93□□□□□ -1.94
VPS53-219ENST00000576019 TPPP2P59282 170 aa2.93□□□□□ -1.94
VPS53-219ENST00000576019 SPACA4Q8TDM5 124 aa2.93□□□□□ -1.94
VPS53-219ENST00000576019 C3orf85A0A1B0GTC6 90 aa2.92□□□□□ -1.94
VPS53-219ENST00000576019 H3BQF6 201 aa2.92□□□□□ -1.94
VPS53-219ENST00000576019 KRTAP10-5P60370 271 aa2.92□□□□□ -1.94
VPS53-219ENST00000576019 S100A10P60903 97 aa2.92□□□□□ -1.94
VPS53-219ENST00000576019 CATR1Q13166 79 aa2.92□□□□□ -1.94
VPS53-219ENST00000576019 ARPINQ7Z6K5 226 aa2.92□□□□□ -1.94
VPS53-219ENST00000576019 FAM19A2Q8N3H0 131 aa2.92□□□□□ -1.94
VPS53-219ENST00000576019 CIB3Q96Q77 187 aaPredicted RBP2.92□□□□□ -1.94
VPS53-219ENST00000576019 TRBV20-1A0A075B6N2 111 aa2.91□□□□□ -1.94
VPS53-219ENST00000576019 TRGV4A0A0C4DH28 118 aa2.91□□□□□ -1.94
VPS53-219ENST00000576019 G3V318 75 aa2.91□□□□□ -1.94
VPS53-219ENST00000576019 H3BRN7 92 aa2.91□□□□□ -1.94
VPS53-219ENST00000576019 PYYP10082 97 aa2.91□□□□□ -1.94
VPS53-219ENST00000576019 ETV6P41212 452 aa2.91□□□□□ -1.94
VPS53-219ENST00000576019 ELOBQ15370 118 aa2.91□□□□□ -1.94
VPS53-219ENST00000576019 Q1T7F1 81 aa2.91□□□□□ -1.94
VPS53-219ENST00000576019 PYY3Q5JQD4 70 aa2.91□□□□□ -1.94
VPS53-219ENST00000576019 TTC9CQ8N5M4 171 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms