RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 CHCHD7Q9BUK0 85 aa4.72□□□□□ -1.65
NUP88-206ENST00000573169 RETNQ9HD89 108 aa4.72□□□□□ -1.65
NUP88-206ENST00000573169 PEMTQ9UBM1 199 aa4.72□□□□□ -1.65
NUP88-206ENST00000573169 UBE2D4Q9Y2X8 147 aa4.72□□□□□ -1.65
NUP88-206ENST00000573169 STAB2Q8WWQ8 2551 aa4.71□□□□□ -1.65
NUP88-206ENST00000573169 PLECQ15149 4684 aaKnown RBP4.71□□□□□ -1.66
NUP88-206ENST00000573169 A0A1B0GX51 115 aa4.71□□□□□ -1.66
NUP88-206ENST00000573169 KRTAP9-7A8MTY7 169 aa4.71□□□□□ -1.66
NUP88-206ENST00000573169 HIST1H4AP62805 103 aaKnown RBP4.71□□□□□ -1.66
NUP88-206ENST00000573169 RPS28P62857 69 aaKnown RBP4.71□□□□□ -1.66
NUP88-206ENST00000573169 ZNF415Q09FC8 603 aa4.71□□□□□ -1.66
NUP88-206ENST00000573169 LINC00526Q96FQ7 95 aa4.71□□□□□ -1.66
NUP88-206ENST00000573169 SPXQ9BT56 116 aa4.71□□□□□ -1.66
NUP88-206ENST00000573169 CSDC2Q9Y534 153 aaKnown RBP4.71□□□□□ -1.66
NUP88-206ENST00000573169 SORL1Q92673 2214 aa4.7□□□□□ -1.66
NUP88-206ENST00000573169 TRAV8-3A0A0A6YYJ7 113 aa4.7□□□□□ -1.66
NUP88-206ENST00000573169 LCE6AA0A183 80 aa4.7□□□□□ -1.66
NUP88-206ENST00000573169 A8MZ25 164 aa4.7□□□□□ -1.66
NUP88-206ENST00000573169 H7C2G1 150 aa4.7□□□□□ -1.66
NUP88-206ENST00000573169 UQCRQO14949 82 aa4.7□□□□□ -1.66
NUP88-206ENST00000573169 PRSS2P07478 247 aa4.7□□□□□ -1.66
NUP88-206ENST00000573169 SNRPD3P62318 126 aaKnown RBP4.7□□□□□ -1.66
NUP88-206ENST00000573169 HERV-K104P63124 156 aa4.7□□□□□ -1.66
NUP88-206ENST00000573169 CIRBPQ14011 172 aaKnown RBP4.7□□□□□ -1.66
NUP88-206ENST00000573169 C3orf22Q8N5N4 141 aa4.7□□□□□ -1.66
NUP88-206ENST00000573169 WFDC10AQ9H1F0 79 aa4.7□□□□□ -1.66
NUP88-206ENST00000573169 C22orf24Q9Y442 160 aa4.7□□□□□ -1.66
NUP88-206ENST00000573169 IGHV3-53P01767 116 aa4.69□□□□□ -1.66
NUP88-206ENST00000573169 INAFM2P0DMQ5 153 aa4.69□□□□□ -1.66
NUP88-206ENST00000573169 FAM74A4Q5TZK3 123 aa4.69□□□□□ -1.66
NUP88-206ENST00000573169 SMIM20Q8N5G0 67 aa4.69□□□□□ -1.66
NUP88-206ENST00000573169 LINC00308Q8TCZ7 52 aa4.69□□□□□ -1.66
NUP88-206ENST00000573169 CLEC2BQ92478 149 aa4.69□□□□□ -1.66
NUP88-206ENST00000573169 LYSTQ99698 3801 aa4.69□□□□□ -1.66
NUP88-206ENST00000573169 CSMD3Q7Z407 3707 aa4.68□□□□□ -1.66
NUP88-206ENST00000573169 IGHV3-64A0A075B6Q5 118 aa4.68□□□□□ -1.66
NUP88-206ENST00000573169 RBMY1BA6NDE4 496 aaKnown RBP4.68□□□□□ -1.66
NUP88-206ENST00000573169 RBMY1EA6NEQ0 496 aaKnown RBP4.68□□□□□ -1.66
NUP88-206ENST00000573169 RBMY1DP0C7P1 496 aaKnown RBP4.68□□□□□ -1.66
NUP88-206ENST00000573169 CRYGAP11844 174 aa4.68□□□□□ -1.66
NUP88-206ENST00000573169 HERVK_113P63121 156 aa4.68□□□□□ -1.66
NUP88-206ENST00000573169 ZNF625Q96I27 306 aaPredicted RBP4.68□□□□□ -1.66
NUP88-206ENST00000573169 OBSCN-AS1Q96MR7 158 aa4.68□□□□□ -1.66
NUP88-206ENST00000573169 OVOL2Q9BRP0 275 aa4.68□□□□□ -1.66
NUP88-206ENST00000573169 RS1O15537 224 aa4.67□□□□□ -1.66
NUP88-206ENST00000573169 COX7CP15954 63 aa4.67□□□□□ -1.66
NUP88-206ENST00000573169 RPL28P46779 137 aaKnown RBP4.67□□□□□ -1.66
NUP88-206ENST00000573169 DEFB114Q30KQ6 69 aa4.67□□□□□ -1.66
NUP88-206ENST00000573169 SMCR5Q8TEV8 140 aa4.67□□□□□ -1.66
NUP88-206ENST00000573169 DYNLRB2Q8TF09 96 aa4.67□□□□□ -1.66
NUP88-206ENST00000573169 C2orf48Q96LS8 159 aa4.67□□□□□ -1.66
NUP88-206ENST00000573169 CHCHD5Q9BSY4 110 aa4.67□□□□□ -1.66
NUP88-206ENST00000573169 CDKN2A-AS1Q9UH64 79 aa4.67□□□□□ -1.66
NUP88-206ENST00000573169 ALMS1Q8TCU4 4167 aa4.67□□□□□ -1.66
NUP88-206ENST00000573169 TRAV12-2A0A075B6T6 113 aa4.66□□□□□ -1.66
NUP88-206ENST00000573169 IGHV3OR16-12A0A075B7B8 117 aa4.66□□□□□ -1.66
NUP88-206ENST00000573169 FAM236AA0A1B0GUQ0 79 aa4.66□□□□□ -1.66
NUP88-206ENST00000573169 FAM236BA0A1B0GV22 79 aa4.66□□□□□ -1.66
NUP88-206ENST00000573169 RBMY1A1P0DJD3 496 aaKnown RBP4.66□□□□□ -1.66
NUP88-206ENST00000573169 RBMY1CP0DJD4 496 aa4.66□□□□□ -1.66
NUP88-206ENST00000573169 MALP21145 153 aa4.66□□□□□ -1.66
NUP88-206ENST00000573169 RBMY1FQ15415 496 aaKnown RBP4.66□□□□□ -1.66
NUP88-206ENST00000573169 SPINK13Q1W4C9 94 aa4.66□□□□□ -1.66
NUP88-206ENST00000573169 LINC00242Q5T6M2 205 aa4.66□□□□□ -1.66
NUP88-206ENST00000573169 SOSTDC1Q6X4U4 206 aa4.66□□□□□ -1.66
NUP88-206ENST00000573169 C11orf72Q8NBR9 251 aa4.66□□□□□ -1.66
NUP88-206ENST00000573169 TRAV13-2A0A0B4J235 113 aa4.65□□□□□ -1.67
NUP88-206ENST00000573169 TRBV10-1A0A0K0K1A3 114 aa4.65□□□□□ -1.67
NUP88-206ENST00000573169 SMIM1B2RUZ4 78 aa4.65□□□□□ -1.67
NUP88-206ENST00000573169 F5H768 121 aa4.65□□□□□ -1.67
NUP88-206ENST00000573169 ATOX1O00244 68 aa4.65□□□□□ -1.67
NUP88-206ENST00000573169 BAALC-AS2P0C853 105 aa4.65□□□□□ -1.67
NUP88-206ENST00000573169 DAZ2Q13117 558 aaKnown RBP4.65□□□□□ -1.67
NUP88-206ENST00000573169 Q6JHZ5 121 aa4.65□□□□□ -1.67
NUP88-206ENST00000573169 CEMP1Q6PRD7 247 aaPredicted RBP4.65□□□□□ -1.67
NUP88-206ENST00000573169 Q6ZSN1 163 aa4.65□□□□□ -1.67
NUP88-206ENST00000573169 DAZ4Q86SG3 579 aaKnown RBP4.65□□□□□ -1.67
NUP88-206ENST00000573169 IL17DQ8TAD2 202 aa4.65□□□□□ -1.67
NUP88-206ENST00000573169 DEFB104AQ8WTQ1 72 aa4.65□□□□□ -1.67
NUP88-206ENST00000573169 DAZ3Q9NR90 486 aaKnown RBP4.65□□□□□ -1.67
NUP88-206ENST00000573169 IGKV3-7A0A075B6H7 116 aa4.64□□□□□ -1.67
NUP88-206ENST00000573169 H0YGX0 51 aa4.64□□□□□ -1.67
NUP88-206ENST00000573169 C9orf153Q5TBE3 101 aa4.64□□□□□ -1.67
NUP88-206ENST00000573169 Q9H8V8 135 aa4.64□□□□□ -1.67
NUP88-206ENST00000573169 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.63□□□□□ -1.67
NUP88-206ENST00000573169 IGKV2-29A2NJV5 120 aaPredicted RBP4.63□□□□□ -1.67
NUP88-206ENST00000573169 J3KT08 172 aa4.63□□□□□ -1.67
NUP88-206ENST00000573169 COX6A2Q02221 97 aa4.63□□□□□ -1.67
NUP88-206ENST00000573169 C1orf43Q9BWL3 253 aa4.63□□□□□ -1.67
NUP88-206ENST00000573169 FAM30AQ9NZY2 134 aa4.63□□□□□ -1.67
NUP88-206ENST00000573169 RPL18AQ02543 176 aaKnown RBP4.62□□□□□ -1.67
NUP88-206ENST00000573169 FAM218AQ96MZ4 157 aa4.62□□□□□ -1.67
NUP88-206ENST00000573169 LINC00167Q96N53 147 aa4.62□□□□□ -1.67
NUP88-206ENST00000573169 CDC42SE2Q9NRR3 84 aa4.62□□□□□ -1.67
NUP88-206ENST00000573169 Q9UF83 564 aa4.62□□□□□ -1.67
NUP88-206ENST00000573169 IGKV3-20P01619 116 aa4.61□□□□□ -1.67
NUP88-206ENST00000573169 LINC00694P0DN24 101 aa4.61□□□□□ -1.67
NUP88-206ENST00000573169 TMEM258P61165 79 aa4.61□□□□□ -1.67
NUP88-206ENST00000573169 RNASE13Q5GAN3 156 aaKnown RBP4.61□□□□□ -1.67
NUP88-206ENST00000573169 UPK3BQ9BT76 320 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms