RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 IFI27P40305 119 aaPredicted RBP7.12□□□□□ -1.27
CCDC40-208ENST00000572270 Q8N377 158 aa7.12□□□□□ -1.27
CCDC40-208ENST00000572270 HIGD2AQ9BW72 106 aa7.12□□□□□ -1.27
CCDC40-208ENST00000572270 TMEM126AQ9H061 195 aa7.12□□□□□ -1.27
CCDC40-208ENST00000572270 SLC25A20O43772 301 aa7.11□□□□□ -1.27
CCDC40-208ENST00000572270 OCC1Q8TAD7 63 aa7.11□□□□□ -1.27
CCDC40-208ENST00000572270 SPRR4Q96PI1 79 aa7.11□□□□□ -1.27
CCDC40-208ENST00000572270 ZNF706Q9Y5V0 76 aaPredicted RBP7.11□□□□□ -1.27
CCDC40-208ENST00000572270 TEX46H3BTG2 121 aa7.1□□□□□ -1.27
CCDC40-208ENST00000572270 CFC1P0CG37 223 aa7.1□□□□□ -1.27
CCDC40-208ENST00000572270 RPS29P62273 56 aaKnown RBP7.1□□□□□ -1.27
CCDC40-208ENST00000572270 C20orf78Q9BR46 151 aa7.1□□□□□ -1.27
CCDC40-208ENST00000572270 TMEM238C9JI98 176 aa7.09□□□□□ -1.27
CCDC40-208ENST00000572270 KRTAP4-16G5E9R7 235 aaPredicted RBP7.09□□□□□ -1.27
CCDC40-208ENST00000572270 SCO1O75880 301 aa7.09□□□□□ -1.27
CCDC40-208ENST00000572270 CXCL5P42830 114 aa7.09□□□□□ -1.27
CCDC40-208ENST00000572270 TEX43Q6ZNM6 134 aa7.09□□□□□ -1.27
CCDC40-208ENST00000572270 C2orf88Q9BSF0 95 aa7.09□□□□□ -1.27
CCDC40-208ENST00000572270 IGLV4-3A0A075B6K6 122 aa7.08□□□□□ -1.28
CCDC40-208ENST00000572270 HIGD1CA8MV81 97 aa7.08□□□□□ -1.28
CCDC40-208ENST00000572270 CT83Q5H943 113 aa7.08□□□□□ -1.28
CCDC40-208ENST00000572270 TMEM141Q96I45 108 aa7.08□□□□□ -1.28
CCDC40-208ENST00000572270 FAM231DQ6ZW35 169 aa7.07□□□□□ -1.28
CCDC40-208ENST00000572270 MACF1Q9UPN3 7388 aaKnown RBP7.06□□□□□ -1.28
CCDC40-208ENST00000572270 RIGQ13278 110 aa7.06□□□□□ -1.28
CCDC40-208ENST00000572270 KRTAP19-1Q8IUB9 90 aa7.06□□□□□ -1.28
CCDC40-208ENST00000572270 SMIM2Q9BVW6 85 aa7.06□□□□□ -1.28
CCDC40-208ENST00000572270 NDUFA13Q9P0J0 144 aa7.06□□□□□ -1.28
CCDC40-208ENST00000572270 PYGO1Q9Y3Y4 419 aa7.06□□□□□ -1.28
CCDC40-208ENST00000572270 M0R378 163 aa7.05□□□□□ -1.28
CCDC40-208ENST00000572270 MRPL51Q4U2R6 128 aaKnown RBP7.05□□□□□ -1.28
CCDC40-208ENST00000572270 EIF5A2Q9GZV4 153 aaKnown RBP7.05□□□□□ -1.28
CCDC40-208ENST00000572270 GEMIN7Q9H840 131 aaKnown RBP7.05□□□□□ -1.28
CCDC40-208ENST00000572270 TRBV24-1A0A075B6N3 115 aa7.04□□□□□ -1.28
CCDC40-208ENST00000572270 LINC00862A6NCI5 91 aa7.04□□□□□ -1.28
CCDC40-208ENST00000572270 CKS2P33552 79 aa7.03□□□□□ -1.28
CCDC40-208ENST00000572270 LINC01551Q86U37 167 aa7.03□□□□□ -1.28
CCDC40-208ENST00000572270 SYNE2Q8WXH0 6885 aaKnown RBP7.03□□□□□ -1.28
CCDC40-208ENST00000572270 KANTRA0A1W2PQU2 76 aa7.02□□□□□ -1.29
CCDC40-208ENST00000572270 RAB5AP20339 215 aa7.02□□□□□ -1.29
CCDC40-208ENST00000572270 RAB5BP61020 215 aa7.02□□□□□ -1.29
CCDC40-208ENST00000572270 ZNF345Q14585 488 aa7.02□□□□□ -1.29
CCDC40-208ENST00000572270 FAM104BQ5XKR9 115 aa7.02□□□□□ -1.29
CCDC40-208ENST00000572270 MOBPQ13875 183 aa7.01□□□□□ -1.29
CCDC40-208ENST00000572270 C9orf92A6NGG3 77 aa7□□□□□ -1.29
CCDC40-208ENST00000572270 TAGLN2P37802 199 aaKnown RBP7□□□□□ -1.29
CCDC40-208ENST00000572270 HERVK_113P63121 156 aa7□□□□□ -1.29
CCDC40-208ENST00000572270 ZC2HC1BQ5TFG8 222 aa7□□□□□ -1.29
CCDC40-208ENST00000572270 VCX2Q9H322 139 aa7□□□□□ -1.29
CCDC40-208ENST00000572270 IGLV9-49A0A0B4J1Y8 123 aa6.99□□□□□ -1.29
CCDC40-208ENST00000572270 SEC11AP67812 179 aa6.99□□□□□ -1.29
CCDC40-208ENST00000572270 CDKN2A-AS1Q9UH64 79 aa6.99□□□□□ -1.29
CCDC40-208ENST00000572270 VPREB1P12018 145 aa6.98□□□□□ -1.29
CCDC40-208ENST00000572270 RPL24P83731 157 aaKnown RBP6.98□□□□□ -1.29
CCDC40-208ENST00000572270 SSBP3-AS1Q7Z2R9 100 aa6.98□□□□□ -1.29
CCDC40-208ENST00000572270 D6R8Y8 96 aa6.97□□□□□ -1.29
CCDC40-208ENST00000572270 FAM19A3Q7Z5A8 133 aa6.97□□□□□ -1.29
CCDC40-208ENST00000572270 AKAP14Q86UN6 197 aa6.97□□□□□ -1.29
CCDC40-208ENST00000572270 COX7B2Q8TF08 81 aa6.97□□□□□ -1.29
CCDC40-208ENST00000572270 AMELXQ99217 191 aa6.97□□□□□ -1.29
CCDC40-208ENST00000572270 NPYP01303 97 aa6.96□□□□□ -1.3
CCDC40-208ENST00000572270 C2orf66Q6UXQ4 117 aa6.96□□□□□ -1.3
CCDC40-208ENST00000572270 LINC00483Q53H64 154 aa6.95□□□□□ -1.3
CCDC40-208ENST00000572270 LINC00846Q9NV44 126 aa6.95□□□□□ -1.3
CCDC40-208ENST00000572270 SMLR1H3BR10 107 aa6.94□□□□□ -1.3
CCDC40-208ENST00000572270 GAGE2AQ6NT46 116 aa6.94□□□□□ -1.3
CCDC40-208ENST00000572270 NAT8BQ9UHF3 227 aa6.94□□□□□ -1.3
CCDC40-208ENST00000572270 CYSLTR1Q9Y271 337 aa6.94□□□□□ -1.3
CCDC40-208ENST00000572270 SMIM1B2RUZ4 78 aa6.93□□□□□ -1.3
CCDC40-208ENST00000572270 TMEM250H0YL14 139 aa6.93□□□□□ -1.3
CCDC40-208ENST00000572270 PFN2P35080 140 aa6.93□□□□□ -1.3
CCDC40-208ENST00000572270 CEBPGP53567 150 aa6.93□□□□□ -1.3
CCDC40-208ENST00000572270 RAB14P61106 215 aa6.93□□□□□ -1.3
CCDC40-208ENST00000572270 PDZD11Q5EBL8 140 aa6.93□□□□□ -1.3
CCDC40-208ENST00000572270 Q6Q795 121 aa6.93□□□□□ -1.3
CCDC40-208ENST00000572270 SMCR5Q8TEV8 140 aa6.93□□□□□ -1.3
CCDC40-208ENST00000572270 TIMM17AQ99595 171 aa6.93□□□□□ -1.3
CCDC40-208ENST00000572270 KRTAP9-8Q9BYQ0 159 aa6.93□□□□□ -1.3
CCDC40-208ENST00000572270 OSTCQ9NRP0 149 aa6.93□□□□□ -1.3
CCDC40-208ENST00000572270 ATP5LO75964 103 aa6.92□□□□□ -1.3
CCDC40-208ENST00000572270 NPSP0C0P6 89 aa6.92□□□□□ -1.3
CCDC40-208ENST00000572270 A0A1B0GW15 77 aa6.91□□□□□ -1.3
CCDC40-208ENST00000572270 IGLV6-57P01721 117 aa6.91□□□□□ -1.3
CCDC40-208ENST00000572270 PPBPP02775 128 aa6.91□□□□□ -1.3
CCDC40-208ENST00000572270 SND1-IT1Q9HBX3 110 aa6.91□□□□□ -1.3
CCDC40-208ENST00000572270 HMSDA8MTL9 139 aa6.9□□□□□ -1.3
CCDC40-208ENST00000572270 F8W036 122 aa6.9□□□□□ -1.3
CCDC40-208ENST00000572270 PAPPA-AS1Q5QFB9 102 aa6.9□□□□□ -1.3
CCDC40-208ENST00000572270 V9GYV3 84 aa6.9□□□□□ -1.3
CCDC40-208ENST00000572270 LOC389332A0A1B0GUA5 103 aa6.89□□□□□ -1.31
CCDC40-208ENST00000572270 FAM74A3Q4VXF1 159 aa6.89□□□□□ -1.31
CCDC40-208ENST00000572270 S100A8P05109 93 aa6.88□□□□□ -1.31
CCDC40-208ENST00000572270 KRTAP6-3Q3LI67 103 aa6.88□□□□□ -1.31
CCDC40-208ENST00000572270 C9orf153Q5TBE3 101 aa6.88□□□□□ -1.31
CCDC40-208ENST00000572270 ORMDL3Q8N138 153 aa6.88□□□□□ -1.31
CCDC40-208ENST00000572270 SMIM7Q9BQ49 75 aa6.88□□□□□ -1.31
CCDC40-208ENST00000572270 LIMD2Q9BT23 127 aa6.88□□□□□ -1.31
CCDC40-208ENST00000572270 ETDCA0A1B0GVM5 59 aa6.87□□□□□ -1.31
CCDC40-208ENST00000572270 PRYO14603 147 aa6.87□□□□□ -1.31
CCDC40-208ENST00000572270 RPL37P61927 97 aaKnown RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms