RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 LINC01547P58512 204 aaPredicted RBP4.34□□□□□ -1.71
CHD3-213ENST00000571249 MTURNQ8N3F0 131 aa4.34□□□□□ -1.71
CHD3-213ENST00000571249 ATP6V0E2Q8NHE4 81 aa4.34□□□□□ -1.71
CHD3-213ENST00000571249 C2orf88Q9BSF0 95 aa4.34□□□□□ -1.71
CHD3-213ENST00000571249 TRAV8-3A0A0A6YYJ7 113 aa4.33□□□□□ -1.72
CHD3-213ENST00000571249 SDHAF1A6NFY7 115 aa4.33□□□□□ -1.72
CHD3-213ENST00000571249 DLEU1O43261 78 aa4.33□□□□□ -1.72
CHD3-213ENST00000571249 TSHBP01222 138 aa4.33□□□□□ -1.72
CHD3-213ENST00000571249 RHOHQ15669 191 aa4.33□□□□□ -1.72
CHD3-213ENST00000571249 VAMP3Q15836 100 aa4.33□□□□□ -1.72
CHD3-213ENST00000571249 KRTAP19-4Q3LI73 84 aa4.33□□□□□ -1.72
CHD3-213ENST00000571249 CFAP126Q5VTH2 177 aa4.33□□□□□ -1.72
CHD3-213ENST00000571249 ATOH7Q8N100 152 aa4.33□□□□□ -1.72
CHD3-213ENST00000571249 DNAJC30Q96LL9 226 aa4.33□□□□□ -1.72
CHD3-213ENST00000571249 MRPL16Q9NX20 251 aaKnown RBP4.33□□□□□ -1.72
CHD3-213ENST00000571249 A0A087WX48 190 aa4.32□□□□□ -1.72
CHD3-213ENST00000571249 IGIPA6NJ69 53 aa4.32□□□□□ -1.72
CHD3-213ENST00000571249 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.32□□□□□ -1.72
CHD3-213ENST00000571249 M0R143 59 aa4.32□□□□□ -1.72
CHD3-213ENST00000571249 ZNF56Q15929 161 aa4.32□□□□□ -1.72
CHD3-213ENST00000571249 FAM74A4Q5TZK3 123 aa4.32□□□□□ -1.72
CHD3-213ENST00000571249 C2orf66Q6UXQ4 117 aa4.32□□□□□ -1.72
CHD3-213ENST00000571249 LINC01561Q8N1V8 128 aa4.32□□□□□ -1.72
CHD3-213ENST00000571249 Q8N3U1 123 aa4.32□□□□□ -1.72
CHD3-213ENST00000571249 TMEM141Q96I45 108 aa4.32□□□□□ -1.72
CHD3-213ENST00000571249 TIMM17AQ99595 171 aa4.32□□□□□ -1.72
CHD3-213ENST00000571249 KIR2DL4Q99706 377 aa4.32□□□□□ -1.72
CHD3-213ENST00000571249 PMCHL2Q9BQD1 86 aa4.32□□□□□ -1.72
CHD3-213ENST00000571249 COX11Q9Y6N1 276 aa4.32□□□□□ -1.72
CHD3-213ENST00000571249 LOC100131303A0A0U1RQF7 123 aa4.31□□□□□ -1.72
CHD3-213ENST00000571249 I3L3M4 83 aa4.31□□□□□ -1.72
CHD3-213ENST00000571249 DPM2O94777 84 aa4.31□□□□□ -1.72
CHD3-213ENST00000571249 IGKCP01834 107 aa4.31□□□□□ -1.72
CHD3-213ENST00000571249 PRSS1P07477 247 aa4.31□□□□□ -1.72
CHD3-213ENST00000571249 COX8AP10176 69 aa4.31□□□□□ -1.72
CHD3-213ENST00000571249 FGF6P10767 208 aa4.31□□□□□ -1.72
CHD3-213ENST00000571249 SLC25A34Q6PIV7 304 aa4.31□□□□□ -1.72
CHD3-213ENST00000571249 DPH3Q96FX2 82 aa4.31□□□□□ -1.72
CHD3-213ENST00000571249 SCGB3A1Q96QR1 104 aa4.31□□□□□ -1.72
CHD3-213ENST00000571249 SNHG12Q9BXW3 62 aa4.31□□□□□ -1.72
CHD3-213ENST00000571249 CYSLTR1Q9Y271 337 aa4.31□□□□□ -1.72
CHD3-213ENST00000571249 PYGO1Q9Y3Y4 419 aa4.31□□□□□ -1.72
CHD3-213ENST00000571249 IGKV2D-24A0A075B6R9 120 aa4.3□□□□□ -1.72
CHD3-213ENST00000571249 TRAV4A0A0B4J268 109 aa4.3□□□□□ -1.72
CHD3-213ENST00000571249 TRBV10-1A0A0K0K1A3 114 aa4.3□□□□□ -1.72
CHD3-213ENST00000571249 F8VRH5 84 aa4.3□□□□□ -1.72
CHD3-213ENST00000571249 PLNP26678 52 aa4.3□□□□□ -1.72
CHD3-213ENST00000571249 SPINK6Q6UWN8 80 aa4.3□□□□□ -1.72
CHD3-213ENST00000571249 Q6ZN92 141 aa4.3□□□□□ -1.72
CHD3-213ENST00000571249 SH2D6Q7Z4S9 175 aa4.3□□□□□ -1.72
CHD3-213ENST00000571249 BOD1L2Q8IYS8 172 aa4.3□□□□□ -1.72
CHD3-213ENST00000571249 C20orf203Q8NBC4 194 aa4.3□□□□□ -1.72
CHD3-213ENST00000571249 FAM218AQ96MZ4 157 aa4.3□□□□□ -1.72
CHD3-213ENST00000571249 PRR3P79522 188 aaKnown RBP4.29□□□□□ -1.72
CHD3-213ENST00000571249 PMVKQ15126 192 aa4.29□□□□□ -1.72
CHD3-213ENST00000571249 C14orf177Q52M58 125 aa4.29□□□□□ -1.72
CHD3-213ENST00000571249 SDIM1Q6ZPB5 146 aa4.29□□□□□ -1.72
CHD3-213ENST00000571249 DAZ4Q86SG3 579 aaKnown RBP4.29□□□□□ -1.72
CHD3-213ENST00000571249 C7orf33Q8WU49 177 aa4.29□□□□□ -1.72
CHD3-213ENST00000571249 RMI2Q96E14 147 aa4.29□□□□□ -1.72
CHD3-213ENST00000571249 DAZ3Q9NR90 486 aaKnown RBP4.29□□□□□ -1.72
CHD3-213ENST00000571249 MRPL35Q9NZE8 188 aaKnown RBP4.29□□□□□ -1.72
CHD3-213ENST00000571249 A0A087WYN8 130 aa4.28□□□□□ -1.72
CHD3-213ENST00000571249 C2orf91Q6ZV80 131 aa4.28□□□□□ -1.72
CHD3-213ENST00000571249 STPG4Q8N801 248 aa4.28□□□□□ -1.72
CHD3-213ENST00000571249 C9orf163Q8N9P6 203 aa4.28□□□□□ -1.72
CHD3-213ENST00000571249 FAM104AQ969W3 186 aa4.28□□□□□ -1.72
CHD3-213ENST00000571249 TIMM21Q9BVV7 248 aa4.28□□□□□ -1.72
CHD3-213ENST00000571249 PPDPFQ9H3Y8 114 aa4.28□□□□□ -1.72
CHD3-213ENST00000571249 CST9LQ9H4G1 147 aa4.28□□□□□ -1.72
CHD3-213ENST00000571249 HIGD1BQ9P298 99 aa4.28□□□□□ -1.72
CHD3-213ENST00000571249 NEBP20929 6669 aa4.28□□□□□ -1.72
CHD3-213ENST00000571249 IGLV4-69A0A075B6H9 119 aa4.27□□□□□ -1.73
CHD3-213ENST00000571249 TRBV6-4A0A1B0GX49 114 aa4.27□□□□□ -1.73
CHD3-213ENST00000571249 RPL39P62891 51 aaKnown RBP4.27□□□□□ -1.73
CHD3-213ENST00000571249 CIRBPQ14011 172 aaKnown RBP4.27□□□□□ -1.73
CHD3-213ENST00000571249 ZC2HC1BQ5TFG8 222 aa4.27□□□□□ -1.73
CHD3-213ENST00000571249 AMELXQ99217 191 aa4.27□□□□□ -1.73
CHD3-213ENST00000571249 CHCHD7Q9BUK0 85 aa4.27□□□□□ -1.73
CHD3-213ENST00000571249 SPANXA1Q9NS26 97 aa4.27□□□□□ -1.73
CHD3-213ENST00000571249 IGLV4-3A0A075B6K6 122 aa4.26□□□□□ -1.73
CHD3-213ENST00000571249 TRBV7-3A0A075B6L6 115 aa4.26□□□□□ -1.73
CHD3-213ENST00000571249 IGKV2D-26A0A0A0MRZ7 120 aa4.26□□□□□ -1.73
CHD3-213ENST00000571249 IGHV3-73A0A0B4J1V6 119 aa4.26□□□□□ -1.73
CHD3-213ENST00000571249 C11orf86A6NJI1 115 aa4.26□□□□□ -1.73
CHD3-213ENST00000571249 E9PLD3 99 aa4.26□□□□□ -1.73
CHD3-213ENST00000571249 TSPAN13O95857 204 aa4.26□□□□□ -1.73
CHD3-213ENST00000571249 LINC00694P0DN24 101 aa4.26□□□□□ -1.73
CHD3-213ENST00000571249 UBE2D3P61077 147 aa4.26□□□□□ -1.73
CHD3-213ENST00000571249 UBE2D2P62837 147 aa4.26□□□□□ -1.73
CHD3-213ENST00000571249 MRPS36P82909 103 aaKnown RBP4.26□□□□□ -1.73
CHD3-213ENST00000571249 COL5A1-AS1Q5SY13 56 aa4.26□□□□□ -1.73
CHD3-213ENST00000571249 GTSF1LQ9H1H1 148 aa4.26□□□□□ -1.73
CHD3-213ENST00000571249 Q9UF83 564 aa4.26□□□□□ -1.73
CHD3-213ENST00000571249 CHTF8P0CG12 524 aa4.25□□□□□ -1.73
CHD3-213ENST00000571249 RPL36AP83881 106 aaKnown RBP4.25□□□□□ -1.73
CHD3-213ENST00000571249 BVES-AS1Q5T3Y7 98 aa4.25□□□□□ -1.73
CHD3-213ENST00000571249 PCP2Q8IVA1 136 aa4.25□□□□□ -1.73
CHD3-213ENST00000571249 SLC25A29Q8N8R3 303 aa4.25□□□□□ -1.73
CHD3-213ENST00000571249 RPL36ALQ969Q0 106 aaKnown RBP4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms