RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 TRAV25A0A0B4J276 109 aa10.19□□□□□ -0.78
VPS35-210ENST00000568784 A8MTW9 85 aa10.19□□□□□ -0.78
VPS35-210ENST00000568784 C9orf116Q5BN46 136 aaPredicted RBP10.19□□□□□ -0.78
VPS35-210ENST00000568784 DEFB121Q5J5C9 76 aa10.19□□□□□ -0.78
VPS35-210ENST00000568784 LRRC75A-AS1Q8N1F1 130 aa10.19□□□□□ -0.78
VPS35-210ENST00000568784 LINC00846Q9NV44 126 aa10.19□□□□□ -0.78
VPS35-210ENST00000568784 LOC107984640A0A0U1RRK4 108 aa10.18□□□□□ -0.78
VPS35-210ENST00000568784 UQCRQO14949 82 aa10.18□□□□□ -0.78
VPS35-210ENST00000568784 LINC00959A0A1B0GUT2 108 aa10.18□□□□□ -0.78
VPS35-210ENST00000568784 LAMTOR3Q9UHA4 124 aa10.18□□□□□ -0.78
VPS35-210ENST00000568784 TRBV6-4A0A1B0GX49 114 aa10.17□□□□□ -0.78
VPS35-210ENST00000568784 CXCL5P42830 114 aa10.17□□□□□ -0.78
VPS35-210ENST00000568784 IMUPQ9GZP8 106 aa10.17□□□□□ -0.78
VPS35-210ENST00000568784 TMEM126AQ9H061 195 aa10.17□□□□□ -0.78
VPS35-210ENST00000568784 PPDPFQ9H3Y8 114 aa10.17□□□□□ -0.78
VPS35-210ENST00000568784 CR1P17927 2039 aa10.17□□□□□ -0.78
VPS35-210ENST00000568784 IBA57-AS1B1ANH7 110 aa10.17□□□□□ -0.78
VPS35-210ENST00000568784 LINC00269Q8N2A0 174 aa10.17□□□□□ -0.78
VPS35-210ENST00000568784 IGHV3OR16-9A0A0B4J2B5 98 aa10.16□□□□□ -0.78
VPS35-210ENST00000568784 FAM222AQ5U5X8 452 aa10.15□□□□□ -0.78
VPS35-210ENST00000568784 BBC3Q96PG8 261 aaPredicted RBP10.15□□□□□ -0.78
VPS35-210ENST00000568784 FHL2Q14192 279 aa10.15□□□□□ -0.78
VPS35-210ENST00000568784 APCP25054 2843 aa10.15□□□□□ -0.78
VPS35-210ENST00000568784 TRAV23DV6A0A075B6W5 121 aa10.15□□□□□ -0.79
VPS35-210ENST00000568784 ATOX1O00244 68 aa10.15□□□□□ -0.79
VPS35-210ENST00000568784 HECTD1Q9ULT8 2610 aa10.15□□□□□ -0.79
VPS35-210ENST00000568784 LINC01006Q8NI28 216 aa10.14□□□□□ -0.79
VPS35-210ENST00000568784 LINC00482Q8N8I6 264 aa10.14□□□□□ -0.79
VPS35-210ENST00000568784 A0A087WZ39 114 aa10.13□□□□□ -0.79
VPS35-210ENST00000568784 FSHBP01225 129 aa10.13□□□□□ -0.79
VPS35-210ENST00000568784 Q8N3U1 123 aa10.13□□□□□ -0.79
VPS35-210ENST00000568784 COX7CP15954 63 aa10.13□□□□□ -0.79
VPS35-210ENST00000568784 HAMPP81172 84 aa10.13□□□□□ -0.79
VPS35-210ENST00000568784 GIG44P09565 113 aaPredicted RBP10.12□□□□□ -0.79
VPS35-210ENST00000568784 ATRQ13535 2644 aa10.12□□□□□ -0.79
VPS35-210ENST00000568784 LINC01600Q96MT4 127 aa10.12□□□□□ -0.79
VPS35-210ENST00000568784 DEFB135Q30KP9 77 aa10.12□□□□□ -0.79
VPS35-210ENST00000568784 C6orf99Q4VX62 202 aa10.12□□□□□ -0.79
VPS35-210ENST00000568784 HILS1P60008 231 aa10.11□□□□□ -0.79
VPS35-210ENST00000568784 CMC4P56277 68 aaPredicted RBP10.11□□□□□ -0.79
VPS35-210ENST00000568784 FAM110AQ9BQ89 295 aa10.11□□□□□ -0.79
VPS35-210ENST00000568784 USP17L23D6RBM5 183 aa10.1□□□□□ -0.79
VPS35-210ENST00000568784 RPL18AQ02543 176 aaKnown RBP10.1□□□□□ -0.79
VPS35-210ENST00000568784 ENHOQ6UWT2 76 aa10.1□□□□□ -0.79
VPS35-210ENST00000568784 C22orf24Q9Y442 160 aa10.1□□□□□ -0.79
VPS35-210ENST00000568784 F8P00451 2351 aa10.09□□□□□ -0.79
VPS35-210ENST00000568784 ITPR2Q14571 2701 aa10.09□□□□□ -0.79
VPS35-210ENST00000568784 PLAC8L1A1L4L8 177 aa10.09□□□□□ -0.79
VPS35-210ENST00000568784 CHCHD10Q8WYQ3 142 aaPredicted RBP10.09□□□□□ -0.79
VPS35-210ENST00000568784 UBL5Q9BZL1 73 aa10.08□□□□□ -0.8
VPS35-210ENST00000568784 IL17DQ8TAD2 202 aa10.08□□□□□ -0.8
VPS35-210ENST00000568784 UNC79Q9P2D8 2635 aa10.07□□□□□ -0.8
VPS35-210ENST00000568784 PRO0255Q9UI72 69 aa10.07□□□□□ -0.8
VPS35-210ENST00000568784 GHRHP01286 108 aa10.07□□□□□ -0.8
VPS35-210ENST00000568784 DAD1P61803 113 aa10.07□□□□□ -0.8
VPS35-210ENST00000568784 FAM19A1Q7Z5A9 133 aa10.07□□□□□ -0.8
VPS35-210ENST00000568784 DSCR8Q96T75 97 aa10.06□□□□□ -0.8
VPS35-210ENST00000568784 XAGE1AQ9HD64 81 aa10.06□□□□□ -0.8
VPS35-210ENST00000568784 IGLV1-51P01701 117 aa10.06□□□□□ -0.8
VPS35-210ENST00000568784 REG3AQ06141 175 aa10.05□□□□□ -0.8
VPS35-210ENST00000568784 C6orf223Q8N319 242 aa10.05□□□□□ -0.8
VPS35-210ENST00000568784 KLK12Q9UKR0 248 aa10.05□□□□□ -0.8
VPS35-210ENST00000568784 UBR5O95071 2799 aaPredicted RBP10.05□□□□□ -0.8
VPS35-210ENST00000568784 FAM19A3Q7Z5A8 133 aa10.04□□□□□ -0.8
VPS35-210ENST00000568784 HELZ2Q9BYK8 2649 aaKnown RBP10.04□□□□□ -0.8
VPS35-210ENST00000568784 J3KT08 172 aa10.04□□□□□ -0.8
VPS35-210ENST00000568784 SPAG11BQ08648 103 aa10.04□□□□□ -0.8
VPS35-210ENST00000568784 UNQ6190/PRO20217Q6UXQ8 127 aa10.04□□□□□ -0.8
VPS35-210ENST00000568784 C20orf197Q8N268 126 aa10.04□□□□□ -0.8
VPS35-210ENST00000568784 TMEM256-PLSCR3K7ERE1 68 aa10.03□□□□□ -0.8
VPS35-210ENST00000568784 Q6JHZ5 121 aa10.03□□□□□ -0.8
VPS35-210ENST00000568784 SCXQ7RTU7 201 aa10.03□□□□□ -0.8
VPS35-210ENST00000568784 Q8N814 137 aa10.03□□□□□ -0.8
VPS35-210ENST00000568784 SERP2Q8N6R1 65 aa10.03□□□□□ -0.8
VPS35-210ENST00000568784 KIR2DL5BQ8NHK3 375 aa10.03□□□□□ -0.8
VPS35-210ENST00000568784 JMJD7-PLA2G4BH0Y9G9 81 aa10.03□□□□□ -0.8
VPS35-210ENST00000568784 Q8IZM0 81 aa10.02□□□□□ -0.8
VPS35-210ENST00000568784 SMR3AQ99954 134 aa10.02□□□□□ -0.8
VPS35-210ENST00000568784 ZNF843Q8N446 348 aa10.02□□□□□ -0.81
VPS35-210ENST00000568784 CCKP06307 115 aa10.01□□□□□ -0.81
VPS35-210ENST00000568784 RBM3P98179 157 aaKnown RBP10.01□□□□□ -0.81
VPS35-210ENST00000568784 UPK3BQ9BT76 320 aa10□□□□□ -0.81
VPS35-210ENST00000568784 CYSTM1Q9H1C7 97 aa10□□□□□ -0.81
VPS35-210ENST00000568784 LINC01561Q8N1V8 128 aa10□□□□□ -0.81
VPS35-210ENST00000568784 Q6ZQY7 126 aa10□□□□□ -0.81
VPS35-210ENST00000568784 CSNK1G2-AS1Q8NCQ2 148 aa10□□□□□ -0.81
VPS35-210ENST00000568784 CD164L2Q6UWJ8 174 aa9.99□□□□□ -0.81
VPS35-210ENST00000568784 FAM19A5Q7Z5A7 132 aaPredicted RBP9.99□□□□□ -0.81
VPS35-210ENST00000568784 C10orf25Q5T742 122 aa9.99□□□□□ -0.81
VPS35-210ENST00000568784 C19orf73Q9NVV2 129 aa9.99□□□□□ -0.81
VPS35-210ENST00000568784 TEP1Q99973 2627 aaKnown RBP9.99□□□□□ -0.81
VPS35-210ENST00000568784 HIGD2BQ4VC39 106 aa9.98□□□□□ -0.81
VPS35-210ENST00000568784 CYSRT1A8MQ03 144 aa9.96□□□□□ -0.82
VPS35-210ENST00000568784 C2orf48Q96LS8 159 aa9.95□□□□□ -0.82
VPS35-210ENST00000568784 IGHV4-28A0A0C4DH34 117 aa9.94□□□□□ -0.82
VPS35-210ENST00000568784 CRYGAP11844 174 aa9.94□□□□□ -0.82
VPS35-210ENST00000568784 ZNF561-AS1K7EIQ3 104 aa9.93□□□□□ -0.82
VPS35-210ENST00000568784 SNURFQ9Y675 71 aa9.93□□□□□ -0.82
VPS35-210ENST00000568784 A0A1B0GUV1 79 aa9.93□□□□□ -0.82
VPS35-210ENST00000568784 NANOS2P60321 138 aaKnown RBP9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms