RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 CKS1BP61024 79 aa12.73□□□□□ -0.37
CLN3-233ENST00000568452 KIAA0087Q14695 138 aa12.73□□□□□ -0.37
CLN3-233ENST00000568452 Q9HAA7 133 aa12.73□□□□□ -0.37
CLN3-233ENST00000568452 A0A1B0GV90 55 aa12.72□□□□□ -0.37
CLN3-233ENST00000568452 IFITM1P13164 125 aa12.71□□□□□ -0.37
CLN3-233ENST00000568452 SPAG11BQ08648 103 aa12.71□□□□□ -0.37
CLN3-233ENST00000568452 ADAMTSL4-AS1Q5T5F5 129 aa12.71□□□□□ -0.37
CLN3-233ENST00000568452 RPL24P83731 157 aaKnown RBP12.7□□□□□ -0.38
CLN3-233ENST00000568452 COPS9Q8WXC6 57 aa12.7□□□□□ -0.38
CLN3-233ENST00000568452 SMIM13P0DJ93 91 aa12.7□□□□□ -0.38
CLN3-233ENST00000568452 MUSTN1Q8IVN3 82 aa12.7□□□□□ -0.38
CLN3-233ENST00000568452 NHP2Q9NX24 153 aaKnown RBP12.7□□□□□ -0.38
CLN3-233ENST00000568452 COX11Q9Y6N1 276 aa12.68□□□□□ -0.38
CLN3-233ENST00000568452 C2orf82Q6UX34 121 aa12.67□□□□□ -0.38
CLN3-233ENST00000568452 MUC7Q8TAX7 377 aa12.67□□□□□ -0.38
CLN3-233ENST00000568452 A0A1B0GWB2 263 aa12.66□□□□□ -0.38
CLN3-233ENST00000568452 ERG28Q9UKR5 140 aa12.66□□□□□ -0.38
CLN3-233ENST00000568452 TGP01266 2768 aa12.66□□□□□ -0.38
CLN3-233ENST00000568452 A0A0U1RRA0 63 aa12.66□□□□□ -0.38
CLN3-233ENST00000568452 ZNF561-AS1K7EIQ3 104 aa12.66□□□□□ -0.38
CLN3-233ENST00000568452 TAX1BP3O14907 124 aa12.66□□□□□ -0.38
CLN3-233ENST00000568452 LINC00158P58513 81 aa12.66□□□□□ -0.38
CLN3-233ENST00000568452 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.65□□□□□ -0.38
CLN3-233ENST00000568452 TTC32Q5I0X7 151 aa12.65□□□□□ -0.38
CLN3-233ENST00000568452 PPDPFQ9H3Y8 114 aa12.65□□□□□ -0.38
CLN3-233ENST00000568452 A4D1N5 150 aa12.64□□□□□ -0.39
CLN3-233ENST00000568452 DAND5Q8N907 189 aa12.64□□□□□ -0.39
CLN3-233ENST00000568452 LINC00308Q8TCZ7 52 aa12.64□□□□□ -0.39
CLN3-233ENST00000568452 NTN5Q8WTR8 489 aaPredicted RBP12.64□□□□□ -0.39
CLN3-233ENST00000568452 F8WDY8 70 aa12.63□□□□□ -0.39
CLN3-233ENST00000568452 COX17Q14061 63 aa12.63□□□□□ -0.39
CLN3-233ENST00000568452 MIR7-3HGQ8N6C7 128 aa12.62□□□□□ -0.39
CLN3-233ENST00000568452 C15orf56Q8N910 161 aa12.62□□□□□ -0.39
CLN3-233ENST00000568452 GVQW2A0A096LPI5 108 aaPredicted RBP12.62□□□□□ -0.39
CLN3-233ENST00000568452 K7ERJ3 54 aa12.62□□□□□ -0.39
CLN3-233ENST00000568452 PFN2P35080 140 aa12.62□□□□□ -0.39
CLN3-233ENST00000568452 NPC2P61916 151 aa12.62□□□□□ -0.39
CLN3-233ENST00000568452 C6orf223Q8N319 242 aa12.62□□□□□ -0.39
CLN3-233ENST00000568452 C2orf48Q96LS8 159 aa12.62□□□□□ -0.39
CLN3-233ENST00000568452 HIGD2BQ4VC39 106 aa12.61□□□□□ -0.39
CLN3-233ENST00000568452 RAB37Q96AX2 223 aa12.61□□□□□ -0.39
CLN3-233ENST00000568452 DNAH7Q8WXX0 4024 aa12.6□□□□□ -0.39
CLN3-233ENST00000568452 UNQ6190/PRO20217Q6UXQ8 127 aa12.6□□□□□ -0.39
CLN3-233ENST00000568452 KRTAP1-5Q9BYS1 174 aa12.6□□□□□ -0.39
CLN3-233ENST00000568452 A0A0B4J2C4 111 aa12.59□□□□□ -0.39
CLN3-233ENST00000568452 C9orf118A6NHY6 69 aa12.59□□□□□ -0.39
CLN3-233ENST00000568452 C3orf84H3BNL1 204 aa12.59□□□□□ -0.39
CLN3-233ENST00000568452 CFC1BP0CG36 223 aa12.59□□□□□ -0.39
CLN3-233ENST00000568452 CFC1P0CG37 223 aa12.59□□□□□ -0.39
CLN3-233ENST00000568452 LINC00526Q96FQ7 95 aa12.59□□□□□ -0.39
CLN3-233ENST00000568452 CAMK2N2Q96S95 79 aa12.59□□□□□ -0.39
CLN3-233ENST00000568452 NBDYA0A0U1RRE5 68 aa12.59□□□□□ -0.39
CLN3-233ENST00000568452 TRBV30A0A0K0K1B3 111 aa12.58□□□□□ -0.4
CLN3-233ENST00000568452 C10orf25Q5T742 122 aa12.57□□□□□ -0.4
CLN3-233ENST00000568452 SOSTDC1Q6X4U4 206 aa12.57□□□□□ -0.4
CLN3-233ENST00000568452 PRO1854Q9UHT4 67 aa12.56□□□□□ -0.4
CLN3-233ENST00000568452 DNAH1Q9P2D7 4330 aa12.56□□□□□ -0.4
CLN3-233ENST00000568452 USP17L23D6RBM5 183 aa12.55□□□□□ -0.4
CLN3-233ENST00000568452 EIF4EBP3O60516 100 aaPredicted RBP12.55□□□□□ -0.4
CLN3-233ENST00000568452 H3BUT2 72 aa12.54□□□□□ -0.4
CLN3-233ENST00000568452 C9orf116Q5BN46 136 aaPredicted RBP12.54□□□□□ -0.4
CLN3-233ENST00000568452 CASC10Q5T4H9 136 aa12.54□□□□□ -0.4
CLN3-233ENST00000568452 C6orf48Q9UBA6 75 aa12.54□□□□□ -0.4
CLN3-233ENST00000568452 PLECQ15149 4684 aaKnown RBP12.53□□□□□ -0.4
CLN3-233ENST00000568452 PSCAO43653 123 aa12.53□□□□□ -0.4
CLN3-233ENST00000568452 PGPEP1Q9NXJ5 209 aa12.53□□□□□ -0.4
CLN3-233ENST00000568452 LOC107984156A0A0G2JMH3 177 aa12.52□□□□□ -0.4
CLN3-233ENST00000568452 SYCNQ0VAF6 134 aa12.52□□□□□ -0.4
CLN3-233ENST00000568452 Q6ZRU5 148 aa12.52□□□□□ -0.4
CLN3-233ENST00000568452 ARL17AQ8IVW1 177 aa12.52□□□□□ -0.4
CLN3-233ENST00000568452 SND1-IT1Q9HBX3 110 aa12.51□□□□□ -0.41
CLN3-233ENST00000568452 CSMD3Q7Z407 3707 aa12.5□□□□□ -0.41
CLN3-233ENST00000568452 TSPAN13O95857 204 aa12.49□□□□□ -0.41
CLN3-233ENST00000568452 RNF151Q2KHN1 245 aa12.49□□□□□ -0.41
CLN3-233ENST00000568452 NAA38Q9BRA0 125 aaKnown RBP12.49□□□□□ -0.41
CLN3-233ENST00000568452 A0A1W2PPM0 123 aa12.48□□□□□ -0.41
CLN3-233ENST00000568452 VAMP3Q15836 100 aa12.48□□□□□ -0.41
CLN3-233ENST00000568452 CARD19Q96LW7 228 aa12.48□□□□□ -0.41
CLN3-233ENST00000568452 VPS13DQ5THJ4 4388 aa12.48□□□□□ -0.41
CLN3-233ENST00000568452 FABP2P12104 132 aa12.48□□□□□ -0.41
CLN3-233ENST00000568452 STARD9Q9P2P6 4700 aa12.47□□□□□ -0.41
CLN3-233ENST00000568452 C14orf177Q52M58 125 aa12.47□□□□□ -0.41
CLN3-233ENST00000568452 TRAV13-2A0A0B4J235 113 aa12.46□□□□□ -0.41
CLN3-233ENST00000568452 NDUFC2O95298 119 aa12.46□□□□□ -0.41
CLN3-233ENST00000568452 NDUFC2-KCTD14E9PQ53 114 aa12.45□□□□□ -0.42
CLN3-233ENST00000568452 LECT2O14960 151 aa12.45□□□□□ -0.42
CLN3-233ENST00000568452 Q1RN00 199 aa12.45□□□□□ -0.42
CLN3-233ENST00000568452 LYRM7Q5U5X0 104 aa12.45□□□□□ -0.42
CLN3-233ENST00000568452 RPL13AP40429 203 aaKnown RBP12.44□□□□□ -0.42
CLN3-233ENST00000568452 H7C2G1 150 aa12.44□□□□□ -0.42
CLN3-233ENST00000568452 M0R2N4 97 aa12.44□□□□□ -0.42
CLN3-233ENST00000568452 Q6ZR54 194 aa12.42□□□□□ -0.42
CLN3-233ENST00000568452 IGKV2-28A0A075B6P5 120 aa12.41□□□□□ -0.42
CLN3-233ENST00000568452 LY6G6CO95867 125 aa12.41□□□□□ -0.42
CLN3-233ENST00000568452 IGKV2D-28P01615 120 aa12.41□□□□□ -0.42
CLN3-233ENST00000568452 SLPIP03973 132 aa12.41□□□□□ -0.42
CLN3-233ENST00000568452 TLX1NBP0CAT3 122 aa12.41□□□□□ -0.42
CLN3-233ENST00000568452 PSMB2P49721 201 aa12.41□□□□□ -0.42
CLN3-233ENST00000568452 Q6ZRN7 208 aaPredicted RBP12.41□□□□□ -0.42
CLN3-233ENST00000568452 GTF2H5Q6ZYL4 71 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms