RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 C1orf158Q8N1D5 194 aa9.42□□□□□ -0.9
VPS4A-204ENST00000566354 COX7A2LO14548 114 aa9.41□□□□□ -0.9
VPS4A-204ENST00000566354 C4orf26Q17RF5 130 aa9.41□□□□□ -0.9
VPS4A-204ENST00000566354 ODF3L2Q3SX64 289 aa9.41□□□□□ -0.9
VPS4A-204ENST00000566354 LINC00482Q8N8I6 264 aa9.41□□□□□ -0.9
VPS4A-204ENST00000566354 ZNF625Q96I27 306 aaPredicted RBP9.41□□□□□ -0.9
VPS4A-204ENST00000566354 TRAV13-1A0A0B4J241 112 aa9.4□□□□□ -0.9
VPS4A-204ENST00000566354 K7EQD1 137 aa9.4□□□□□ -0.9
VPS4A-204ENST00000566354 NDUFC2-KCTD14E9PQ53 114 aa9.4□□□□□ -0.9
VPS4A-204ENST00000566354 NTM-AS1Q6ZSK4 140 aa9.4□□□□□ -0.9
VPS4A-204ENST00000566354 CDC42SE2Q9NRR3 84 aa9.39□□□□□ -0.91
VPS4A-204ENST00000566354 A0A0U1RRA0 63 aa9.39□□□□□ -0.91
VPS4A-204ENST00000566354 SOSTDC1Q6X4U4 206 aa9.39□□□□□ -0.91
VPS4A-204ENST00000566354 FAM236AA0A1B0GUQ0 79 aa9.37□□□□□ -0.91
VPS4A-204ENST00000566354 FAM236BA0A1B0GV22 79 aa9.37□□□□□ -0.91
VPS4A-204ENST00000566354 ATOX1O00244 68 aa9.37□□□□□ -0.91
VPS4A-204ENST00000566354 Q6ZTI0 123 aa9.37□□□□□ -0.91
VPS4A-204ENST00000566354 IGLV1-51P01701 117 aa9.37□□□□□ -0.91
VPS4A-204ENST00000566354 PKD1L1Q8TDX9 2849 aa9.37□□□□□ -0.91
VPS4A-204ENST00000566354 RPL35AP18077 110 aaKnown RBP9.36□□□□□ -0.91
VPS4A-204ENST00000566354 C1orf195Q5TG92 126 aa9.36□□□□□ -0.91
VPS4A-204ENST00000566354 C3orf56Q8N813 242 aa9.36□□□□□ -0.91
VPS4A-204ENST00000566354 TMEM243Q9BU79 118 aa9.35□□□□□ -0.91
VPS4A-204ENST00000566354 UBE2L6O14933 153 aa9.34□□□□□ -0.91
VPS4A-204ENST00000566354 C2orf48Q96LS8 159 aa9.34□□□□□ -0.91
VPS4A-204ENST00000566354 EPM2AB3EWF7 344 aa9.34□□□□□ -0.91
VPS4A-204ENST00000566354 PFN2P35080 140 aa9.33□□□□□ -0.92
VPS4A-204ENST00000566354 LINC00336Q6ZUF6 198 aa9.33□□□□□ -0.92
VPS4A-204ENST00000566354 LINC00643Q86TS7 51 aa9.33□□□□□ -0.92
VPS4A-204ENST00000566354 NOP10Q9NPE3 64 aaKnown RBP9.33□□□□□ -0.92
VPS4A-204ENST00000566354 TRAV13-2A0A0B4J235 113 aa9.32□□□□□ -0.92
VPS4A-204ENST00000566354 BAALC-AS2P0C853 105 aa9.32□□□□□ -0.92
VPS4A-204ENST00000566354 HIST1H4AP62805 103 aaKnown RBP9.32□□□□□ -0.92
VPS4A-204ENST00000566354 CMC4P56277 68 aaPredicted RBP9.31□□□□□ -0.92
VPS4A-204ENST00000566354 C5orf38Q86SI9 138 aa9.31□□□□□ -0.92
VPS4A-204ENST00000566354 KLK5Q9Y337 293 aaPredicted RBP9.31□□□□□ -0.92
VPS4A-204ENST00000566354 RPL28P46779 137 aaKnown RBP9.31□□□□□ -0.92
VPS4A-204ENST00000566354 FAM222AQ5U5X8 452 aa9.31□□□□□ -0.92
VPS4A-204ENST00000566354 TRBV6-4A0A1B0GX49 114 aa9.3□□□□□ -0.92
VPS4A-204ENST00000566354 COX7B2Q8TF08 81 aa9.3□□□□□ -0.92
VPS4A-204ENST00000566354 C16orf74Q96GX8 76 aa9.3□□□□□ -0.92
VPS4A-204ENST00000566354 WFDC10AQ9H1F0 79 aa9.3□□□□□ -0.92
VPS4A-204ENST00000566354 TRGV2A0A075B6R0 118 aa9.3□□□□□ -0.92
VPS4A-204ENST00000566354 NDUFC2O95298 119 aa9.3□□□□□ -0.92
VPS4A-204ENST00000566354 C9orf66Q5T8R8 295 aa9.3□□□□□ -0.92
VPS4A-204ENST00000566354 WFDC9Q8NEX5 89 aa9.3□□□□□ -0.92
VPS4A-204ENST00000566354 ZNF561-AS1K7EIQ3 104 aa9.29□□□□□ -0.92
VPS4A-204ENST00000566354 CRPP02741 224 aa9.29□□□□□ -0.92
VPS4A-204ENST00000566354 FAM218AQ96MZ4 157 aa9.29□□□□□ -0.92
VPS4A-204ENST00000566354 PLAC8L1A1L4L8 177 aa9.28□□□□□ -0.92
VPS4A-204ENST00000566354 GIG44P09565 113 aaPredicted RBP9.28□□□□□ -0.92
VPS4A-204ENST00000566354 INAFM2P0DMQ5 153 aa9.28□□□□□ -0.92
VPS4A-204ENST00000566354 SDIM1Q6ZPB5 146 aa9.28□□□□□ -0.92
VPS4A-204ENST00000566354 MIR7-3HGQ8N6C7 128 aa9.28□□□□□ -0.92
VPS4A-204ENST00000566354 C19orf73Q9NVV2 129 aa9.28□□□□□ -0.92
VPS4A-204ENST00000566354 OXTP01178 125 aa9.27□□□□□ -0.92
VPS4A-204ENST00000566354 OVOL2Q9BRP0 275 aa9.27□□□□□ -0.92
VPS4A-204ENST00000566354 SND1-IT1Q9HBX3 110 aa9.27□□□□□ -0.92
VPS4A-204ENST00000566354 C22orf24Q9Y442 160 aa9.27□□□□□ -0.92
VPS4A-204ENST00000566354 CMYA5Q8N3K9 4069 aa9.27□□□□□ -0.93
VPS4A-204ENST00000566354 ANK2Q01484 3957 aa9.26□□□□□ -0.93
VPS4A-204ENST00000566354 TRGV4A0A0C4DH28 118 aa9.26□□□□□ -0.93
VPS4A-204ENST00000566354 LOC100131303A0A0U1RQF7 123 aa9.26□□□□□ -0.93
VPS4A-204ENST00000566354 LINC00337Q8N6G1 96 aa9.26□□□□□ -0.93
VPS4A-204ENST00000566354 TOMM7Q9P0U1 55 aa9.26□□□□□ -0.93
VPS4A-204ENST00000566354 IGKV2-28A0A075B6P5 120 aa9.26□□□□□ -0.93
VPS4A-204ENST00000566354 IGKV2D-28P01615 120 aa9.26□□□□□ -0.93
VPS4A-204ENST00000566354 MDFIQ99750 246 aa9.26□□□□□ -0.93
VPS4A-204ENST00000566354 PKIGQ9Y2B9 76 aa9.26□□□□□ -0.93
VPS4A-204ENST00000566354 IGHV3OR16-9A0A0B4J2B5 98 aa9.25□□□□□ -0.93
VPS4A-204ENST00000566354 LINC00158P58513 81 aa9.25□□□□□ -0.93
VPS4A-204ENST00000566354 SMCR5Q8TEV8 140 aa9.25□□□□□ -0.93
VPS4A-204ENST00000566354 TRBV6-8A0A0A6YYG3 113 aa9.25□□□□□ -0.93
VPS4A-204ENST00000566354 SERP1Q9Y6X1 66 aa9.25□□□□□ -0.93
VPS4A-204ENST00000566354 IBA57-AS1B1ANH7 110 aa9.24□□□□□ -0.93
VPS4A-204ENST00000566354 SERP2Q8N6R1 65 aa9.24□□□□□ -0.93
VPS4A-204ENST00000566354 UPK3BQ9BT76 320 aa9.24□□□□□ -0.93
VPS4A-204ENST00000566354 Q9HAA7 133 aa9.24□□□□□ -0.93
VPS4A-204ENST00000566354 IGLV4-60A0A075B6I1 120 aa9.23□□□□□ -0.93
VPS4A-204ENST00000566354 IGKV3OR2-268A0A0C4DH90 116 aa9.23□□□□□ -0.93
VPS4A-204ENST00000566354 hADV29S1A0JD25 119 aa9.23□□□□□ -0.93
VPS4A-204ENST00000566354 H0YGX0 51 aa9.23□□□□□ -0.93
VPS4A-204ENST00000566354 A0A087WZ39 114 aa9.23□□□□□ -0.93
VPS4A-204ENST00000566354 FAM236DA0A1B0GTK5 79 aa9.23□□□□□ -0.93
VPS4A-204ENST00000566354 DNAL4O96015 105 aa9.23□□□□□ -0.93
VPS4A-204ENST00000566354 FAM236CP0DP71 79 aa9.23□□□□□ -0.93
VPS4A-204ENST00000566354 NOTCH1P46531 2555 aa9.23□□□□□ -0.93
VPS4A-204ENST00000566354 CSNK1G2-AS1Q8NCQ2 148 aa9.23□□□□□ -0.93
VPS4A-204ENST00000566354 SMIM11BQ8TCY0 68 aa9.23□□□□□ -0.93
VPS4A-204ENST00000566354 CCL18P55774 89 aa9.22□□□□□ -0.93
VPS4A-204ENST00000566354 FHL2Q14192 279 aa9.22□□□□□ -0.93
VPS4A-204ENST00000566354 FAM19A1Q7Z5A9 133 aa9.21□□□□□ -0.94
VPS4A-204ENST00000566354 NBEAL1Q6ZS30 2694 aa9.2□□□□□ -0.94
VPS4A-204ENST00000566354 SMIM26A0A096LP01 95 aa9.2□□□□□ -0.94
VPS4A-204ENST00000566354 NBEAL2Q6ZNJ1 2754 aa9.2□□□□□ -0.94
VPS4A-204ENST00000566354 RPL18AQ02543 176 aaKnown RBP9.2□□□□□ -0.94
VPS4A-204ENST00000566354 DSCR8Q96T75 97 aa9.2□□□□□ -0.94
VPS4A-204ENST00000566354 MGAM2Q2M2H8 2515 aa9.2□□□□□ -0.94
VPS4A-204ENST00000566354 A0A087WYN8 130 aa9.19□□□□□ -0.94
VPS4A-204ENST00000566354 LAMTOR3Q9UHA4 124 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms