RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 IGSF23A1L1A6 192 aa2.5□□□□□ -2.01
VPS35-204ENST00000563884 ARL14EPLP0DKL9 152 aa2.5□□□□□ -2.01
VPS35-204ENST00000563884 SPRR2EP22531 72 aa2.5□□□□□ -2.01
VPS35-204ENST00000563884 SPRR2BP35325 72 aa2.5□□□□□ -2.01
VPS35-204ENST00000563884 SPRR2AP35326 72 aa2.5□□□□□ -2.01
VPS35-204ENST00000563884 AQP4P55087 323 aa2.5□□□□□ -2.01
VPS35-204ENST00000563884 SSBP3-AS1Q7Z2R9 100 aa2.5□□□□□ -2.01
VPS35-204ENST00000563884 FAM19A3Q7Z5A8 133 aa2.5□□□□□ -2.01
VPS35-204ENST00000563884 DEDD2Q8WXF8 326 aa2.5□□□□□ -2.01
VPS35-204ENST00000563884 FAM104AQ969W3 186 aa2.5□□□□□ -2.01
VPS35-204ENST00000563884 HIST1H2BAQ96A08 127 aa2.5□□□□□ -2.01
VPS35-204ENST00000563884 FMC1Q96HJ9 113 aa2.5□□□□□ -2.01
VPS35-204ENST00000563884 CNBD2Q96M20 576 aa2.5□□□□□ -2.01
VPS35-204ENST00000563884 TMEM242Q9NWH2 141 aa2.5□□□□□ -2.01
VPS35-204ENST00000563884 TGIF2-C20orf24A0A0A6YYL0 155 aa2.49□□□□□ -2.01
VPS35-204ENST00000563884 MUC21A0A140T8X8 626 aa2.49□□□□□ -2.01
VPS35-204ENST00000563884 C7orf77A4D0Y5 90 aa2.49□□□□□ -2.01
VPS35-204ENST00000563884 I3L3M4 83 aa2.49□□□□□ -2.01
VPS35-204ENST00000563884 PEX7O00628 323 aa2.49□□□□□ -2.01
VPS35-204ENST00000563884 RGS5O15539 181 aa2.49□□□□□ -2.01
VPS35-204ENST00000563884 UPK1BO75841 260 aa2.49□□□□□ -2.01
VPS35-204ENST00000563884 CRIP1P50238 77 aa2.49□□□□□ -2.01
VPS35-204ENST00000563884 SSTP61278 116 aa2.49□□□□□ -2.01
VPS35-204ENST00000563884 LSM3P62310 102 aaKnown RBP2.49□□□□□ -2.01
VPS35-204ENST00000563884 TEX261Q6UWH6 196 aa2.49□□□□□ -2.01
VPS35-204ENST00000563884 C20orf166-AS1Q96NR2 134 aa2.49□□□□□ -2.01
VPS35-204ENST00000563884 HIGD2AQ9BW72 106 aa2.49□□□□□ -2.01
VPS35-204ENST00000563884 NKX6-2Q9C056 277 aaPredicted RBP2.49□□□□□ -2.01
VPS35-204ENST00000563884 VCX3BQ9H321 246 aa2.49□□□□□ -2.01
VPS35-204ENST00000563884 XAGE1AQ9HD64 81 aa2.49□□□□□ -2.01
VPS35-204ENST00000563884 CSDC2Q9Y534 153 aaKnown RBP2.49□□□□□ -2.01
VPS35-204ENST00000563884 A0A1W2PRE2 83 aa2.48□□□□□ -2.01
VPS35-204ENST00000563884 A6NN06 94 aa2.48□□□□□ -2.01
VPS35-204ENST00000563884 PMCHP20382 165 aa2.48□□□□□ -2.01
VPS35-204ENST00000563884 CDC34P49427 236 aaPredicted RBP2.48□□□□□ -2.01
VPS35-204ENST00000563884 RPL32P62910 135 aaKnown RBP2.48□□□□□ -2.01
VPS35-204ENST00000563884 NEDD8Q15843 81 aa2.48□□□□□ -2.01
VPS35-204ENST00000563884 LINC00469Q8N7U9 141 aa2.48□□□□□ -2.01
VPS35-204ENST00000563884 SCGB1C1Q8TD33 95 aa2.48□□□□□ -2.01
VPS35-204ENST00000563884 VCX3AQ9NNX9 186 aa2.48□□□□□ -2.01
VPS35-204ENST00000563884 IGKV2-28A0A075B6P5 120 aa2.47□□□□□ -2.01
VPS35-204ENST00000563884 SDHAF1A6NFY7 115 aa2.47□□□□□ -2.01
VPS35-204ENST00000563884 FAM25EA8MYX2 175 aa2.47□□□□□ -2.01
VPS35-204ENST00000563884 CXorf1O96002 111 aa2.47□□□□□ -2.01
VPS35-204ENST00000563884 IGKV2D-28P01615 120 aa2.47□□□□□ -2.01
VPS35-204ENST00000563884 GCHFRP30047 84 aa2.47□□□□□ -2.01
VPS35-204ENST00000563884 FOXA3P55318 350 aaPredicted RBP2.47□□□□□ -2.01
VPS35-204ENST00000563884 DEFA3P59666 94 aa2.47□□□□□ -2.01
VPS35-204ENST00000563884 CKS1BP61024 79 aa2.47□□□□□ -2.01
VPS35-204ENST00000563884 MOBPQ13875 183 aa2.47□□□□□ -2.01
VPS35-204ENST00000563884 TOMM5Q8N4H5 51 aa2.47□□□□□ -2.01
VPS35-204ENST00000563884 TCEAL7Q9BRU2 100 aa2.47□□□□□ -2.01
VPS35-204ENST00000563884 TPPP3Q9BW30 176 aa2.47□□□□□ -2.01
VPS35-204ENST00000563884 TMEM126AQ9H061 195 aa2.47□□□□□ -2.01
VPS35-204ENST00000563884 FXYD6-FXYD2A0A087WZ82 144 aa2.46□□□□□ -2.02
VPS35-204ENST00000563884 IGHV3OR16-9A0A0B4J2B5 98 aa2.46□□□□□ -2.02
VPS35-204ENST00000563884 FAM236DA0A1B0GTK5 79 aa2.46□□□□□ -2.02
VPS35-204ENST00000563884 LTAP01374 205 aa2.46□□□□□ -2.02
VPS35-204ENST00000563884 IFNA1P01562 189 aa2.46□□□□□ -2.02
VPS35-204ENST00000563884 STAG3L2P0CL84 134 aa2.46□□□□□ -2.02
VPS35-204ENST00000563884 STAG3L3P0CL85 134 aa2.46□□□□□ -2.02
VPS35-204ENST00000563884 FAM236CP0DP71 79 aa2.46□□□□□ -2.02
VPS35-204ENST00000563884 ATP11AUNQ6ZP68 121 aa2.46□□□□□ -2.02
VPS35-204ENST00000563884 RAB26Q9ULW5 256 aa2.46□□□□□ -2.02
VPS35-204ENST00000563884 XKRY2A2RUG3 117 aa2.45□□□□□ -2.02
VPS35-204ENST00000563884 F2Z2F3 143 aa2.45□□□□□ -2.02
VPS35-204ENST00000563884 HMGB3O15347 200 aaKnown RBP2.45□□□□□ -2.02
VPS35-204ENST00000563884 NDUFB6O95139 128 aa2.45□□□□□ -2.02
VPS35-204ENST00000563884 KIAA0087Q14695 138 aa2.45□□□□□ -2.02
VPS35-204ENST00000563884 C2orf82Q6UX34 121 aa2.45□□□□□ -2.02
VPS35-204ENST00000563884 SMIM15Q7Z3B0 74 aa2.45□□□□□ -2.02
VPS35-204ENST00000563884 Q8N9L7 120 aa2.45□□□□□ -2.02
VPS35-204ENST00000563884 S100A9P06702 114 aaKnown RBP2.44□□□□□ -2.02
VPS35-204ENST00000563884 FCER1GP30273 86 aa2.44□□□□□ -2.02
VPS35-204ENST00000563884 AKR1C3P42330 323 aa2.44□□□□□ -2.02
VPS35-204ENST00000563884 LINC00483Q53H64 154 aa2.44□□□□□ -2.02
VPS35-204ENST00000563884 AKAP14Q86UN6 197 aa2.44□□□□□ -2.02
VPS35-204ENST00000563884 GATD1Q8NB37 220 aa2.44□□□□□ -2.02
VPS35-204ENST00000563884 STOML3Q8TAV4 291 aa2.44□□□□□ -2.02
VPS35-204ENST00000563884 TIMM17AQ99595 171 aa2.44□□□□□ -2.02
VPS35-204ENST00000563884 TIMM21Q9BVV7 248 aa2.44□□□□□ -2.02
VPS35-204ENST00000563884 Q9H521 79 aa2.44□□□□□ -2.02
VPS35-204ENST00000563884 MBP02144 154 aa2.43□□□□□ -2.02
VPS35-204ENST00000563884 SPRR2DP22532 72 aa2.43□□□□□ -2.02
VPS35-204ENST00000563884 HBBP68871 147 aa2.43□□□□□ -2.02
VPS35-204ENST00000563884 RNASE13Q5GAN3 156 aaKnown RBP2.43□□□□□ -2.02
VPS35-204ENST00000563884 C9orf153Q5TBE3 101 aa2.43□□□□□ -2.02
VPS35-204ENST00000563884 Q6ZUT4 128 aa2.43□□□□□ -2.02
VPS35-204ENST00000563884 LINC01561Q8N1V8 128 aa2.43□□□□□ -2.02
VPS35-204ENST00000563884 RPL39LQ96EH5 51 aaKnown RBP2.43□□□□□ -2.02
VPS35-204ENST00000563884 ST20Q9HBF5 79 aa2.43□□□□□ -2.02
VPS35-204ENST00000563884 TRBV6-5A0A0K0K1A5 114 aa2.42□□□□□ -2.02
VPS35-204ENST00000563884 NAP1L6A6NFF2 107 aa2.42□□□□□ -2.02
VPS35-204ENST00000563884 TMEM238C9JI98 176 aa2.42□□□□□ -2.02
VPS35-204ENST00000563884 F8VRH5 84 aa2.42□□□□□ -2.02
VPS35-204ENST00000563884 M0R378 163 aa2.42□□□□□ -2.02
VPS35-204ENST00000563884 IGLC6P0CF74 106 aa2.42□□□□□ -2.02
VPS35-204ENST00000563884 CXCL5P42830 114 aa2.42□□□□□ -2.02
VPS35-204ENST00000563884 C6orf226Q5I0X4 101 aa2.42□□□□□ -2.02
VPS35-204ENST00000563884 TRBV27A0A0K0K1C4 114 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms