RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 TMEM105Q8N8V8 129 aa4.46□□□□□ -1.7
CLK3-212ENST00000563418 MYO18BQ8IUG5 2567 aa4.46□□□□□ -1.7
CLK3-212ENST00000563418 KPRPQ5T749 579 aaPredicted RBP4.45□□□□□ -1.7
CLK3-212ENST00000563418 MSMPQ1L6U9 139 aa4.45□□□□□ -1.7
CLK3-212ENST00000563418 Q6ZTI0 123 aa4.45□□□□□ -1.7
CLK3-212ENST00000563418 SPANXA2-OT1Q8N9U9 137 aa4.45□□□□□ -1.7
CLK3-212ENST00000563418 TRBV7-4A0A0J9YYF1 115 aa4.45□□□□□ -1.7
CLK3-212ENST00000563418 LINC00315P59091 139 aa4.45□□□□□ -1.7
CLK3-212ENST00000563418 HIVEP3Q5T1R4 2406 aa4.44□□□□□ -1.7
CLK3-212ENST00000563418 IGHV4-59P01825 116 aa4.44□□□□□ -1.7
CLK3-212ENST00000563418 A0A096LPF7 62 aa4.44□□□□□ -1.7
CLK3-212ENST00000563418 A0A1B0GUV1 79 aa4.44□□□□□ -1.7
CLK3-212ENST00000563418 LY6HO94772 140 aa4.44□□□□□ -1.7
CLK3-212ENST00000563418 PROK1P58294 105 aa4.43□□□□□ -1.7
CLK3-212ENST00000563418 F8W735 103 aaPredicted RBP4.43□□□□□ -1.7
CLK3-212ENST00000563418 SPART-AS1P0CW21 52 aa4.43□□□□□ -1.7
CLK3-212ENST00000563418 EGFEM1PQ0D2K5 195 aa4.43□□□□□ -1.7
CLK3-212ENST00000563418 KLK12Q9UKR0 248 aa4.43□□□□□ -1.7
CLK3-212ENST00000563418 A0A1B0GU69 56 aa4.42□□□□□ -1.7
CLK3-212ENST00000563418 DNAJC9-AS1A6NH13 148 aa4.42□□□□□ -1.7
CLK3-212ENST00000563418 SLURP1P55000 103 aa4.42□□□□□ -1.7
CLK3-212ENST00000563418 IGHV4-30-2A0A087WSY4 118 aa4.42□□□□□ -1.7
CLK3-212ENST00000563418 FP248Q71RG6 208 aaPredicted RBP4.42□□□□□ -1.7
CLK3-212ENST00000563418 LINC00167Q96N53 147 aa4.42□□□□□ -1.7
CLK3-212ENST00000563418 SYCNQ0VAF6 134 aa4.42□□□□□ -1.7
CLK3-212ENST00000563418 XAGE1AQ9HD64 81 aa4.41□□□□□ -1.7
CLK3-212ENST00000563418 A6NDX4 124 aa4.41□□□□□ -1.7
CLK3-212ENST00000563418 ACYP2P14621 99 aa4.41□□□□□ -1.7
CLK3-212ENST00000563418 IGKV2-28A0A075B6P5 120 aa4.4□□□□□ -1.7
CLK3-212ENST00000563418 A0A0J9YWU9 116 aa4.4□□□□□ -1.7
CLK3-212ENST00000563418 RPL37AP8A6NKH3 93 aa4.4□□□□□ -1.7
CLK3-212ENST00000563418 IGKV2D-28P01615 120 aa4.4□□□□□ -1.7
CLK3-212ENST00000563418 LYPD5Q6UWN5 251 aa4.4□□□□□ -1.7
CLK3-212ENST00000563418 Q75L30 129 aa4.4□□□□□ -1.7
CLK3-212ENST00000563418 ZNF706Q9Y5V0 76 aaPredicted RBP4.4□□□□□ -1.7
CLK3-212ENST00000563418 NBASA2RRP1 2371 aa4.4□□□□□ -1.71
CLK3-212ENST00000563418 Q6ZTC4 211 aa4.4□□□□□ -1.71
CLK3-212ENST00000563418 COL27A1Q8IZC6 1860 aaPredicted RBP4.4□□□□□ -1.71
CLK3-212ENST00000563418 CYSRT1A8MQ03 144 aa4.4□□□□□ -1.71
CLK3-212ENST00000563418 COA5Q86WW8 74 aa4.4□□□□□ -1.71
CLK3-212ENST00000563418 SPG11Q96JI7 2443 aa4.39□□□□□ -1.71
CLK3-212ENST00000563418 LINC01554Q52M75 96 aa4.39□□□□□ -1.71
CLK3-212ENST00000563418 UBE2DNLQ8IWF7 75 aa4.39□□□□□ -1.71
CLK3-212ENST00000563418 RNF223E7ERA6 249 aa4.39□□□□□ -1.71
CLK3-212ENST00000563418 C14orf177Q52M58 125 aa4.39□□□□□ -1.71
CLK3-212ENST00000563418 IGLV1-40P01703 118 aa4.39□□□□□ -1.71
CLK3-212ENST00000563418 IGHV3OR16-9A0A0B4J2B5 98 aa4.39□□□□□ -1.71
CLK3-212ENST00000563418 BBC3Q96PG8 261 aaPredicted RBP4.39□□□□□ -1.71
CLK3-212ENST00000563418 Q9BRP9 147 aa4.39□□□□□ -1.71
CLK3-212ENST00000563418 CUL9Q8IWT3 2517 aa4.38□□□□□ -1.71
CLK3-212ENST00000563418 CSPG4Q6UVK1 2322 aa4.38□□□□□ -1.71
CLK3-212ENST00000563418 IGHV4-38-2P0DP08 117 aa4.38□□□□□ -1.71
CLK3-212ENST00000563418 Q8NBF4 154 aa4.38□□□□□ -1.71
CLK3-212ENST00000563418 PRR3P79522 188 aaKnown RBP4.37□□□□□ -1.71
CLK3-212ENST00000563418 FBXL19-AS1Q494R0 122 aa4.37□□□□□ -1.71
CLK3-212ENST00000563418 LOC100131303A0A0U1RQF7 123 aa4.37□□□□□ -1.71
CLK3-212ENST00000563418 DEFB136Q30KP8 78 aa4.37□□□□□ -1.71
CLK3-212ENST00000563418 LELP1Q5T871 98 aa4.37□□□□□ -1.71
CLK3-212ENST00000563418 UQCR11O14957 56 aa4.37□□□□□ -1.71
CLK3-212ENST00000563418 ASB16-AS1Q495Z4 193 aa4.36□□□□□ -1.71
CLK3-212ENST00000563418 LINC01006Q8NI28 216 aa4.36□□□□□ -1.71
CLK3-212ENST00000563418 EIF4EBP3O60516 100 aaPredicted RBP4.36□□□□□ -1.71
CLK3-212ENST00000563418 PCOTHQ58A44 107 aa4.36□□□□□ -1.71
CLK3-212ENST00000563418 MUC4Q99102 2169 aa4.36□□□□□ -1.71
CLK3-212ENST00000563418 C6orf48Q9UBA6 75 aa4.36□□□□□ -1.71
CLK3-212ENST00000563418 OXTP01178 125 aa4.35□□□□□ -1.71
CLK3-212ENST00000563418 FAM208BQ5VWN6 2430 aa4.35□□□□□ -1.71
CLK3-212ENST00000563418 C19orf84I3L1E1 186 aa4.35□□□□□ -1.71
CLK3-212ENST00000563418 IGLV6-57P01721 117 aa4.35□□□□□ -1.71
CLK3-212ENST00000563418 UNQ6190/PRO20217Q6UXQ8 127 aa4.35□□□□□ -1.71
CLK3-212ENST00000563418 LINC00588Q9Y4M8 146 aa4.35□□□□□ -1.71
CLK3-212ENST00000563418 IGHV4-31P0DP07 118 aa4.35□□□□□ -1.71
CLK3-212ENST00000563418 PHF5AQ7RTV0 110 aaKnown RBP4.35□□□□□ -1.71
CLK3-212ENST00000563418 OCR1Q9BZK8 76 aa4.35□□□□□ -1.71
CLK3-212ENST00000563418 AVPP01185 164 aa4.35□□□□□ -1.71
CLK3-212ENST00000563418 KLK9Q2XQG4 91 aa4.34□□□□□ -1.71
CLK3-212ENST00000563418 REG3GQ6UW15 175 aa4.34□□□□□ -1.71
CLK3-212ENST00000563418 MOBPQ13875 183 aa4.34□□□□□ -1.71
CLK3-212ENST00000563418 A0A087WSZ3 146 aa4.33□□□□□ -1.72
CLK3-212ENST00000563418 C10orf142B7Z368 130 aa4.33□□□□□ -1.72
CLK3-212ENST00000563418 GRNP28799 593 aaKnown RBP4.33□□□□□ -1.72
CLK3-212ENST00000563418 CYSTM1Q9H1C7 97 aa4.33□□□□□ -1.72
CLK3-212ENST00000563418 IGLV4-60A0A075B6I1 120 aa4.33□□□□□ -1.72
CLK3-212ENST00000563418 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.33□□□□□ -1.72
CLK3-212ENST00000563418 Q6ZRP5 223 aa4.33□□□□□ -1.72
CLK3-212ENST00000563418 MYO9AB2RTY4 2548 aa4.33□□□□□ -1.72
CLK3-212ENST00000563418 WDR87Q6ZQQ6 2873 aa4.33□□□□□ -1.72
CLK3-212ENST00000563418 CACNA1AO00555 2505 aa4.33□□□□□ -1.72
CLK3-212ENST00000563418 ZNF702PQ9H963 129 aa4.32□□□□□ -1.72
CLK3-212ENST00000563418 Q6ZSN1 163 aa4.32□□□□□ -1.72
CLK3-212ENST00000563418 EPM2AB3EWF7 344 aa4.32□□□□□ -1.72
CLK3-212ENST00000563418 FSHBP01225 129 aa4.32□□□□□ -1.72
CLK3-212ENST00000563418 A8MTW9 85 aa4.31□□□□□ -1.72
CLK3-212ENST00000563418 MIR22HGQ0VDD5 57 aa4.31□□□□□ -1.72
CLK3-212ENST00000563418 GVQW2A0A096LPI5 108 aaPredicted RBP4.31□□□□□ -1.72
CLK3-212ENST00000563418 C16orf95Q9H693 158 aa4.31□□□□□ -1.72
CLK3-212ENST00000563418 KIAA0087Q14695 138 aa4.31□□□□□ -1.72
CLK3-212ENST00000563418 LMO4P61968 165 aa4.3□□□□□ -1.72
CLK3-212ENST00000563418 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.3□□□□□ -1.72
CLK3-212ENST00000563418 IGHV4-61A0A0C4DH41 118 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms