RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 COX7A2LO14548 114 aa12.16□□□□□ -0.46
COMMD4-208ENST00000563220 DYNC2H1Q8NCM8 4307 aaKnown RBP12.16□□□□□ -0.46
COMMD4-208ENST00000563220 APLNQ9ULZ1 77 aa12.15□□□□□ -0.46
COMMD4-208ENST00000563220 CFC1BP0CG36 223 aa12.14□□□□□ -0.47
COMMD4-208ENST00000563220 CFC1P0CG37 223 aa12.14□□□□□ -0.47
COMMD4-208ENST00000563220 WFDC2Q14508 124 aa12.14□□□□□ -0.47
COMMD4-208ENST00000563220 ADAMTSL4-AS1Q5T5F5 129 aa12.14□□□□□ -0.47
COMMD4-208ENST00000563220 TRAV8-4A0A0B4J246 113 aa12.14□□□□□ -0.47
COMMD4-208ENST00000563220 TMEM238C9JI98 176 aa12.14□□□□□ -0.47
COMMD4-208ENST00000563220 RPL24P83731 157 aaKnown RBP12.14□□□□□ -0.47
COMMD4-208ENST00000563220 MIAQ16674 131 aa12.13□□□□□ -0.47
COMMD4-208ENST00000563220 APOMO95445 188 aa12.12□□□□□ -0.47
COMMD4-208ENST00000563220 KRTAP26-1Q6PEX3 210 aa12.12□□□□□ -0.47
COMMD4-208ENST00000563220 UPK3BQ9BT76 320 aa12.12□□□□□ -0.47
COMMD4-208ENST00000563220 PRO1854Q9UHT4 67 aa12.12□□□□□ -0.47
COMMD4-208ENST00000563220 MALP21145 153 aa12.11□□□□□ -0.47
COMMD4-208ENST00000563220 TRBV20-1A0A075B6N2 111 aa12.1□□□□□ -0.47
COMMD4-208ENST00000563220 A0A0B4J2C4 111 aa12.1□□□□□ -0.47
COMMD4-208ENST00000563220 J3QR89 54 aa12.1□□□□□ -0.47
COMMD4-208ENST00000563220 KIAA0087Q14695 138 aa12.1□□□□□ -0.47
COMMD4-208ENST00000563220 C6orf226Q5I0X4 101 aa12.1□□□□□ -0.47
COMMD4-208ENST00000563220 TIMM17BO60830 172 aa12.1□□□□□ -0.47
COMMD4-208ENST00000563220 HERV-K104P63124 156 aa12.1□□□□□ -0.47
COMMD4-208ENST00000563220 MUSTN1Q8IVN3 82 aa12.1□□□□□ -0.47
COMMD4-208ENST00000563220 Q8IZM0 81 aa12.1□□□□□ -0.47
COMMD4-208ENST00000563220 CSMD3Q7Z407 3707 aa12.09□□□□□ -0.47
COMMD4-208ENST00000563220 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.09□□□□□ -0.47
COMMD4-208ENST00000563220 A0A0U1RRA0 63 aa12.08□□□□□ -0.48
COMMD4-208ENST00000563220 A4D1N5 150 aa12.08□□□□□ -0.48
COMMD4-208ENST00000563220 SPANXDQ9BXN6 97 aa12.08□□□□□ -0.48
COMMD4-208ENST00000563220 SPANXCQ9NY87 97 aa12.08□□□□□ -0.48
COMMD4-208ENST00000563220 LOC107984156A0A0G2JMH3 177 aa12.08□□□□□ -0.48
COMMD4-208ENST00000563220 NUPR2A6NF83 97 aa12.08□□□□□ -0.48
COMMD4-208ENST00000563220 PRSS2P07478 247 aa12.08□□□□□ -0.48
COMMD4-208ENST00000563220 ARL17AQ8IVW1 177 aa12.08□□□□□ -0.48
COMMD4-208ENST00000563220 DAND5Q8N907 189 aa12.08□□□□□ -0.48
COMMD4-208ENST00000563220 DNAH7Q8WXX0 4024 aa12.07□□□□□ -0.48
COMMD4-208ENST00000563220 CIRBPQ14011 172 aaKnown RBP12.07□□□□□ -0.48
COMMD4-208ENST00000563220 ETDBQ3ZM63 59 aa12.07□□□□□ -0.48
COMMD4-208ENST00000563220 MEIG1Q5JSS6 88 aa12.07□□□□□ -0.48
COMMD4-208ENST00000563220 C2orf82Q6UX34 121 aa12.07□□□□□ -0.48
COMMD4-208ENST00000563220 KLK5Q9Y337 293 aaPredicted RBP12.07□□□□□ -0.48
COMMD4-208ENST00000563220 IBA57-AS1B1ANH7 110 aa12.06□□□□□ -0.48
COMMD4-208ENST00000563220 C21orf62-AS1Q17RA5 79 aa12.06□□□□□ -0.48
COMMD4-208ENST00000563220 FBN3Q75N90 2809 aa12.06□□□□□ -0.48
COMMD4-208ENST00000563220 PSMB2P49721 201 aa12.06□□□□□ -0.48
COMMD4-208ENST00000563220 PLECQ15149 4684 aaKnown RBP12.06□□□□□ -0.48
COMMD4-208ENST00000563220 EIF4EBP3O60516 100 aaPredicted RBP12.05□□□□□ -0.48
COMMD4-208ENST00000563220 NPC2P61916 151 aa12.05□□□□□ -0.48
COMMD4-208ENST00000563220 C1orf43Q9BWL3 253 aa12.05□□□□□ -0.48
COMMD4-208ENST00000563220 Q9HAA7 133 aa12.05□□□□□ -0.48
COMMD4-208ENST00000563220 IGKV2D-24A0A075B6R9 120 aa12.04□□□□□ -0.48
COMMD4-208ENST00000563220 SMCPP49901 116 aaPredicted RBP12.04□□□□□ -0.48
COMMD4-208ENST00000563220 TCL1BO95988 128 aa12.03□□□□□ -0.48
COMMD4-208ENST00000563220 CFAP161Q6P656 301 aa12.03□□□□□ -0.48
COMMD4-208ENST00000563220 C6orf223Q8N319 242 aa12.03□□□□□ -0.48
COMMD4-208ENST00000563220 LINC00526Q96FQ7 95 aa12.03□□□□□ -0.48
COMMD4-208ENST00000563220 LYSTQ99698 3801 aa12.03□□□□□ -0.48
COMMD4-208ENST00000563220 ERG28Q9UKR5 140 aa12.03□□□□□ -0.48
COMMD4-208ENST00000563220 DNAH1Q9P2D7 4330 aa12.02□□□□□ -0.48
COMMD4-208ENST00000563220 CKS1BP61024 79 aa12.02□□□□□ -0.48
COMMD4-208ENST00000563220 SPAG11BQ08648 103 aa12.02□□□□□ -0.48
COMMD4-208ENST00000563220 SFTA2Q6UW10 78 aa12.02□□□□□ -0.48
COMMD4-208ENST00000563220 UBE2DNLQ8IWF7 75 aa12.02□□□□□ -0.49
COMMD4-208ENST00000563220 IFITM1P13164 125 aa12.01□□□□□ -0.49
COMMD4-208ENST00000563220 MTURNQ8N3F0 131 aa12.01□□□□□ -0.49
COMMD4-208ENST00000563220 LINC00308Q8TCZ7 52 aa12.01□□□□□ -0.49
COMMD4-208ENST00000563220 M0QXV9 152 aa12□□□□□ -0.49
COMMD4-208ENST00000563220 CXCL5P42830 114 aa12□□□□□ -0.49
COMMD4-208ENST00000563220 SOSTDC1Q6X4U4 206 aa12□□□□□ -0.49
COMMD4-208ENST00000563220 STARD9Q9P2P6 4700 aa12□□□□□ -0.49
COMMD4-208ENST00000563220 PFN2P35080 140 aa12□□□□□ -0.49
COMMD4-208ENST00000563220 LINC00158P58513 81 aa12□□□□□ -0.49
COMMD4-208ENST00000563220 SCGB1C2P0DMR2 95 aa11.99□□□□□ -0.49
COMMD4-208ENST00000563220 C10orf25Q5T742 122 aa11.99□□□□□ -0.49
COMMD4-208ENST00000563220 MIR7-3HGQ8N6C7 128 aa11.99□□□□□ -0.49
COMMD4-208ENST00000563220 KRTAP1-5Q9BYS1 174 aa11.99□□□□□ -0.49
COMMD4-208ENST00000563220 UNQ6190/PRO20217Q6UXQ8 127 aa11.98□□□□□ -0.49
COMMD4-208ENST00000563220 C15orf56Q8N910 161 aa11.98□□□□□ -0.49
COMMD4-208ENST00000563220 TRBV30A0A0K0K1B3 111 aa11.97□□□□□ -0.49
COMMD4-208ENST00000563220 HIGD2BQ4VC39 106 aa11.97□□□□□ -0.49
COMMD4-208ENST00000563220 NTN5Q8WTR8 489 aaPredicted RBP11.97□□□□□ -0.49
COMMD4-208ENST00000563220 TENM2Q9NT68 2774 aa11.96□□□□□ -0.49
COMMD4-208ENST00000563220 C9orf116Q5BN46 136 aaPredicted RBP11.96□□□□□ -0.49
COMMD4-208ENST00000563220 CASC10Q5T4H9 136 aa11.96□□□□□ -0.49
COMMD4-208ENST00000563220 TEN1Q86WV5 123 aa11.96□□□□□ -0.49
COMMD4-208ENST00000563220 LINC01600Q96MT4 127 aa11.95□□□□□ -0.5
COMMD4-208ENST00000563220 PPDPFLQ8WWR9 84 aa11.95□□□□□ -0.5
COMMD4-208ENST00000563220 SIGMAR1Q99720 223 aa11.94□□□□□ -0.5
COMMD4-208ENST00000563220 ZNF561-AS1K7EIQ3 104 aa11.93□□□□□ -0.5
COMMD4-208ENST00000563220 SCGB1A1P11684 91 aa11.93□□□□□ -0.5
COMMD4-208ENST00000563220 RMI2Q96E14 147 aa11.93□□□□□ -0.5
COMMD4-208ENST00000563220 ATXN8Q156A1 80 aa11.92□□□□□ -0.5
COMMD4-208ENST00000563220 Q1RN00 199 aa11.92□□□□□ -0.5
COMMD4-208ENST00000563220 COPS9Q8WXC6 57 aa11.92□□□□□ -0.5
COMMD4-208ENST00000563220 COX17Q14061 63 aa11.91□□□□□ -0.5
COMMD4-208ENST00000563220 MUC7Q8TAX7 377 aa11.91□□□□□ -0.5
COMMD4-208ENST00000563220 PPDPFQ9H3Y8 114 aa11.91□□□□□ -0.5
COMMD4-208ENST00000563220 GVQW2A0A096LPI5 108 aaPredicted RBP11.91□□□□□ -0.5
COMMD4-208ENST00000563220 C6orf48Q9UBA6 75 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms