RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 UQCC3Q6UW78 93 aa6.3□□□□□ -1.4
CLK3-205ENST00000561673 KRTAP11-1Q8IUC1 163 aa6.3□□□□□ -1.4
CLK3-205ENST00000561673 KRTAP7-1Q8IUC3 87 aa6.3□□□□□ -1.4
CLK3-205ENST00000561673 FAM19A5Q7Z5A7 132 aaPredicted RBP6.29□□□□□ -1.4
CLK3-205ENST00000561673 FAM19A3Q7Z5A8 133 aa6.29□□□□□ -1.4
CLK3-205ENST00000561673 TOMM6Q96B49 74 aa6.29□□□□□ -1.4
CLK3-205ENST00000561673 TRAV9-1A0A075B6T8 112 aa6.28□□□□□ -1.4
CLK3-205ENST00000561673 NDUFC2-KCTD14E9PQ53 114 aa6.28□□□□□ -1.4
CLK3-205ENST00000561673 PRSS2P07478 247 aa6.28□□□□□ -1.4
CLK3-205ENST00000561673 G0S2P27469 103 aa6.28□□□□□ -1.4
CLK3-205ENST00000561673 PACRGQ96M98 296 aaPredicted RBP6.28□□□□□ -1.4
CLK3-205ENST00000561673 TIMM17AQ99595 171 aa6.28□□□□□ -1.4
CLK3-205ENST00000561673 IGLV7-43P04211 117 aa6.27□□□□□ -1.41
CLK3-205ENST00000561673 C6orf226Q5I0X4 101 aa6.27□□□□□ -1.41
CLK3-205ENST00000561673 PAPPA-AS1Q5QFB9 102 aa6.27□□□□□ -1.41
CLK3-205ENST00000561673 C9orf129Q5T035 196 aaKnown RBP6.27□□□□□ -1.41
CLK3-205ENST00000561673 SEC11CQ9BY50 192 aa6.27□□□□□ -1.41
CLK3-205ENST00000561673 TOMM7Q9P0U1 55 aa6.27□□□□□ -1.41
CLK3-205ENST00000561673 CDKN2A-AS1Q9UH64 79 aa6.27□□□□□ -1.41
CLK3-205ENST00000561673 RNF213Q63HN8 5207 aa6.27□□□□□ -1.41
CLK3-205ENST00000561673 M0QXV9 152 aa6.26□□□□□ -1.41
CLK3-205ENST00000561673 CKS1BP61024 79 aa6.26□□□□□ -1.41
CLK3-205ENST00000561673 HERVK_113P63121 156 aa6.26□□□□□ -1.41
CLK3-205ENST00000561673 SEC11AP67812 179 aa6.26□□□□□ -1.41
CLK3-205ENST00000561673 ERASQ7Z444 233 aa6.26□□□□□ -1.41
CLK3-205ENST00000561673 Q8IZM0 81 aa6.26□□□□□ -1.41
CLK3-205ENST00000561673 SCGB3A1Q96QR1 104 aa6.26□□□□□ -1.41
CLK3-205ENST00000561673 ALKBH7Q9BT30 221 aaPredicted RBP6.26□□□□□ -1.41
CLK3-205ENST00000561673 GNB1LQ9BYB4 327 aa6.26□□□□□ -1.41
CLK3-205ENST00000561673 LINC01546A6NGU7 62 aa6.25□□□□□ -1.41
CLK3-205ENST00000561673 S100PP25815 95 aa6.25□□□□□ -1.41
CLK3-205ENST00000561673 LINC00469Q8N7U9 141 aa6.25□□□□□ -1.41
CLK3-205ENST00000561673 DIRC1Q969H9 104 aa6.25□□□□□ -1.41
CLK3-205ENST00000561673 GEMIN7Q9H840 131 aaKnown RBP6.25□□□□□ -1.41
CLK3-205ENST00000561673 UBE2BP63146 152 aa6.24□□□□□ -1.41
CLK3-205ENST00000561673 COMMD7Q86VX2 200 aa6.24□□□□□ -1.41
CLK3-205ENST00000561673 TINCRA0A1B0GVN0 87 aa6.23□□□□□ -1.41
CLK3-205ENST00000561673 F8VRH5 84 aa6.23□□□□□ -1.41
CLK3-205ENST00000561673 H0Y9J4 135 aa6.23□□□□□ -1.41
CLK3-205ENST00000561673 C10orf91Q5T1B1 145 aa6.23□□□□□ -1.41
CLK3-205ENST00000561673 CST9LQ9H4G1 147 aa6.23□□□□□ -1.41
CLK3-205ENST00000561673 LPAP08519 4548 aa6.23□□□□□ -1.41
CLK3-205ENST00000561673 SMIM1B2RUZ4 78 aa6.22□□□□□ -1.41
CLK3-205ENST00000561673 FABP9Q0Z7S8 132 aa6.22□□□□□ -1.41
CLK3-205ENST00000561673 PRR26Q8N8Z3 221 aa6.22□□□□□ -1.41
CLK3-205ENST00000561673 XAGE1AQ9HD64 81 aa6.22□□□□□ -1.41
CLK3-205ENST00000561673 C22orf24Q9Y442 160 aa6.22□□□□□ -1.41
CLK3-205ENST00000561673 IGLV5-45A0A087WSX0 123 aa6.21□□□□□ -1.42
CLK3-205ENST00000561673 LINC01549A6NIU2 74 aa6.21□□□□□ -1.42
CLK3-205ENST00000561673 RHEBQ15382 184 aa6.21□□□□□ -1.42
CLK3-205ENST00000561673 COX19Q49B96 90 aa6.21□□□□□ -1.42
CLK3-205ENST00000561673 PDZD11Q5EBL8 140 aa6.21□□□□□ -1.42
CLK3-205ENST00000561673 FA2HQ7L5A8 372 aa6.21□□□□□ -1.42
CLK3-205ENST00000561673 RPS10P5Q9NQ39 176 aa6.21□□□□□ -1.42
CLK3-205ENST00000561673 KRTAP1-4P0C5Y4 121 aa6.2□□□□□ -1.42
CLK3-205ENST00000561673 CXCL5P42830 114 aa6.2□□□□□ -1.42
CLK3-205ENST00000561673 PMVKQ15126 192 aa6.2□□□□□ -1.42
CLK3-205ENST00000561673 COX7B2Q8TF08 81 aa6.2□□□□□ -1.42
CLK3-205ENST00000561673 CARHSP1Q9Y2V2 147 aaKnown RBP6.2□□□□□ -1.42
CLK3-205ENST00000561673 SPINK8P0C7L1 97 aa6.19□□□□□ -1.42
CLK3-205ENST00000561673 LBHQ53QV2 105 aaPredicted RBP6.19□□□□□ -1.42
CLK3-205ENST00000561673 SMCO4Q9NRQ5 59 aa6.19□□□□□ -1.42
CLK3-205ENST00000561673 ZNF861PO60384 105 aa6.18□□□□□ -1.42
CLK3-205ENST00000561673 A0A096LNJ9 63 aa6.17□□□□□ -1.42
CLK3-205ENST00000561673 NUPR1O60356 82 aa6.17□□□□□ -1.42
CLK3-205ENST00000561673 RAB5BP61020 215 aa6.17□□□□□ -1.42
CLK3-205ENST00000561673 MRPL55Q7Z7F7 128 aaKnown RBP6.17□□□□□ -1.42
CLK3-205ENST00000561673 URB1-AS1Q96HZ7 61 aa6.17□□□□□ -1.42
CLK3-205ENST00000561673 TP73-AS1Q9UF72 201 aa6.17□□□□□ -1.42
CLK3-205ENST00000561673 TRAPPC1Q9Y5R8 145 aa6.17□□□□□ -1.42
CLK3-205ENST00000561673 IGLV1-50A0A075B6I6 118 aa6.16□□□□□ -1.42
CLK3-205ENST00000561673 H3BRM9 83 aa6.16□□□□□ -1.42
CLK3-205ENST00000561673 LINC00614P0C842 121 aa6.16□□□□□ -1.42
CLK3-205ENST00000561673 IGLC3P0DOY3 106 aa6.16□□□□□ -1.42
CLK3-205ENST00000561673 C18orf32Q8TCD1 76 aa6.16□□□□□ -1.42
CLK3-205ENST00000561673 LINC00167Q96N53 147 aa6.16□□□□□ -1.42
CLK3-205ENST00000561673 RPL37AP8A6NKH3 93 aa6.15□□□□□ -1.42
CLK3-205ENST00000561673 NDUFA6P56556 154 aa6.15□□□□□ -1.42
CLK3-205ENST00000561673 PMCHL1Q16048 86 aa6.15□□□□□ -1.42
CLK3-205ENST00000561673 IGLV5-39A0A0G2JS06 123 aa6.14□□□□□ -1.43
CLK3-205ENST00000561673 BCE1O60756 84 aa6.14□□□□□ -1.43
CLK3-205ENST00000561673 APOC3P02656 99 aa6.14□□□□□ -1.43
CLK3-205ENST00000561673 IGLV5-37A0A075B6J1 123 aa6.13□□□□□ -1.43
CLK3-205ENST00000561673 GAGE10A6NGK3 116 aa6.13□□□□□ -1.43
CLK3-205ENST00000561673 ATP5LO75964 103 aa6.13□□□□□ -1.43
CLK3-205ENST00000561673 HBDP02042 147 aa6.13□□□□□ -1.43
CLK3-205ENST00000561673 ZNF22P17026 224 aaPredicted RBP6.13□□□□□ -1.43
CLK3-205ENST00000561673 PFN2P35080 140 aa6.12□□□□□ -1.43
CLK3-205ENST00000561673 RPL13AP40429 203 aaKnown RBP6.12□□□□□ -1.43
CLK3-205ENST00000561673 RPL28P46779 137 aaKnown RBP6.12□□□□□ -1.43
CLK3-205ENST00000561673 NDUFA5Q16718 116 aa6.12□□□□□ -1.43
CLK3-205ENST00000561673 BAGE3Q86Y29 109 aa6.12□□□□□ -1.43
CLK3-205ENST00000561673 C11orf86A6NJI1 115 aa6.11□□□□□ -1.43
CLK3-205ENST00000561673 SCO1O75880 301 aa6.11□□□□□ -1.43
CLK3-205ENST00000561673 SNAPINO95295 136 aa6.11□□□□□ -1.43
CLK3-205ENST00000561673 SVBPQ8N300 66 aa6.11□□□□□ -1.43
CLK3-205ENST00000561673 NKAPP1Q8N9T2 125 aa6.11□□□□□ -1.43
CLK3-205ENST00000561673 YPEL4Q96NS1 127 aa6.1□□□□□ -1.43
CLK3-205ENST00000561673 SND1-IT1Q9HBX3 110 aa6.1□□□□□ -1.43
CLK3-205ENST00000561673 ERG28Q9UKR5 140 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 1054.1 ms