RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 GCSHP23434 173 aa6.85□□□□□ -1.31
USP3-219ENST00000561326 KIAA0087Q14695 138 aa6.85□□□□□ -1.31
USP3-219ENST00000561326 COPS9Q8WXC6 57 aa6.85□□□□□ -1.31
USP3-219ENST00000561326 LINC00158P58513 81 aa6.84□□□□□ -1.31
USP3-219ENST00000561326 COX17Q14061 63 aa6.84□□□□□ -1.31
USP3-219ENST00000561326 C2orf48Q96LS8 159 aa6.84□□□□□ -1.31
USP3-219ENST00000561326 KRTAP1-5Q9BYS1 174 aa6.84□□□□□ -1.31
USP3-219ENST00000561326 VPS13DQ5THJ4 4388 aa6.84□□□□□ -1.31
USP3-219ENST00000561326 GVQW2A0A096LPI5 108 aaPredicted RBP6.83□□□□□ -1.32
USP3-219ENST00000561326 USP17L23D6RBM5 183 aa6.83□□□□□ -1.32
USP3-219ENST00000561326 M0R2N4 97 aa6.83□□□□□ -1.32
USP3-219ENST00000561326 HINT1P49773 126 aaPredicted RBP6.83□□□□□ -1.32
USP3-219ENST00000561326 PTTG1IPP53801 180 aa6.83□□□□□ -1.32
USP3-219ENST00000561326 C14orf177Q52M58 125 aa6.83□□□□□ -1.32
USP3-219ENST00000561326 C2orf82Q6UX34 121 aa6.83□□□□□ -1.32
USP3-219ENST00000561326 CEND1Q8N111 149 aa6.83□□□□□ -1.32
USP3-219ENST00000561326 NTN5Q8WTR8 489 aaPredicted RBP6.83□□□□□ -1.32
USP3-219ENST00000561326 LINC00476Q8WZB0 136 aa6.83□□□□□ -1.32
USP3-219ENST00000561326 CAMK2N2Q96S95 79 aa6.83□□□□□ -1.32
USP3-219ENST00000561326 SPANXDQ9BXN6 97 aa6.83□□□□□ -1.32
USP3-219ENST00000561326 SPANXCQ9NY87 97 aa6.83□□□□□ -1.32
USP3-219ENST00000561326 TMEM238LA0A1B0GVL6 79 aa6.82□□□□□ -1.32
USP3-219ENST00000561326 A6NJY4 79 aa6.82□□□□□ -1.32
USP3-219ENST00000561326 IFITM1P13164 125 aa6.82□□□□□ -1.32
USP3-219ENST00000561326 RPL24P83731 157 aaKnown RBP6.82□□□□□ -1.32
USP3-219ENST00000561326 HIGD2BQ4VC39 106 aa6.82□□□□□ -1.32
USP3-219ENST00000561326 C15orf56Q8N910 161 aa6.82□□□□□ -1.32
USP3-219ENST00000561326 ERG28Q9UKR5 140 aa6.82□□□□□ -1.32
USP3-219ENST00000561326 TRBV30A0A0K0K1B3 111 aa6.81□□□□□ -1.32
USP3-219ENST00000561326 A6NDN8 102 aa6.81□□□□□ -1.32
USP3-219ENST00000561326 SMIM13P0DJ93 91 aa6.81□□□□□ -1.32
USP3-219ENST00000561326 PFN2P35080 140 aa6.81□□□□□ -1.32
USP3-219ENST00000561326 PLECQ15149 4684 aaKnown RBP6.81□□□□□ -1.32
USP3-219ENST00000561326 BATFQ16520 125 aa6.81□□□□□ -1.32
USP3-219ENST00000561326 BVES-AS1Q5T3Y7 98 aa6.81□□□□□ -1.32
USP3-219ENST00000561326 UNQ6190/PRO20217Q6UXQ8 127 aa6.81□□□□□ -1.32
USP3-219ENST00000561326 C6orf223Q8N319 242 aa6.81□□□□□ -1.32
USP3-219ENST00000561326 A0A0U1RRA0 63 aa6.8□□□□□ -1.32
USP3-219ENST00000561326 SYCNQ0VAF6 134 aa6.8□□□□□ -1.32
USP3-219ENST00000561326 ADAMTSL4-AS1Q5T5F5 129 aa6.8□□□□□ -1.32
USP3-219ENST00000561326 Q6ZR54 194 aa6.8□□□□□ -1.32
USP3-219ENST00000561326 LINC00526Q96FQ7 95 aa6.8□□□□□ -1.32
USP3-219ENST00000561326 LITAFQ99732 161 aa6.8□□□□□ -1.32
USP3-219ENST00000561326 RNF151Q2KHN1 245 aa6.79□□□□□ -1.32
USP3-219ENST00000561326 LBHQ53QV2 105 aaPredicted RBP6.79□□□□□ -1.32
USP3-219ENST00000561326 C1orf134Q5TEV5 83 aa6.79□□□□□ -1.32
USP3-219ENST00000561326 MUSTN1Q8IVN3 82 aa6.79□□□□□ -1.32
USP3-219ENST00000561326 SNHG12Q9BXW3 62 aa6.79□□□□□ -1.32
USP3-219ENST00000561326 STARD9Q9P2P6 4700 aa6.78□□□□□ -1.32
USP3-219ENST00000561326 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.78□□□□□ -1.32
USP3-219ENST00000561326 COL5A1-AS1Q5SY13 56 aa6.78□□□□□ -1.32
USP3-219ENST00000561326 MIR7-3HGQ8N6C7 128 aa6.78□□□□□ -1.32
USP3-219ENST00000561326 PPDPFQ9H3Y8 114 aa6.78□□□□□ -1.32
USP3-219ENST00000561326 DNAH1Q9P2D7 4330 aa6.78□□□□□ -1.32
USP3-219ENST00000561326 LECT2O14960 151 aa6.77□□□□□ -1.33
USP3-219ENST00000561326 C10orf25Q5T742 122 aa6.77□□□□□ -1.33
USP3-219ENST00000561326 Q6ZRU5 148 aa6.77□□□□□ -1.33
USP3-219ENST00000561326 DAND5Q8N907 189 aa6.77□□□□□ -1.33
USP3-219ENST00000561326 LINC00308Q8TCZ7 52 aa6.77□□□□□ -1.33
USP3-219ENST00000561326 CARD19Q96LW7 228 aa6.77□□□□□ -1.33
USP3-219ENST00000561326 FXYD2P54710 66 aa6.76□□□□□ -1.33
USP3-219ENST00000561326 C9orf116Q5BN46 136 aaPredicted RBP6.76□□□□□ -1.33
USP3-219ENST00000561326 Q6ZRN7 208 aaPredicted RBP6.76□□□□□ -1.33
USP3-219ENST00000561326 C6orf48Q9UBA6 75 aa6.76□□□□□ -1.33
USP3-219ENST00000561326 LYSTQ99698 3801 aa6.76□□□□□ -1.33
USP3-219ENST00000561326 A4D1N5 150 aa6.75□□□□□ -1.33
USP3-219ENST00000561326 NDUFC2-KCTD14E9PQ53 114 aa6.75□□□□□ -1.33
USP3-219ENST00000561326 NPC2P61916 151 aa6.75□□□□□ -1.33
USP3-219ENST00000561326 NHP2Q9NX24 153 aaKnown RBP6.75□□□□□ -1.33
USP3-219ENST00000561326 DNAH6Q9C0G6 4158 aa6.74□□□□□ -1.33
USP3-219ENST00000561326 LRCOL1A6NCL2 159 aa6.74□□□□□ -1.33
USP3-219ENST00000561326 EREGO14944 169 aa6.74□□□□□ -1.33
USP3-219ENST00000561326 RAB37Q96AX2 223 aa6.74□□□□□ -1.33
USP3-219ENST00000561326 PKIGQ9Y2B9 76 aa6.74□□□□□ -1.33
USP3-219ENST00000561326 ALMS1Q8TCU4 4167 aa6.74□□□□□ -1.33
USP3-219ENST00000561326 LOC107984156A0A0G2JMH3 177 aa6.73□□□□□ -1.33
USP3-219ENST00000561326 CNBPP62633 177 aaKnown RBP6.73□□□□□ -1.33
USP3-219ENST00000561326 ARL17AQ8IVW1 177 aa6.73□□□□□ -1.33
USP3-219ENST00000561326 SND1-IT1Q9HBX3 110 aa6.73□□□□□ -1.33
USP3-219ENST00000561326 LOC107984640A0A0U1RRK4 108 aa6.72□□□□□ -1.33
USP3-219ENST00000561326 SLPIP03973 132 aa6.72□□□□□ -1.33
USP3-219ENST00000561326 TLX1NBP0CAT3 122 aa6.72□□□□□ -1.33
USP3-219ENST00000561326 CFC1BP0CG36 223 aa6.72□□□□□ -1.33
USP3-219ENST00000561326 CFC1P0CG37 223 aa6.72□□□□□ -1.33
USP3-219ENST00000561326 WFDC2Q14508 124 aa6.72□□□□□ -1.33
USP3-219ENST00000561326 PRO1854Q9UHT4 67 aa6.72□□□□□ -1.33
USP3-219ENST00000561326 A0A087WTM6 91 aa6.71□□□□□ -1.34
USP3-219ENST00000561326 A0A0B4J2C4 111 aa6.71□□□□□ -1.34
USP3-219ENST00000561326 A0A1B0GWB2 263 aa6.71□□□□□ -1.34
USP3-219ENST00000561326 NDUFC2O95298 119 aa6.71□□□□□ -1.34
USP3-219ENST00000561326 SOSTDC1Q6X4U4 206 aa6.71□□□□□ -1.34
USP3-219ENST00000561326 Q8N814 137 aa6.71□□□□□ -1.34
USP3-219ENST00000561326 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.7□□□□□ -1.34
USP3-219ENST00000561326 TRAV13-2A0A0B4J235 113 aa6.7□□□□□ -1.34
USP3-219ENST00000561326 LCE6AA0A183 80 aa6.7□□□□□ -1.34
USP3-219ENST00000561326 EIF4EBP3O60516 100 aaPredicted RBP6.7□□□□□ -1.34
USP3-219ENST00000561326 RPL18AQ02543 176 aaKnown RBP6.69□□□□□ -1.34
USP3-219ENST00000561326 GAGE2EQ4V326 116 aa6.69□□□□□ -1.34
USP3-219ENST00000561326 GAGE2DQ9UEU5 116 aa6.69□□□□□ -1.34
USP3-219ENST00000561326 K7ERJ3 54 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms