RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 TM2D3Q9BRN9 247 aa3.76□□□□□ -1.81
VPS13C-209ENST00000560637 MIAQ16674 131 aa3.76□□□□□ -1.81
VPS13C-209ENST00000560637 IGIPA6NJ69 53 aa3.75□□□□□ -1.81
VPS13C-209ENST00000560637 FABP2P12104 132 aa3.75□□□□□ -1.81
VPS13C-209ENST00000560637 RNF151Q2KHN1 245 aa3.75□□□□□ -1.81
VPS13C-209ENST00000560637 TTC32Q5I0X7 151 aa3.75□□□□□ -1.81
VPS13C-209ENST00000560637 MAPKAPK5-AS1Q8N8E1 139 aa3.75□□□□□ -1.81
VPS13C-209ENST00000560637 IGHV1-58A0A0C4DH39 117 aa3.75□□□□□ -1.81
VPS13C-209ENST00000560637 A0A1B0GV90 55 aa3.75□□□□□ -1.81
VPS13C-209ENST00000560637 USP17L23D6RBM5 183 aa3.75□□□□□ -1.81
VPS13C-209ENST00000560637 FAM229AH3BQW9 127 aa3.75□□□□□ -1.81
VPS13C-209ENST00000560637 COX8AP10176 69 aa3.75□□□□□ -1.81
VPS13C-209ENST00000560637 MUSTN1Q8IVN3 82 aa3.75□□□□□ -1.81
VPS13C-209ENST00000560637 DEFB105AQ8NG35 78 aa3.75□□□□□ -1.81
VPS13C-209ENST00000560637 ERG28Q9UKR5 140 aa3.75□□□□□ -1.81
VPS13C-209ENST00000560637 IGKV2-28A0A075B6P5 120 aa3.75□□□□□ -1.81
VPS13C-209ENST00000560637 IGKV2D-28P01615 120 aa3.75□□□□□ -1.81
VPS13C-209ENST00000560637 SYCNQ0VAF6 134 aa3.75□□□□□ -1.81
VPS13C-209ENST00000560637 NFE4Q86UQ8 179 aa3.75□□□□□ -1.81
VPS13C-209ENST00000560637 SND1-IT1Q9HBX3 110 aa3.75□□□□□ -1.81
VPS13C-209ENST00000560637 A0A096LNI7 61 aa3.74□□□□□ -1.81
VPS13C-209ENST00000560637 HSD52Q0P140 79 aa3.74□□□□□ -1.81
VPS13C-209ENST00000560637 CD164L2Q6UWJ8 174 aa3.74□□□□□ -1.81
VPS13C-209ENST00000560637 DNAH10OSP0CZ25 163 aa3.74□□□□□ -1.81
VPS13C-209ENST00000560637 UBE2D1P51668 147 aa3.74□□□□□ -1.81
VPS13C-209ENST00000560637 C1orf134Q5TEV5 83 aa3.74□□□□□ -1.81
VPS13C-209ENST00000560637 TRAV12-1A0A0B4J245 112 aa3.74□□□□□ -1.81
VPS13C-209ENST00000560637 A8MTW9 85 aa3.74□□□□□ -1.81
VPS13C-209ENST00000560637 RPL13AP40429 203 aaKnown RBP3.74□□□□□ -1.81
VPS13C-209ENST00000560637 COPS9Q8WXC6 57 aa3.74□□□□□ -1.81
VPS13C-209ENST00000560637 CARD19Q96LW7 228 aa3.74□□□□□ -1.81
VPS13C-209ENST00000560637 TINCRA0A1B0GVN0 87 aa3.73□□□□□ -1.81
VPS13C-209ENST00000560637 RPL37AP8A6NKH3 93 aa3.73□□□□□ -1.81
VPS13C-209ENST00000560637 E9PLD3 99 aa3.73□□□□□ -1.81
VPS13C-209ENST00000560637 PRR3P79522 188 aaKnown RBP3.73□□□□□ -1.81
VPS13C-209ENST00000560637 A0A087WZ39 114 aa3.73□□□□□ -1.81
VPS13C-209ENST00000560637 FXYD2P54710 66 aa3.73□□□□□ -1.81
VPS13C-209ENST00000560637 ZNF575Q86XF7 245 aa3.73□□□□□ -1.81
VPS13C-209ENST00000560637 SPCS1Q9Y6A9 102 aa3.73□□□□□ -1.81
VPS13C-209ENST00000560637 SLC25A20O43772 301 aa3.73□□□□□ -1.81
VPS13C-209ENST00000560637 HIGD2AQ9BW72 106 aa3.73□□□□□ -1.81
VPS13C-209ENST00000560637 ANK3Q12955 4377 aaKnown RBP3.72□□□□□ -1.81
VPS13C-209ENST00000560637 TRAV8-4A0A0B4J246 113 aa3.72□□□□□ -1.81
VPS13C-209ENST00000560637 A0A0J9YXY3 114 aa3.72□□□□□ -1.81
VPS13C-209ENST00000560637 TSPEAR-AS2P59090 65 aa3.72□□□□□ -1.81
VPS13C-209ENST00000560637 PYGO1Q9Y3Y4 419 aa3.72□□□□□ -1.81
VPS13C-209ENST00000560637 TMEM223A0PJW6 202 aa3.72□□□□□ -1.81
VPS13C-209ENST00000560637 F8WDY8 70 aa3.72□□□□□ -1.81
VPS13C-209ENST00000560637 RPL32P62910 135 aaKnown RBP3.72□□□□□ -1.81
VPS13C-209ENST00000560637 LYRM7Q5U5X0 104 aa3.72□□□□□ -1.81
VPS13C-209ENST00000560637 SMIM1B2RUZ4 78 aa3.71□□□□□ -1.82
VPS13C-209ENST00000560637 COX11Q9Y6N1 276 aa3.71□□□□□ -1.82
VPS13C-209ENST00000560637 BVES-AS1Q5T3Y7 98 aa3.71□□□□□ -1.82
VPS13C-209ENST00000560637 CASC10Q5T4H9 136 aa3.71□□□□□ -1.82
VPS13C-209ENST00000560637 GTF2H5Q6ZYL4 71 aa3.71□□□□□ -1.82
VPS13C-209ENST00000560637 SNHG12Q9BXW3 62 aa3.71□□□□□ -1.82
VPS13C-209ENST00000560637 LAMTOR3Q9UHA4 124 aa3.71□□□□□ -1.82
VPS13C-209ENST00000560637 IGLV5-52A0A0A0MRZ9 124 aa3.71□□□□□ -1.82
VPS13C-209ENST00000560637 NBDYA0A0U1RRE5 68 aa3.71□□□□□ -1.82
VPS13C-209ENST00000560637 ETDCA0A1B0GVM5 59 aa3.7□□□□□ -1.82
VPS13C-209ENST00000560637 A0A1B0GWB2 263 aa3.7□□□□□ -1.82
VPS13C-209ENST00000560637 H7C423 109 aa3.7□□□□□ -1.82
VPS13C-209ENST00000560637 ENHOQ6UWT2 76 aa3.7□□□□□ -1.82
VPS13C-209ENST00000560637 Q6ZRU5 148 aa3.7□□□□□ -1.82
VPS13C-209ENST00000560637 MRPS16Q9Y3D3 137 aaKnown RBP3.7□□□□□ -1.82
VPS13C-209ENST00000560637 WIPF1O43516 503 aa3.7□□□□□ -1.82
VPS13C-209ENST00000560637 MRPS36P82909 103 aaKnown RBP3.7□□□□□ -1.82
VPS13C-209ENST00000560637 C10orf25Q5T742 122 aa3.7□□□□□ -1.82
VPS13C-209ENST00000560637 CEND1Q8N111 149 aa3.7□□□□□ -1.82
VPS13C-209ENST00000560637 CHTF8P0CG12 524 aa3.69□□□□□ -1.82
VPS13C-209ENST00000560637 UBE2AP49459 152 aa3.69□□□□□ -1.82
VPS13C-209ENST00000560637 HERV-K104P63124 156 aa3.69□□□□□ -1.82
VPS13C-209ENST00000560637 LINC01556Q5JQF7 62 aa3.69□□□□□ -1.82
VPS13C-209ENST00000560637 UFSP1Q6NVU6 142 aa3.69□□□□□ -1.82
VPS13C-209ENST00000560637 MRPL52Q86TS9 123 aaKnown RBP3.69□□□□□ -1.82
VPS13C-209ENST00000560637 TAL2Q16559 108 aa3.69□□□□□ -1.82
VPS13C-209ENST00000560637 PPDPFQ9H3Y8 114 aa3.69□□□□□ -1.82
VPS13C-209ENST00000560637 PRO1854Q9UHT4 67 aa3.69□□□□□ -1.82
VPS13C-209ENST00000560637 A0A1B0GUV1 79 aa3.69□□□□□ -1.82
VPS13C-209ENST00000560637 PCP4P48539 62 aa3.69□□□□□ -1.82
VPS13C-209ENST00000560637 C14orf177Q52M58 125 aa3.69□□□□□ -1.82
VPS13C-209ENST00000560637 AMELXQ99217 191 aa3.69□□□□□ -1.82
VPS13C-209ENST00000560637 C9JAW5 83 aa3.68□□□□□ -1.82
VPS13C-209ENST00000560637 TSPAN13O95857 204 aa3.68□□□□□ -1.82
VPS13C-209ENST00000560637 PTH2Q96A98 100 aa3.68□□□□□ -1.82
VPS13C-209ENST00000560637 SRRM2Q9UQ35 2752 aaKnown RBP3.68□□□□□ -1.82
VPS13C-209ENST00000560637 DMBT1Q9UGM3 2413 aaPredicted RBP3.68□□□□□ -1.82
VPS13C-209ENST00000560637 IGHV3OR16-9A0A0B4J2B5 98 aa3.68□□□□□ -1.82
VPS13C-209ENST00000560637 CXCL5P42830 114 aa3.68□□□□□ -1.82
VPS13C-209ENST00000560637 CLEC2BQ92478 149 aa3.68□□□□□ -1.82
VPS13C-209ENST00000560637 H3BMG7 143 aa3.67□□□□□ -1.82
VPS13C-209ENST00000560637 ADAMTSL4-AS1Q5T5F5 129 aa3.67□□□□□ -1.82
VPS13C-209ENST00000560637 SERTAD4-AS1Q5TG53 156 aa3.67□□□□□ -1.82
VPS13C-209ENST00000560637 FAM19A1Q7Z5A9 133 aa3.67□□□□□ -1.82
VPS13C-209ENST00000560637 LINC00308Q8TCZ7 52 aa3.67□□□□□ -1.82
VPS13C-209ENST00000560637 TMEM126AQ9H061 195 aa3.67□□□□□ -1.82
VPS13C-209ENST00000560637 APLNQ9ULZ1 77 aa3.67□□□□□ -1.82
VPS13C-209ENST00000560637 SLPIP03973 132 aa3.67□□□□□ -1.82
VPS13C-209ENST00000560637 CFC1BP0CG36 223 aa3.66□□□□□ -1.82
VPS13C-209ENST00000560637 CFC1P0CG37 223 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 119.8 ms