RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 NABP2Q9BQ15 211 aa2.58□□□□□ -2
PRPF39-209ENST00000556353 FAM103A1Q9BTL3 118 aaKnown RBP2.58□□□□□ -2
PRPF39-209ENST00000556353 LSM2Q9Y333 95 aaKnown RBP2.58□□□□□ -2
PRPF39-209ENST00000556353 MYCBP2O75592 4640 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 C3orf84H3BNL1 204 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 TMEM256-PLSCR3K7ERE1 68 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 CREBL2O60519 120 aaPredicted RBP2.57□□□□□ -2
PRPF39-209ENST00000556353 TCL1BO95988 128 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 IGLV1-51P01701 117 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 IGLV2-23P01705 113 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 IGKCP01834 107 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 HLA-DQA1P01909 254 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 HBDP02042 147 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 ZNF138P52744 262 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 SNRPD3P62318 126 aaKnown RBP2.57□□□□□ -2
PRPF39-209ENST00000556353 RPL23P62829 140 aaKnown RBP2.57□□□□□ -2
PRPF39-209ENST00000556353 CCL20P78556 96 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 C1orf100Q5SVJ3 147 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 C6orf201Q7Z4U5 140 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 SPATA12Q7Z6I5 190 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 PRNTQ86SH4 94 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 SLC25A29Q8N8R3 303 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 NKAPP1Q8N9T2 125 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 TIMM17AQ99595 171 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 WFDC10AQ9H1F0 79 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 LINC00588Q9Y4M8 146 aa2.57□□□□□ -2
PRPF39-209ENST00000556353 FAT1Q14517 4588 aa2.56□□□□□ -2
PRPF39-209ENST00000556353 UBE2L5PA0A1B0GUS4 154 aa2.56□□□□□ -2
PRPF39-209ENST00000556353 TMEM14DPA8MWL7 114 aa2.56□□□□□ -2
PRPF39-209ENST00000556353 C11orf94C9JXX5 98 aa2.56□□□□□ -2
PRPF39-209ENST00000556353 LTAP01374 205 aa2.56□□□□□ -2
PRPF39-209ENST00000556353 IGKV1-5P01602 117 aa2.56□□□□□ -2
PRPF39-209ENST00000556353 SMIM13P0DJ93 91 aa2.56□□□□□ -2
PRPF39-209ENST00000556353 APELAP0DMC3 54 aa2.56□□□□□ -2
PRPF39-209ENST00000556353 UBE2L3P68036 154 aaKnown RBP2.56□□□□□ -2
PRPF39-209ENST00000556353 DEFB116Q30KQ4 102 aa2.56□□□□□ -2
PRPF39-209ENST00000556353 ORMDL2Q53FV1 153 aa2.56□□□□□ -2
PRPF39-209ENST00000556353 EBLN2Q6P2I7 272 aa2.56□□□□□ -2
PRPF39-209ENST00000556353 FP248Q71RG6 208 aaPredicted RBP2.56□□□□□ -2
PRPF39-209ENST00000556353 TSKUQ8WUA8 353 aa2.56□□□□□ -2
PRPF39-209ENST00000556353 DIRC1Q969H9 104 aa2.56□□□□□ -2
PRPF39-209ENST00000556353 DSCR8Q96T75 97 aa2.56□□□□□ -2
PRPF39-209ENST00000556353 DNAH8Q96JB1 4490 aa2.56□□□□□ -2
PRPF39-209ENST00000556353 SRRM2Q9UQ35 2752 aaKnown RBP2.55□□□□□ -2
PRPF39-209ENST00000556353 FXYD6-FXYD2A0A087WZ82 144 aa2.55□□□□□ -2
PRPF39-209ENST00000556353 TRBV6-7A0A0A0MS04 114 aa2.55□□□□□ -2
PRPF39-209ENST00000556353 INS-IGF2F8WCM5 200 aa2.55□□□□□ -2
PRPF39-209ENST00000556353 PRH1P02810 166 aa2.55□□□□□ -2
PRPF39-209ENST00000556353 CD7P09564 240 aa2.55□□□□□ -2
PRPF39-209ENST00000556353 S100A4P26447 101 aaKnown RBP2.55□□□□□ -2
PRPF39-209ENST00000556353 FAUP35544 74 aaKnown RBP2.55□□□□□ -2
PRPF39-209ENST00000556353 C10orf55Q5SWW7 151 aa2.55□□□□□ -2
PRPF39-209ENST00000556353 CFAP126Q5VTH2 177 aa2.55□□□□□ -2
PRPF39-209ENST00000556353 LINC00322Q6ZN03 302 aaPredicted RBP2.55□□□□□ -2
PRPF39-209ENST00000556353 C7orf65Q6ZTY9 151 aa2.55□□□□□ -2
PRPF39-209ENST00000556353 SCXQ7RTU7 201 aa2.55□□□□□ -2
PRPF39-209ENST00000556353 C5orf38Q86SI9 138 aa2.55□□□□□ -2
PRPF39-209ENST00000556353 GPHB5Q86YW7 130 aa2.55□□□□□ -2
PRPF39-209ENST00000556353 FAM213BQ8TBF2 198 aa2.55□□□□□ -2
PRPF39-209ENST00000556353 ARHGAP5-AS1Q96IT6 56 aa2.55□□□□□ -2
PRPF39-209ENST00000556353 TMEM243Q9BU79 118 aa2.55□□□□□ -2
PRPF39-209ENST00000556353 FXYD6Q9H0Q3 95 aa2.55□□□□□ -2
PRPF39-209ENST00000556353 ZNF492Q9P255 531 aa2.55□□□□□ -2
PRPF39-209ENST00000556353 TP73-AS1Q9UF72 201 aa2.55□□□□□ -2
PRPF39-209ENST00000556353 HHLA3Q9XRX5 114 aa2.55□□□□□ -2
PRPF39-209ENST00000556353 KLK5Q9Y337 293 aaPredicted RBP2.55□□□□□ -2
PRPF39-209ENST00000556353 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.54□□□□□ -2
PRPF39-209ENST00000556353 C9JCJ5 164 aa2.54□□□□□ -2
PRPF39-209ENST00000556353 E7EUB6 86 aa2.54□□□□□ -2
PRPF39-209ENST00000556353 TRGV3P03979 118 aa2.54□□□□□ -2
PRPF39-209ENST00000556353 PRM2P04554 102 aa2.54□□□□□ -2
PRPF39-209ENST00000556353 ACYP1P07311 99 aa2.54□□□□□ -2
PRPF39-209ENST00000556353 KRTDAPP60985 99 aa2.54□□□□□ -2
PRPF39-209ENST00000556353 HIST1H4AP62805 103 aaKnown RBP2.54□□□□□ -2
PRPF39-209ENST00000556353 LINC01554Q52M75 96 aa2.54□□□□□ -2
PRPF39-209ENST00000556353 MIC13Q5XKP0 118 aa2.54□□□□□ -2
PRPF39-209ENST00000556353 TMEM136Q6ZRR5 245 aa2.54□□□□□ -2
PRPF39-209ENST00000556353 SERP2Q8N6R1 65 aa2.54□□□□□ -2
PRPF39-209ENST00000556353 TRGV9Q99603 122 aa2.54□□□□□ -2
PRPF39-209ENST00000556353 UPK3BQ9BT76 320 aa2.54□□□□□ -2
PRPF39-209ENST00000556353 CST11Q9H112 138 aa2.54□□□□□ -2
PRPF39-209ENST00000556353 F11RQ9Y624 299 aaKnown RBP2.54□□□□□ -2
PRPF39-209ENST00000556353 LY96Q9Y6Y9 160 aa2.54□□□□□ -2
PRPF39-209ENST00000556353 TRAV2A0A0B4J234 112 aa2.53□□□□□ -2
PRPF39-209ENST00000556353 COX8AP10176 69 aa2.53□□□□□ -2
PRPF39-209ENST00000556353 PTHLHP12272 177 aa2.53□□□□□ -2
PRPF39-209ENST00000556353 RNASE4P34096 147 aaKnown RBP2.53□□□□□ -2
PRPF39-209ENST00000556353 FXYD3Q14802 87 aa2.53□□□□□ -2
PRPF39-209ENST00000556353 RBMY1FQ15415 496 aaKnown RBP2.53□□□□□ -2
PRPF39-209ENST00000556353 ASB16-AS1Q495Z4 193 aa2.53□□□□□ -2
PRPF39-209ENST00000556353 ATP11AUNQ6ZP68 121 aa2.53□□□□□ -2
PRPF39-209ENST00000556353 PDPNQ86YL7 162 aa2.53□□□□□ -2
PRPF39-209ENST00000556353 RMI2Q96E14 147 aa2.53□□□□□ -2
PRPF39-209ENST00000556353 hADV29S1A0JD25 119 aa2.52□□□□□ -2.01
PRPF39-209ENST00000556353 IBA57-AS1B1ANH7 110 aa2.52□□□□□ -2.01
PRPF39-209ENST00000556353 H3BUA1 57 aa2.52□□□□□ -2.01
PRPF39-209ENST00000556353 NDUFC1O43677 76 aa2.52□□□□□ -2.01
PRPF39-209ENST00000556353 NUPR1O60356 82 aa2.52□□□□□ -2.01
PRPF39-209ENST00000556353 BCE1O60756 84 aa2.52□□□□□ -2.01
PRPF39-209ENST00000556353 SAA1P0DJI8 122 aaPredicted RBP2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms