RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 AKAP9Q99996 3911 aa-0.54□□□□□ -2.5
SCFD1-218ENST00000556256 POLA1P09884 1462 aaPredicted RBP-0.54□□□□□ -2.5
SCFD1-218ENST00000556256 IQSEC2Q5JU85 1478 aa-0.54□□□□□ -2.5
SCFD1-218ENST00000556256 TET3O43151 1660 aa-0.55□□□□□ -2.5
SCFD1-218ENST00000556256 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.55□□□□□ -2.5
SCFD1-218ENST00000556256 TACC2O95359 2948 aa-0.55□□□□□ -2.5
SCFD1-218ENST00000556256 LINC00959A0A1B0GUT2 108 aa-0.55□□□□□ -2.5
SCFD1-218ENST00000556256 EFCAB10A6NFE3 127 aa-0.55□□□□□ -2.5
SCFD1-218ENST00000556256 DLEU1O43261 78 aa-0.55□□□□□ -2.5
SCFD1-218ENST00000556256 WHAMMP3Q1A5X7 153 aa-0.55□□□□□ -2.5
SCFD1-218ENST00000556256 FAM223AQ8IWN6 122 aa-0.55□□□□□ -2.5
SCFD1-218ENST00000556256 ARL2-SNX15V9GYD0 113 aa-0.55□□□□□ -2.5
SCFD1-218ENST00000556256 MYOM2P54296 1465 aa-0.55□□□□□ -2.5
SCFD1-218ENST00000556256 MAGI1Q96QZ7 1491 aaPredicted RBP-0.55□□□□□ -2.5
SCFD1-218ENST00000556256 HTTP42858 3142 aa-0.55□□□□□ -2.5
SCFD1-218ENST00000556256 DNAH3Q8TD57 4116 aa-0.56□□□□□ -2.5
SCFD1-218ENST00000556256 PDCD11Q14690 1871 aaKnown RBP-0.56□□□□□ -2.5
SCFD1-218ENST00000556256 TRBV7-4A0A0J9YYF1 115 aa-0.56□□□□□ -2.5
SCFD1-218ENST00000556256 A0A1B0GV90 55 aa-0.56□□□□□ -2.5
SCFD1-218ENST00000556256 SPINK4O60575 86 aa-0.56□□□□□ -2.5
SCFD1-218ENST00000556256 SPRR2AP35326 72 aa-0.56□□□□□ -2.5
SCFD1-218ENST00000556256 ATP5EP56381 51 aaPredicted RBP-0.56□□□□□ -2.5
SCFD1-218ENST00000556256 FAIMQ9NVQ4 179 aa-0.56□□□□□ -2.5
SCFD1-218ENST00000556256 EHBP1L1Q8N3D4 1523 aa-0.56□□□□□ -2.5
SCFD1-218ENST00000556256 PAPPA2Q9BXP8 1791 aa-0.56□□□□□ -2.5
SCFD1-218ENST00000556256 MARF1Q9Y4F3 1742 aaKnown RBP-0.56□□□□□ -2.5
SCFD1-218ENST00000556256 SCN7AQ01118 1682 aa-0.56□□□□□ -2.5
SCFD1-218ENST00000556256 KIAA0556O60303 1618 aa-0.56□□□□□ -2.5
SCFD1-218ENST00000556256 ZZEF1O43149 2961 aa-0.57□□□□□ -2.5
SCFD1-218ENST00000556256 MUC17Q685J3 4493 aa-0.57□□□□□ -2.5
SCFD1-218ENST00000556256 SONP18583 2426 aaKnown RBP-0.57□□□□□ -2.5
SCFD1-218ENST00000556256 FAM24AA6NFZ4 105 aa-0.57□□□□□ -2.5
SCFD1-218ENST00000556256 F6UZH7 168 aa-0.57□□□□□ -2.5
SCFD1-218ENST00000556256 SPRR2EP22531 72 aa-0.57□□□□□ -2.5
SCFD1-218ENST00000556256 UBE2D3P61077 147 aa-0.57□□□□□ -2.5
SCFD1-218ENST00000556256 GNG11P61952 73 aa-0.57□□□□□ -2.5
SCFD1-218ENST00000556256 UBE2D2P62837 147 aa-0.57□□□□□ -2.5
SCFD1-218ENST00000556256 LCN9Q8WX39 176 aa-0.57□□□□□ -2.5
SCFD1-218ENST00000556256 CRIPTQ9P021 101 aa-0.57□□□□□ -2.5
SCFD1-218ENST00000556256 APLNQ9ULZ1 77 aa-0.57□□□□□ -2.5
SCFD1-218ENST00000556256 SCAPERQ9BY12 1400 aa-0.57□□□□□ -2.5
SCFD1-218ENST00000556256 TNRC18O15417 2968 aaPredicted RBP-0.57□□□□□ -2.5
SCFD1-218ENST00000556256 NALCNQ8IZF0 1738 aa-0.58□□□□□ -2.5
SCFD1-218ENST00000556256 Q0VG73 95 aa-0.58□□□□□ -2.5
SCFD1-218ENST00000556256 CUL7Q14999 1698 aa-0.59□□□□□ -2.5
SCFD1-218ENST00000556256 ADGRL2O95490 1459 aa-0.59□□□□□ -2.5
SCFD1-218ENST00000556256 USP9YO00507 2555 aaPredicted RBP-0.59□□□□□ -2.5
SCFD1-218ENST00000556256 CORTO00230 105 aa-0.59□□□□□ -2.5
SCFD1-218ENST00000556256 SNAPC5O75971 98 aa-0.59□□□□□ -2.5
SCFD1-218ENST00000556256 MT4P47944 62 aa-0.59□□□□□ -2.5
SCFD1-218ENST00000556256 UBA52P62987 128 aaKnown RBP-0.59□□□□□ -2.5
SCFD1-218ENST00000556256 SFTA2Q6UW10 78 aa-0.59□□□□□ -2.5
SCFD1-218ENST00000556256 LINC01600Q96MT4 127 aa-0.59□□□□□ -2.5
SCFD1-218ENST00000556256 NUP188Q5SRE5 1749 aa-0.59□□□□□ -2.5
SCFD1-218ENST00000556256 PKHD1L1Q86WI1 4243 aa-0.59□□□□□ -2.5
SCFD1-218ENST00000556256 NBEAL2Q6ZNJ1 2754 aa-0.59□□□□□ -2.5
SCFD1-218ENST00000556256 AKAP13Q12802 2813 aa-0.6□□□□□ -2.5
SCFD1-218ENST00000556256 MRC2Q9UBG0 1479 aa-0.6□□□□□ -2.5
SCFD1-218ENST00000556256 TRANK1O15050 2925 aa-0.6□□□□□ -2.51
SCFD1-218ENST00000556256 PDE4DIPQ5VU43 2346 aa-0.6□□□□□ -2.51
SCFD1-218ENST00000556256 CUBNO60494 3623 aa-0.6□□□□□ -2.51
SCFD1-218ENST00000556256 DIP2CQ9Y2E4 1556 aa-0.6□□□□□ -2.51
SCFD1-218ENST00000556256 CPSF4LA6NMK7 179 aaKnown RBP-0.6□□□□□ -2.51
SCFD1-218ENST00000556256 GNG4P50150 75 aa-0.6□□□□□ -2.51
SCFD1-218ENST00000556256 DEFB135Q30KP9 77 aa-0.6□□□□□ -2.51
SCFD1-218ENST00000556256 FDCSPQ8NFU4 85 aa-0.6□□□□□ -2.51
SCFD1-218ENST00000556256 MANBALQ9NQG1 85 aa-0.6□□□□□ -2.51
SCFD1-218ENST00000556256 APOBP04114 4563 aaKnown RBP-0.6□□□□□ -2.51
SCFD1-218ENST00000556256 C1orf167Q5SNV9 1468 aa-0.61□□□□□ -2.51
SCFD1-218ENST00000556256 DMXL1Q9Y485 3027 aa-0.61□□□□□ -2.51
SCFD1-218ENST00000556256 HECTD1Q9ULT8 2610 aa-0.61□□□□□ -2.51
SCFD1-218ENST00000556256 FAM223BA6NKX1 122 aa-0.61□□□□□ -2.51
SCFD1-218ENST00000556256 SYS1-DBNDD2H3BUS1 97 aa-0.61□□□□□ -2.51
SCFD1-218ENST00000556256 H1FX-AS1Q4G0G2 97 aa-0.61□□□□□ -2.51
SCFD1-218ENST00000556256 ITPR3Q14573 2671 aa-0.61□□□□□ -2.51
SCFD1-218ENST00000556256 FASNP49327 2511 aaKnown RBP-0.61□□□□□ -2.51
SCFD1-218ENST00000556256 DNAH11Q96DT5 4516 aa-0.61□□□□□ -2.51
SCFD1-218ENST00000556256 XRN1Q8IZH2 1706 aaKnown RBP-0.61□□□□□ -2.51
SCFD1-218ENST00000556256 H3BQ15 152 aa-0.62□□□□□ -2.51
SCFD1-218ENST00000556256 COX6CP09669 75 aa-0.62□□□□□ -2.51
SCFD1-218ENST00000556256 PPP3R1P63098 170 aa-0.62□□□□□ -2.51
SCFD1-218ENST00000556256 PRO1933Q9H354 126 aa-0.62□□□□□ -2.51
SCFD1-218ENST00000556256 PRO1854Q9UHT4 67 aa-0.62□□□□□ -2.51
SCFD1-218ENST00000556256 A0A0G2JMZ2 1700 aa-0.62□□□□□ -2.51
SCFD1-218ENST00000556256 NLRP1Q9C000 1473 aa-0.62□□□□□ -2.51
SCFD1-218ENST00000556256 SETBP1Q9Y6X0 1596 aa-0.62□□□□□ -2.51
SCFD1-218ENST00000556256 DSPP15924 2871 aaKnown RBP-0.63□□□□□ -2.51
SCFD1-218ENST00000556256 LAMA1P25391 3075 aa-0.63□□□□□ -2.51
SCFD1-218ENST00000556256 NAP1L6A6NFF2 107 aa-0.63□□□□□ -2.51
SCFD1-218ENST00000556256 KALRNO60229 2985 aa-0.63□□□□□ -2.51
SCFD1-218ENST00000556256 COX8AP10176 69 aa-0.63□□□□□ -2.51
SCFD1-218ENST00000556256 DEFB112Q30KQ8 113 aa-0.63□□□□□ -2.51
SCFD1-218ENST00000556256 LELP1Q5T871 98 aa-0.63□□□□□ -2.51
SCFD1-218ENST00000556256 SVBPQ8N300 66 aa-0.63□□□□□ -2.51
SCFD1-218ENST00000556256 USMG5Q96IX5 58 aa-0.63□□□□□ -2.51
SCFD1-218ENST00000556256 C2orf88Q9BSF0 95 aa-0.63□□□□□ -2.51
SCFD1-218ENST00000556256 LINC00846Q9NV44 126 aa-0.63□□□□□ -2.51
SCFD1-218ENST00000556256 COL4A6Q14031 1691 aa-0.63□□□□□ -2.51
SCFD1-218ENST00000556256 COL14A1Q05707 1796 aaKnown RBP-0.63□□□□□ -2.51
SCFD1-218ENST00000556256 MYO18BQ8IUG5 2567 aa-0.64□□□□□ -2.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms