RNA–Protein interactions for RNA: ENST00000556220.5

ATXN3-236, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-236ENST00000556220 RAB5BP61020 215 aa4.09□□□□□ -1.75
ATXN3-236ENST00000556220 RIGQ13278 110 aa4.09□□□□□ -1.75
ATXN3-236ENST00000556220 C1orf137Q5JT78 98 aa4.09□□□□□ -1.75
ATXN3-236ENST00000556220 TP73-AS1Q9UF72 201 aa4.09□□□□□ -1.75
ATXN3-236ENST00000556220 KRTAP1-4P0C5Y4 121 aa4.08□□□□□ -1.76
ATXN3-236ENST00000556220 ZNF56Q15929 161 aa4.08□□□□□ -1.76
ATXN3-236ENST00000556220 ZC2HC1BQ5TFG8 222 aa4.08□□□□□ -1.76
ATXN3-236ENST00000556220 PRELID3AQ96N28 172 aa4.08□□□□□ -1.76
ATXN3-236ENST00000556220 H0Y9J4 135 aa4.07□□□□□ -1.76
ATXN3-236ENST00000556220 IGLV7-43P04211 117 aa4.07□□□□□ -1.76
ATXN3-236ENST00000556220 RPL13AP40429 203 aaKnown RBP4.07□□□□□ -1.76
ATXN3-236ENST00000556220 TRBV6-5A0A0K0K1A5 114 aa4.06□□□□□ -1.76
ATXN3-236ENST00000556220 LOC389332A0A1B0GUA5 103 aa4.06□□□□□ -1.76
ATXN3-236ENST00000556220 A0A1B0GW15 77 aa4.06□□□□□ -1.76
ATXN3-236ENST00000556220 TCAPO15273 167 aa4.06□□□□□ -1.76
ATXN3-236ENST00000556220 TSPAN13O95857 204 aa4.06□□□□□ -1.76
ATXN3-236ENST00000556220 MGPP08493 103 aa4.06□□□□□ -1.76
ATXN3-236ENST00000556220 FABP4P15090 132 aa4.06□□□□□ -1.76
ATXN3-236ENST00000556220 AMTP48728 403 aa4.06□□□□□ -1.76
ATXN3-236ENST00000556220 UBE2D1P51668 147 aa4.06□□□□□ -1.76
ATXN3-236ENST00000556220 LINC01547P58512 204 aaPredicted RBP4.06□□□□□ -1.76
ATXN3-236ENST00000556220 SPANXN1Q5VSR9 72 aa4.06□□□□□ -1.76
ATXN3-236ENST00000556220 OR10D4PQ8NGN7 298 aa4.06□□□□□ -1.76
ATXN3-236ENST00000556220 OPRPNQ99935 248 aaPredicted RBP4.06□□□□□ -1.76
ATXN3-236ENST00000556220 TMEM243Q9BU79 118 aa4.06□□□□□ -1.76
ATXN3-236ENST00000556220 SMIM2Q9BVW6 85 aa4.06□□□□□ -1.76
ATXN3-236ENST00000556220 C3orf79P0CE67 100 aa4.05□□□□□ -1.76
ATXN3-236ENST00000556220 PMCHP20382 165 aa4.05□□□□□ -1.76
ATXN3-236ENST00000556220 RPL39P62891 51 aaKnown RBP4.05□□□□□ -1.76
ATXN3-236ENST00000556220 GAGE2BQ13066 116 aa4.05□□□□□ -1.76
ATXN3-236ENST00000556220 COX19Q49B96 90 aa4.05□□□□□ -1.76
ATXN3-236ENST00000556220 C9orf116Q5BN46 136 aaPredicted RBP4.05□□□□□ -1.76
ATXN3-236ENST00000556220 ORMDL3Q8N138 153 aa4.05□□□□□ -1.76
ATXN3-236ENST00000556220 CHCHD10Q8WYQ3 142 aaPredicted RBP4.05□□□□□ -1.76
ATXN3-236ENST00000556220 CARD19Q96LW7 228 aa4.05□□□□□ -1.76
ATXN3-236ENST00000556220 IGKV3OR2-268A0A0C4DH90 116 aa4.04□□□□□ -1.76
ATXN3-236ENST00000556220 LINC00614P0C842 121 aa4.04□□□□□ -1.76
ATXN3-236ENST00000556220 CKS2P33552 79 aa4.04□□□□□ -1.76
ATXN3-236ENST00000556220 UBE2V1Q13404 147 aa4.04□□□□□ -1.76
ATXN3-236ENST00000556220 RNASEKQ6P5S7 137 aaKnown RBP4.04□□□□□ -1.76
ATXN3-236ENST00000556220 PHF5AQ7RTV0 110 aaKnown RBP4.04□□□□□ -1.76
ATXN3-236ENST00000556220 LINC00518Q8N0U6 118 aa4.04□□□□□ -1.76
ATXN3-236ENST00000556220 Q8N8P6 123 aa4.04□□□□□ -1.76
ATXN3-236ENST00000556220 LINC00526Q96FQ7 95 aa4.04□□□□□ -1.76
ATXN3-236ENST00000556220 MRAP2Q96G30 205 aa4.04□□□□□ -1.76
ATXN3-236ENST00000556220 AP1S3Q96PC3 154 aa4.04□□□□□ -1.76
ATXN3-236ENST00000556220 A0A087WZ39 114 aa4.03□□□□□ -1.76
ATXN3-236ENST00000556220 IGHV1-58A0A0C4DH39 117 aa4.03□□□□□ -1.76
ATXN3-236ENST00000556220 TRBV27A0A0K0K1C4 114 aa4.03□□□□□ -1.76
ATXN3-236ENST00000556220 LOC107984640A0A0U1RRK4 108 aa4.03□□□□□ -1.76
ATXN3-236ENST00000556220 SDHAF1A6NFY7 115 aa4.03□□□□□ -1.76
ATXN3-236ENST00000556220 IGIPA6NJ69 53 aa4.03□□□□□ -1.76
ATXN3-236ENST00000556220 UBE2L6O14933 153 aa4.03□□□□□ -1.76
ATXN3-236ENST00000556220 RPL32P62910 135 aaKnown RBP4.03□□□□□ -1.76
ATXN3-236ENST00000556220 SYCNQ0VAF6 134 aa4.03□□□□□ -1.76
ATXN3-236ENST00000556220 PACRGQ96M98 296 aaPredicted RBP4.03□□□□□ -1.76
ATXN3-236ENST00000556220 PMCHL2Q9BQD1 86 aa4.03□□□□□ -1.76
ATXN3-236ENST00000556220 FGF6P10767 208 aa4.02□□□□□ -1.77
ATXN3-236ENST00000556220 JOSD1Q15040 202 aaPredicted RBP4.02□□□□□ -1.77
ATXN3-236ENST00000556220 BAGE3Q86Y29 109 aa4.02□□□□□ -1.77
ATXN3-236ENST00000556220 IGLV4-69A0A075B6H9 119 aa4.01□□□□□ -1.77
ATXN3-236ENST00000556220 PPBPP02775 128 aa4.01□□□□□ -1.77
ATXN3-236ENST00000556220 SMIM17P0DL12 118 aa4.01□□□□□ -1.77
ATXN3-236ENST00000556220 TPRXLQ17RH7 258 aa4.01□□□□□ -1.77
ATXN3-236ENST00000556220 GAGE2EQ4V326 116 aa4.01□□□□□ -1.77
ATXN3-236ENST00000556220 GAGE2AQ6NT46 116 aa4.01□□□□□ -1.77
ATXN3-236ENST00000556220 KRTAP11-1Q8IUC1 163 aa4.01□□□□□ -1.77
ATXN3-236ENST00000556220 ATOH7Q8N100 152 aa4.01□□□□□ -1.77
ATXN3-236ENST00000556220 CHCHD1Q96BP2 118 aaKnown RBP4.01□□□□□ -1.77
ATXN3-236ENST00000556220 NIT2Q9NQR4 276 aa4.01□□□□□ -1.77
ATXN3-236ENST00000556220 GAGE2DQ9UEU5 116 aa4.01□□□□□ -1.77
ATXN3-236ENST00000556220 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4□□□□□ -1.77
ATXN3-236ENST00000556220 S100A8P05109 93 aa4□□□□□ -1.77
ATXN3-236ENST00000556220 FCER1GP30273 86 aa4□□□□□ -1.77
ATXN3-236ENST00000556220 XCL1P47992 114 aa4□□□□□ -1.77
ATXN3-236ENST00000556220 AKR1D1P51857 326 aa4□□□□□ -1.77
ATXN3-236ENST00000556220 COTL1Q14019 142 aa4□□□□□ -1.77
ATXN3-236ENST00000556220 RNASE13Q5GAN3 156 aaKnown RBP4□□□□□ -1.77
ATXN3-236ENST00000556220 LINC01545Q5VT33 79 aa4□□□□□ -1.77
ATXN3-236ENST00000556220 TEX43Q6ZNM6 134 aa4□□□□□ -1.77
ATXN3-236ENST00000556220 BORCS7Q96B45 105 aa4□□□□□ -1.77
ATXN3-236ENST00000556220 C20orf78Q9BR46 151 aa4□□□□□ -1.77
ATXN3-236ENST00000556220 MAP1LC3AQ9H492 121 aa4□□□□□ -1.77
ATXN3-236ENST00000556220 LAMTOR2Q9Y2Q5 125 aa4□□□□□ -1.77
ATXN3-236ENST00000556220 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.99□□□□□ -1.77
ATXN3-236ENST00000556220 IGKV2D-26A0A0A0MRZ7 120 aa3.99□□□□□ -1.77
ATXN3-236ENST00000556220 IGKV2-29A2NJV5 120 aaPredicted RBP3.99□□□□□ -1.77
ATXN3-236ENST00000556220 SYS1-DBNDD2H3BUS1 97 aa3.99□□□□□ -1.77
ATXN3-236ENST00000556220 APOMO95445 188 aa3.99□□□□□ -1.77
ATXN3-236ENST00000556220 S100A6P06703 90 aa3.99□□□□□ -1.77
ATXN3-236ENST00000556220 PRSS2P07478 247 aa3.99□□□□□ -1.77
ATXN3-236ENST00000556220 CRYGAP11844 174 aa3.99□□□□□ -1.77
ATXN3-236ENST00000556220 SEC61BP60468 96 aaKnown RBP3.99□□□□□ -1.77
ATXN3-236ENST00000556220 Q6ZUT4 128 aa3.99□□□□□ -1.77
ATXN3-236ENST00000556220 TOMM6Q96B49 74 aa3.99□□□□□ -1.77
ATXN3-236ENST00000556220 TTTY13Q9BZ97 58 aa3.99□□□□□ -1.77
ATXN3-236ENST00000556220 ST20Q9HBF5 79 aa3.99□□□□□ -1.77
ATXN3-236ENST00000556220 IGLV7-46A0A075B6I9 117 aa3.98□□□□□ -1.77
ATXN3-236ENST00000556220 IGLV4-3A0A075B6K6 122 aa3.98□□□□□ -1.77
ATXN3-236ENST00000556220 CCL25O15444 150 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms