RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 C6orf48Q9UBA6 75 aa12.82□□□□□ -0.36
VTI1B-205ENST00000555543 A0A1W2PNN7 141 aa12.81□□□□□ -0.36
VTI1B-205ENST00000555543 PAPPA-AS1Q5QFB9 102 aa12.81□□□□□ -0.36
VTI1B-205ENST00000555543 LINC01561Q8N1V8 128 aa12.81□□□□□ -0.36
VTI1B-205ENST00000555543 C18orf32Q8TCD1 76 aa12.81□□□□□ -0.36
VTI1B-205ENST00000555543 C5orf52A6NGY3 159 aa12.8□□□□□ -0.36
VTI1B-205ENST00000555543 PRR3P79522 188 aaKnown RBP12.8□□□□□ -0.36
VTI1B-205ENST00000555543 C2orf82Q6UX34 121 aa12.8□□□□□ -0.36
VTI1B-205ENST00000555543 FA2HQ7L5A8 372 aa12.8□□□□□ -0.36
VTI1B-205ENST00000555543 SNRPEP62304 92 aaKnown RBP12.79□□□□□ -0.36
VTI1B-205ENST00000555543 BAGE3Q86Y29 109 aa12.79□□□□□ -0.36
VTI1B-205ENST00000555543 CDKN2A-AS1Q9UH64 79 aa12.79□□□□□ -0.36
VTI1B-205ENST00000555543 OXTP01178 125 aa12.78□□□□□ -0.36
VTI1B-205ENST00000555543 C9orf116Q5BN46 136 aaPredicted RBP12.78□□□□□ -0.36
VTI1B-205ENST00000555543 URB1-AS1Q96HZ7 61 aa12.78□□□□□ -0.36
VTI1B-205ENST00000555543 HERVK_113P63121 156 aa12.77□□□□□ -0.37
VTI1B-205ENST00000555543 Q6ZRP5 223 aa12.77□□□□□ -0.37
VTI1B-205ENST00000555543 TLX1NBP0CAT3 122 aa12.76□□□□□ -0.37
VTI1B-205ENST00000555543 A0A096LNJ9 63 aa12.75□□□□□ -0.37
VTI1B-205ENST00000555543 LINC01549A6NIU2 74 aa12.75□□□□□ -0.37
VTI1B-205ENST00000555543 SEC11AP67812 179 aa12.75□□□□□ -0.37
VTI1B-205ENST00000555543 GEMIN7Q9H840 131 aaKnown RBP12.75□□□□□ -0.37
VTI1B-205ENST00000555543 TOMM7Q9P0U1 55 aa12.75□□□□□ -0.37
VTI1B-205ENST00000555543 TRBV30A0A0K0K1B3 111 aa12.74□□□□□ -0.37
VTI1B-205ENST00000555543 SERF1AO75920 110 aa12.74□□□□□ -0.37
VTI1B-205ENST00000555543 LINC00310P59036 64 aa12.74□□□□□ -0.37
VTI1B-205ENST00000555543 Q8IZM0 81 aa12.73□□□□□ -0.37
VTI1B-205ENST00000555543 HIST3H2BBQ8N257 126 aa12.73□□□□□ -0.37
VTI1B-205ENST00000555543 CST9LQ9H4G1 147 aa12.73□□□□□ -0.37
VTI1B-205ENST00000555543 LOC105371267A0A1B0GV96 52 aa12.72□□□□□ -0.37
VTI1B-205ENST00000555543 FAM168BA1KXE4 195 aa12.72□□□□□ -0.37
VTI1B-205ENST00000555543 NUPR1O60356 82 aa12.72□□□□□ -0.37
VTI1B-205ENST00000555543 PRSS2P07478 247 aa12.72□□□□□ -0.37
VTI1B-205ENST00000555543 GAGE2EQ4V326 116 aa12.72□□□□□ -0.37
VTI1B-205ENST00000555543 LINC00469Q8N7U9 141 aa12.72□□□□□ -0.37
VTI1B-205ENST00000555543 GAGE2DQ9UEU5 116 aa12.72□□□□□ -0.37
VTI1B-205ENST00000555543 TINCRA0A1B0GVN0 87 aa12.71□□□□□ -0.37
VTI1B-205ENST00000555543 PHF5AQ7RTV0 110 aaKnown RBP12.71□□□□□ -0.37
VTI1B-205ENST00000555543 CHCHD1Q96BP2 118 aaKnown RBP12.71□□□□□ -0.37
VTI1B-205ENST00000555543 PACRGQ96M98 296 aaPredicted RBP12.71□□□□□ -0.37
VTI1B-205ENST00000555543 IGLV5-45A0A087WSX0 123 aa12.7□□□□□ -0.38
VTI1B-205ENST00000555543 SMIM1B2RUZ4 78 aa12.7□□□□□ -0.38
VTI1B-205ENST00000555543 LINC00614P0C842 121 aa12.7□□□□□ -0.38
VTI1B-205ENST00000555543 PMVKQ15126 192 aa12.7□□□□□ -0.38
VTI1B-205ENST00000555543 PMCHL1Q16048 86 aa12.7□□□□□ -0.38
VTI1B-205ENST00000555543 NDUFC2-KCTD14E9PQ53 114 aa12.69□□□□□ -0.38
VTI1B-205ENST00000555543 S100A2P29034 98 aa12.69□□□□□ -0.38
VTI1B-205ENST00000555543 C6orf226Q5I0X4 101 aa12.69□□□□□ -0.38
VTI1B-205ENST00000555543 HMCN2Q8NDA2 5059 aa12.68□□□□□ -0.38
VTI1B-205ENST00000555543 CKS1BP61024 79 aa12.68□□□□□ -0.38
VTI1B-205ENST00000555543 PDZD11Q5EBL8 140 aa12.68□□□□□ -0.38
VTI1B-205ENST00000555543 KRTAP7-1Q8IUC3 87 aa12.68□□□□□ -0.38
VTI1B-205ENST00000555543 HSBP1O75506 76 aa12.67□□□□□ -0.38
VTI1B-205ENST00000555543 MT1HL1P0DM35 61 aa12.67□□□□□ -0.38
VTI1B-205ENST00000555543 FAM19A5Q7Z5A7 132 aaPredicted RBP12.67□□□□□ -0.38
VTI1B-205ENST00000555543 HBDP02042 147 aa12.66□□□□□ -0.38
VTI1B-205ENST00000555543 C9orf129Q5T035 196 aaKnown RBP12.66□□□□□ -0.38
VTI1B-205ENST00000555543 HIST1H2BLQ99880 126 aa12.66□□□□□ -0.38
VTI1B-205ENST00000555543 PSORS1C2Q9UIG4 136 aa12.66□□□□□ -0.38
VTI1B-205ENST00000555543 SPINK8P0C7L1 97 aa12.65□□□□□ -0.38
VTI1B-205ENST00000555543 TNXBP22105 4242 aa12.65□□□□□ -0.38
VTI1B-205ENST00000555543 F8VRH5 84 aa12.64□□□□□ -0.39
VTI1B-205ENST00000555543 KRTAP11-1Q8IUC1 163 aa12.64□□□□□ -0.39
VTI1B-205ENST00000555543 IGLC3P0DOY3 106 aa12.63□□□□□ -0.39
VTI1B-205ENST00000555543 SRSF9Q13242 221 aaKnown RBP eCLIP12.63□□□□□ -0.39
VTI1B-205ENST00000555543 COX7B2Q8TF08 81 aa12.63□□□□□ -0.39
VTI1B-205ENST00000555543 FABP4P15090 132 aa12.62□□□□□ -0.39
VTI1B-205ENST00000555543 FAM19A2Q8N3H0 131 aa12.62□□□□□ -0.39
VTI1B-205ENST00000555543 CXCL5P42830 114 aa12.61□□□□□ -0.39
VTI1B-205ENST00000555543 SPINK6Q6UWN8 80 aa12.61□□□□□ -0.39
VTI1B-205ENST00000555543 M0QXV9 152 aa12.6□□□□□ -0.39
VTI1B-205ENST00000555543 ZNF22P17026 224 aaPredicted RBP12.59□□□□□ -0.39
VTI1B-205ENST00000555543 C1orf137Q5JT78 98 aa12.59□□□□□ -0.39
VTI1B-205ENST00000555543 XAGE1AQ9HD64 81 aa12.59□□□□□ -0.39
VTI1B-205ENST00000555543 H3BRM9 83 aa12.58□□□□□ -0.4
VTI1B-205ENST00000555543 ATP5LO75964 103 aa12.58□□□□□ -0.4
VTI1B-205ENST00000555543 SERTAD4-AS1Q5TG53 156 aa12.58□□□□□ -0.4
VTI1B-205ENST00000555543 IGLV5-39A0A0G2JS06 123 aa12.57□□□□□ -0.4
VTI1B-205ENST00000555543 AKR1D1P51857 326 aa12.57□□□□□ -0.4
VTI1B-205ENST00000555543 C11orf86A6NJI1 115 aa12.55□□□□□ -0.4
VTI1B-205ENST00000555543 LINC01600Q96MT4 127 aa12.55□□□□□ -0.4
VTI1B-205ENST00000555543 LEPROTL1O95214 131 aa12.54□□□□□ -0.4
VTI1B-205ENST00000555543 HSPB8Q9UJY1 196 aa12.54□□□□□ -0.4
VTI1B-205ENST00000555543 UBE2BP63146 152 aa12.53□□□□□ -0.4
VTI1B-205ENST00000555543 IGLV7-43P04211 117 aa12.52□□□□□ -0.41
VTI1B-205ENST00000555543 REG3GQ6UW15 175 aa12.52□□□□□ -0.41
VTI1B-205ENST00000555543 IFI27L1Q96BM0 104 aa12.51□□□□□ -0.41
VTI1B-205ENST00000555543 CHTOPQ9Y3Y2 248 aaKnown RBP12.51□□□□□ -0.41
VTI1B-205ENST00000555543 C22orf24Q9Y442 160 aa12.51□□□□□ -0.41
VTI1B-205ENST00000555543 TMEM170BQ5T4T1 132 aa12.5□□□□□ -0.41
VTI1B-205ENST00000555543 TRAV12-1A0A0B4J245 112 aa12.48□□□□□ -0.41
VTI1B-205ENST00000555543 C3orf79P0CE67 100 aa12.48□□□□□ -0.41
VTI1B-205ENST00000555543 KRTDAPP60985 99 aa12.48□□□□□ -0.41
VTI1B-205ENST00000555543 ODF1Q14990 250 aa12.48□□□□□ -0.41
VTI1B-205ENST00000555543 JOSD1Q15040 202 aaPredicted RBP12.47□□□□□ -0.41
VTI1B-205ENST00000555543 MAP1LC3CQ9BXW4 147 aa12.47□□□□□ -0.41
VTI1B-205ENST00000555543 KRTAP10-8P60410 259 aa12.46□□□□□ -0.41
VTI1B-205ENST00000555543 SYS1-DBNDD2H3BUS1 97 aa12.45□□□□□ -0.42
VTI1B-205ENST00000555543 PFN2P35080 140 aa12.45□□□□□ -0.42
VTI1B-205ENST00000555543 TP73-AS1Q9UF72 201 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 114.6 ms