RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 SPINK9Q5DT21 86 aa1.64□□□□□ -2.15
VRK1-203ENST00000555067 LINC00643Q86TS7 51 aa1.64□□□□□ -2.15
VRK1-203ENST00000555067 MUSTN1Q8IVN3 82 aa1.64□□□□□ -2.15
VRK1-203ENST00000555067 DEFB107AQ8IZN7 70 aa1.64□□□□□ -2.15
VRK1-203ENST00000555067 LINC01600Q96MT4 127 aa1.64□□□□□ -2.15
VRK1-203ENST00000555067 ABCA10Q8WWZ4 1543 aa1.64□□□□□ -2.15
VRK1-203ENST00000555067 HFM1A2PYH4 1435 aa1.64□□□□□ -2.15
VRK1-203ENST00000555067 LRP6O75581 1613 aa1.63□□□□□ -2.15
VRK1-203ENST00000555067 Q5BKY6 102 aa1.63□□□□□ -2.15
VRK1-203ENST00000555067 UBE2DNLQ8IWF7 75 aa1.63□□□□□ -2.15
VRK1-203ENST00000555067 NHSL1Q5SYE7 1610 aa1.62□□□□□ -2.15
VRK1-203ENST00000555067 CUX1P39880 1505 aa1.62□□□□□ -2.15
VRK1-203ENST00000555067 KIF20BQ96Q89 1820 aa1.62□□□□□ -2.15
VRK1-203ENST00000555067 KANTRA0A1W2PQU2 76 aa1.62□□□□□ -2.15
VRK1-203ENST00000555067 CRYBG1Q9Y4K1 1723 aa1.62□□□□□ -2.15
VRK1-203ENST00000555067 TARBP1Q13395 1621 aaKnown RBP1.62□□□□□ -2.15
VRK1-203ENST00000555067 C5P01031 1676 aa1.61□□□□□ -2.15
VRK1-203ENST00000555067 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP1.61□□□□□ -2.15
VRK1-203ENST00000555067 SPINK7P58062 85 aa1.61□□□□□ -2.15
VRK1-203ENST00000555067 PLAC8Q9NZF1 115 aa1.61□□□□□ -2.15
VRK1-203ENST00000555067 PAPPA2Q9BXP8 1791 aa1.61□□□□□ -2.15
VRK1-203ENST00000555067 MROH1Q8NDA8 1641 aa1.61□□□□□ -2.15
VRK1-203ENST00000555067 UGGT2Q9NYU1 1516 aa1.61□□□□□ -2.15
VRK1-203ENST00000555067 KMT2BQ9UMN6 2715 aaPredicted RBP1.6□□□□□ -2.15
VRK1-203ENST00000555067 H0Y9P7 68 aa1.6□□□□□ -2.15
VRK1-203ENST00000555067 CFDP00746 253 aaPredicted RBP1.6□□□□□ -2.15
VRK1-203ENST00000555067 ACYP1P07311 99 aa1.6□□□□□ -2.15
VRK1-203ENST00000555067 BVES-AS1Q5T3Y7 98 aa1.6□□□□□ -2.15
VRK1-203ENST00000555067 XRN1Q8IZH2 1706 aaKnown RBP1.6□□□□□ -2.15
VRK1-203ENST00000555067 ANKARQ7Z5J8 1434 aa1.59□□□□□ -2.15
VRK1-203ENST00000555067 A0A0D9SG42 100 aa1.59□□□□□ -2.15
VRK1-203ENST00000555067 TRBV6-1A0A0K0K1D8 114 aa1.59□□□□□ -2.15
VRK1-203ENST00000555067 MYMXA0A1B0GTQ4 84 aa1.59□□□□□ -2.15
VRK1-203ENST00000555067 H3BUT2 72 aa1.59□□□□□ -2.15
VRK1-203ENST00000555067 IGLC2P0DOY2 106 aa1.59□□□□□ -2.15
VRK1-203ENST00000555067 IGLC3P0DOY3 106 aa1.59□□□□□ -2.15
VRK1-203ENST00000555067 SPATA8Q6RVD6 105 aa1.59□□□□□ -2.15
VRK1-203ENST00000555067 KCPQ6ZWJ8 1503 aa1.58□□□□□ -2.16
VRK1-203ENST00000555067 HEPN1Q6WQI6 88 aa1.58□□□□□ -2.16
VRK1-203ENST00000555067 SSBP3-AS1Q7Z2R9 100 aa1.58□□□□□ -2.16
VRK1-203ENST00000555067 UBE2D4Q9Y2X8 147 aa1.58□□□□□ -2.16
VRK1-203ENST00000555067 ERCC6L2Q5T890 1561 aa1.58□□□□□ -2.16
VRK1-203ENST00000555067 LAMC1P11047 1609 aa1.58□□□□□ -2.16
VRK1-203ENST00000555067 IQGAP3Q86VI3 1631 aa1.58□□□□□ -2.16
VRK1-203ENST00000555067 LTN1O94822 1766 aa1.57□□□□□ -2.16
VRK1-203ENST00000555067 CFAP74Q9C0B2 1584 aa1.57□□□□□ -2.16
VRK1-203ENST00000555067 PLGLAQ15195 96 aa1.57□□□□□ -2.16
VRK1-203ENST00000555067 C10orf95Q9H7T3 257 aa1.57□□□□□ -2.16
VRK1-203ENST00000555067 ALKQ9UM73 1620 aa1.57□□□□□ -2.16
VRK1-203ENST00000555067 NCOA2Q15596 1464 aa1.56□□□□□ -2.16
VRK1-203ENST00000555067 ASH1LQ9NR48 2969 aaKnown RBP1.56□□□□□ -2.16
VRK1-203ENST00000555067 SETBP1Q9Y6X0 1596 aa1.56□□□□□ -2.16
VRK1-203ENST00000555067 EFCAB5A4FU69 1503 aa1.56□□□□□ -2.16
VRK1-203ENST00000555067 DUOX2Q9NRD8 1548 aa1.56□□□□□ -2.16
VRK1-203ENST00000555067 ABCA8O94911 1581 aa1.55□□□□□ -2.16
VRK1-203ENST00000555067 PPRC1Q5VV67 1664 aaKnown RBP1.55□□□□□ -2.16
VRK1-203ENST00000555067 A0A087WXM4 84 aa1.55□□□□□ -2.16
VRK1-203ENST00000555067 C6orf201Q7Z4U5 140 aa1.55□□□□□ -2.16
VRK1-203ENST00000555067 AHCTF1Q8WYP5 2266 aa1.55□□□□□ -2.16
VRK1-203ENST00000555067 LMTK2Q8IWU2 1503 aa1.55□□□□□ -2.16
VRK1-203ENST00000555067 MADDQ8WXG6 1647 aa1.55□□□□□ -2.16
VRK1-203ENST00000555067 PTPN23Q9H3S7 1636 aa1.55□□□□□ -2.16
VRK1-203ENST00000555067 MYO5CQ9NQX4 1742 aa1.54□□□□□ -2.16
VRK1-203ENST00000555067 SCN11AQ9UI33 1791 aa1.54□□□□□ -2.16
VRK1-203ENST00000555067 ZNF462Q96JM2 2506 aa1.54□□□□□ -2.16
VRK1-203ENST00000555067 UMAD1C9J7I0 102 aa1.54□□□□□ -2.16
VRK1-203ENST00000555067 ABCC1P33527 1531 aa1.54□□□□□ -2.16
VRK1-203ENST00000555067 TIAM1Q13009 1591 aa1.54□□□□□ -2.16
VRK1-203ENST00000555067 PREX2Q70Z35 1606 aa1.54□□□□□ -2.16
VRK1-203ENST00000555067 ANKRD36A6QL64 1941 aa1.54□□□□□ -2.16
VRK1-203ENST00000555067 CEBPZOSA8MTT3 80 aa1.53□□□□□ -2.16
VRK1-203ENST00000555067 URB2Q14146 1524 aaKnown RBP1.53□□□□□ -2.16
VRK1-203ENST00000555067 C18orf32Q8TCD1 76 aa1.53□□□□□ -2.16
VRK1-203ENST00000555067 ABCA9Q8IUA7 1624 aa1.52□□□□□ -2.17
VRK1-203ENST00000555067 ATP7BP35670 1465 aa1.52□□□□□ -2.17
VRK1-203ENST00000555067 LRRC9Q6ZRR7 1453 aa1.52□□□□□ -2.17
VRK1-203ENST00000555067 A0A087WWC5 75 aa1.52□□□□□ -2.17
VRK1-203ENST00000555067 A0A1B0GU69 56 aa1.52□□□□□ -2.17
VRK1-203ENST00000555067 SFTA3P0C7M3 94 aa1.52□□□□□ -2.17
VRK1-203ENST00000555067 SMIM13P0DJ93 91 aa1.52□□□□□ -2.17
VRK1-203ENST00000555067 FAM103A1Q9BTL3 118 aaKnown RBP1.52□□□□□ -2.17
VRK1-203ENST00000555067 FAM208BQ5VWN6 2430 aa1.52□□□□□ -2.17
VRK1-203ENST00000555067 ANKRD17O75179 2603 aaKnown RBP1.52□□□□□ -2.17
VRK1-203ENST00000555067 PKD1L3Q7Z443 1732 aa1.52□□□□□ -2.17
VRK1-203ENST00000555067 SAMD9Q5K651 1589 aa1.51□□□□□ -2.17
VRK1-203ENST00000555067 FANCD2Q9BXW9 1451 aa1.51□□□□□ -2.17
VRK1-203ENST00000555067 TOP2AP11388 1531 aaKnown RBP1.5□□□□□ -2.17
VRK1-203ENST00000555067 A0A0G2JMZ2 1700 aa1.5□□□□□ -2.17
VRK1-203ENST00000555067 S100A3P33764 101 aa1.5□□□□□ -2.17
VRK1-203ENST00000555067 SMIM5Q71RC9 77 aa1.5□□□□□ -2.17
VRK1-203ENST00000555067 PLXNC1O60486 1568 aa1.5□□□□□ -2.17
VRK1-203ENST00000555067 RGPD8O14715 1765 aaPredicted RBP1.49□□□□□ -2.17
VRK1-203ENST00000555067 RGPD5Q99666 1765 aa1.49□□□□□ -2.17
VRK1-203ENST00000555067 LINC00959A0A1B0GUT2 108 aa1.49□□□□□ -2.17
VRK1-203ENST00000555067 TULP4Q9NRJ4 1543 aa1.49□□□□□ -2.17
VRK1-203ENST00000555067 PRXQ9BXM0 1461 aa1.49□□□□□ -2.17
VRK1-203ENST00000555067 NKTRP30414 1462 aaKnown RBP1.48□□□□□ -2.17
VRK1-203ENST00000555067 RNF17Q9BXT8 1623 aaKnown RBP1.48□□□□□ -2.17
VRK1-203ENST00000555067 RGPD2P0DJD1 1756 aa1.47□□□□□ -2.17
VRK1-203ENST00000555067 RGPD1P0DJD0 1748 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms