RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 ATP11AUNQ6ZP68 121 aa1.77□□□□□ -2.13
LIMA1-210ENST00000552045 FAIMQ9NVQ4 179 aa1.77□□□□□ -2.13
LIMA1-210ENST00000552045 TAS2R8Q9NYW2 309 aa1.77□□□□□ -2.13
LIMA1-210ENST00000552045 PAIP2BQ9ULR5 123 aaKnown RBP1.77□□□□□ -2.13
LIMA1-210ENST00000552045 CSMD3Q7Z407 3707 aa1.77□□□□□ -2.13
LIMA1-210ENST00000552045 SRRM2Q9UQ35 2752 aaKnown RBP1.76□□□□□ -2.13
LIMA1-210ENST00000552045 PKHD1P08F94 4074 aa1.76□□□□□ -2.13
LIMA1-210ENST00000552045 HSPG2P98160 4391 aa1.76□□□□□ -2.13
LIMA1-210ENST00000552045 TRBV20-1A0A075B6N2 111 aa1.76□□□□□ -2.13
LIMA1-210ENST00000552045 CLPSL1A2RUU4 121 aa1.76□□□□□ -2.13
LIMA1-210ENST00000552045 K7ERU9 68 aa1.76□□□□□ -2.13
LIMA1-210ENST00000552045 POLR2JP52435 117 aaKnown RBP1.76□□□□□ -2.13
LIMA1-210ENST00000552045 CCDC58Q4VC31 144 aa1.76□□□□□ -2.13
LIMA1-210ENST00000552045 UNQ5815/PRO19632Q6UWF5 114 aa1.76□□□□□ -2.13
LIMA1-210ENST00000552045 Q8N6K4 173 aa1.76□□□□□ -2.13
LIMA1-210ENST00000552045 DMAC1Q96GE9 116 aa1.76□□□□□ -2.13
LIMA1-210ENST00000552045 TPT1P8Q9HAU6 139 aa1.76□□□□□ -2.13
LIMA1-210ENST00000552045 MRPL35Q9NZE8 188 aaKnown RBP1.76□□□□□ -2.13
LIMA1-210ENST00000552045 ALMS1Q8TCU4 4167 aa1.76□□□□□ -2.13
LIMA1-210ENST00000552045 KMT2AQ03164 3969 aa1.76□□□□□ -2.13
LIMA1-210ENST00000552045 DNAH7Q8WXX0 4024 aa1.75□□□□□ -2.13
LIMA1-210ENST00000552045 IQCJQ1A5X6 159 aa1.75□□□□□ -2.13
LIMA1-210ENST00000552045 Q6ZQY7 126 aa1.75□□□□□ -2.13
LIMA1-210ENST00000552045 MYH9P35579 1960 aaKnown RBP1.75□□□□□ -2.13
LIMA1-210ENST00000552045 MYH6P13533 1939 aa1.75□□□□□ -2.13
LIMA1-210ENST00000552045 STARD9Q9P2P6 4700 aa1.74□□□□□ -2.13
LIMA1-210ENST00000552045 TRAV2A0A0B4J234 112 aa1.74□□□□□ -2.13
LIMA1-210ENST00000552045 RPS25P62851 125 aaKnown RBP1.74□□□□□ -2.13
LIMA1-210ENST00000552045 DNAH10Q8IVF4 4471 aa1.73□□□□□ -2.13
LIMA1-210ENST00000552045 M0R129 80 aa1.73□□□□□ -2.13
LIMA1-210ENST00000552045 NPFFO15130 113 aa1.73□□□□□ -2.13
LIMA1-210ENST00000552045 DYNLRB2Q8TF09 96 aa1.73□□□□□ -2.13
LIMA1-210ENST00000552045 PPDPFLQ8WWR9 84 aa1.73□□□□□ -2.13
LIMA1-210ENST00000552045 ATG5Q9H1Y0 275 aa1.73□□□□□ -2.13
LIMA1-210ENST00000552045 PLECQ15149 4684 aaKnown RBP1.73□□□□□ -2.13
LIMA1-210ENST00000552045 DYNC1H1Q14204 4646 aaKnown RBP1.73□□□□□ -2.13
LIMA1-210ENST00000552045 J3QLW9 94 aa1.72□□□□□ -2.13
LIMA1-210ENST00000552045 NDUFA2O43678 99 aa1.72□□□□□ -2.13
LIMA1-210ENST00000552045 ASIPP42127 132 aa1.72□□□□□ -2.13
LIMA1-210ENST00000552045 XAF1Q6GPH4 301 aa1.72□□□□□ -2.13
LIMA1-210ENST00000552045 BPESC1Q9GZL8 116 aa1.72□□□□□ -2.13
LIMA1-210ENST00000552045 SAR1AQ9NR31 198 aa1.72□□□□□ -2.13
LIMA1-210ENST00000552045 HUWE1Q7Z6Z7 4374 aaKnown RBP1.72□□□□□ -2.13
LIMA1-210ENST00000552045 DNAJC13O75165 2243 aa1.72□□□□□ -2.13
LIMA1-210ENST00000552045 MED12Q93074 2177 aa1.72□□□□□ -2.13
LIMA1-210ENST00000552045 DNAH3Q8TD57 4116 aa1.72□□□□□ -2.13
LIMA1-210ENST00000552045 UQCRHLA0A096LP55 91 aa1.71□□□□□ -2.14
LIMA1-210ENST00000552045 A0A0D9SFI3 127 aa1.71□□□□□ -2.14
LIMA1-210ENST00000552045 TRBV30A0A0K0K1B3 111 aa1.71□□□□□ -2.14
LIMA1-210ENST00000552045 HIGD1CA8MV81 97 aa1.71□□□□□ -2.14
LIMA1-210ENST00000552045 ZNF670-ZNF695F2Z2N8 137 aa1.71□□□□□ -2.14
LIMA1-210ENST00000552045 SPTBP11277 2137 aa1.71□□□□□ -2.14
LIMA1-210ENST00000552045 Q86TA4 180 aa1.71□□□□□ -2.14
LIMA1-210ENST00000552045 ERG28Q9UKR5 140 aa1.71□□□□□ -2.14
LIMA1-210ENST00000552045 DNAH11Q96DT5 4516 aa1.7□□□□□ -2.14
LIMA1-210ENST00000552045 TRBV10-1A0A0K0K1A3 114 aa1.7□□□□□ -2.14
LIMA1-210ENST00000552045 LOC101927531A0A1B0GV80 90 aa1.7□□□□□ -2.14
LIMA1-210ENST00000552045 COPZ1P61923 177 aa1.7□□□□□ -2.14
LIMA1-210ENST00000552045 ATOH7Q8N100 152 aa1.7□□□□□ -2.14
LIMA1-210ENST00000552045 MYCBP2O75592 4640 aa1.7□□□□□ -2.14
LIMA1-210ENST00000552045 NBDYA0A0U1RRE5 68 aa1.69□□□□□ -2.14
LIMA1-210ENST00000552045 CXorf51AA0A1B0GTR3 108 aa1.69□□□□□ -2.14
LIMA1-210ENST00000552045 A0A1W2PPM0 123 aa1.69□□□□□ -2.14
LIMA1-210ENST00000552045 FXYD3Q14802 87 aa1.69□□□□□ -2.14
LIMA1-210ENST00000552045 DEFB110Q30KQ9 67 aa1.69□□□□□ -2.14
LIMA1-210ENST00000552045 SCIMPQ6UWF3 145 aa1.69□□□□□ -2.14
LIMA1-210ENST00000552045 TSC22D3Q99576 134 aa1.69□□□□□ -2.14
LIMA1-210ENST00000552045 VPS25Q9BRG1 176 aa1.69□□□□□ -2.14
LIMA1-210ENST00000552045 FAT2Q9NYQ8 4349 aa1.69□□□□□ -2.14
LIMA1-210ENST00000552045 CCKP06307 115 aa1.67□□□□□ -2.14
LIMA1-210ENST00000552045 CAV3P56539 151 aa1.67□□□□□ -2.14
LIMA1-210ENST00000552045 NCMAPQ5T1S8 102 aa1.67□□□□□ -2.14
LIMA1-210ENST00000552045 LELP1Q5T871 98 aa1.67□□□□□ -2.14
LIMA1-210ENST00000552045 MIC13Q5XKP0 118 aa1.67□□□□□ -2.14
LIMA1-210ENST00000552045 WFDC9Q8NEX5 89 aa1.67□□□□□ -2.14
LIMA1-210ENST00000552045 TFF1P04155 84 aa1.66□□□□□ -2.14
LIMA1-210ENST00000552045 SLC25A6P12236 298 aa1.66□□□□□ -2.14
LIMA1-210ENST00000552045 Q5VSD8 79 aa1.66□□□□□ -2.14
LIMA1-210ENST00000552045 LINC00208Q96KT6 92 aa1.66□□□□□ -2.14
LIMA1-210ENST00000552045 PITX3O75364 302 aa1.65□□□□□ -2.15
LIMA1-210ENST00000552045 C5orf56Q8N8D9 126 aa1.65□□□□□ -2.15
LIMA1-210ENST00000552045 VSTM2AQ8TAG5 236 aa1.65□□□□□ -2.15
LIMA1-210ENST00000552045 LCN9Q8WX39 176 aa1.65□□□□□ -2.15
LIMA1-210ENST00000552045 LRP2P98164 4655 aa1.64□□□□□ -2.15
LIMA1-210ENST00000552045 Q6ZUT4 128 aa1.64□□□□□ -2.15
LIMA1-210ENST00000552045 NDUFA11Q86Y39 141 aa1.64□□□□□ -2.15
LIMA1-210ENST00000552045 COX14Q96I36 57 aa1.64□□□□□ -2.15
LIMA1-210ENST00000552045 PKHD1L1Q86WI1 4243 aa1.64□□□□□ -2.15
LIMA1-210ENST00000552045 PYYP10082 97 aa1.63□□□□□ -2.15
LIMA1-210ENST00000552045 LINC01545Q5VT33 79 aa1.63□□□□□ -2.15
LIMA1-210ENST00000552045 SDF2Q99470 211 aa1.63□□□□□ -2.15
LIMA1-210ENST00000552045 VPS13DQ5THJ4 4388 aa1.62□□□□□ -2.15
LIMA1-210ENST00000552045 CCDC179H3BU77 68 aa1.62□□□□□ -2.15
LIMA1-210ENST00000552045 DEFB112Q30KQ8 113 aa1.62□□□□□ -2.15
LIMA1-210ENST00000552045 C10orf99Q6UWK7 81 aa1.62□□□□□ -2.15
LIMA1-210ENST00000552045 PSMG3Q9BT73 122 aaPredicted RBP1.62□□□□□ -2.15
LIMA1-210ENST00000552045 TMEM191AQ9H0A3 160 aa1.62□□□□□ -2.15
LIMA1-210ENST00000552045 APOBP04114 4563 aaKnown RBP1.62□□□□□ -2.15
LIMA1-210ENST00000552045 FAT1Q14517 4588 aa1.62□□□□□ -2.15
LIMA1-210ENST00000552045 SSPOA2VEC9 5147 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms