RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 HIST1H2BJP06899 126 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 IGLC6P0CF74 106 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 HIST1H2BOP23527 126 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 HLA-DMBP28068 263 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 HIST1H2BBP33778 126 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 HIST1H2BDP58876 126 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 HIST1H2BCP62807 126 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 MIAQ16674 131 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 HIST2H2BEQ16778 126 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 SPATA45Q537H7 98 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 PYY3Q5JQD4 70 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.94□□□□□ -2.26
LIMA1-209ENST00000552008 TMEM170BQ5T4T1 132 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 LELP1Q5T871 98 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 CFAP126Q5VTH2 177 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 C10orf99Q6UWK7 81 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 HIST3H2BBQ8N257 126 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 SMIM20Q8N5G0 67 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 HIST1H2BHQ93079 126 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 PLEKHB2Q96CS7 222 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 C14orf144Q96I85 54 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 HIST1H2BNQ99877 126 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 HIST1H2BMQ99879 126 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 Q9BRP9 147 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 TIMM21Q9BVV7 248 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 SMIM2Q9BVW6 85 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 CNFNQ9BYD5 112 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 IMUPQ9GZP8 106 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 LINC00474Q9P2X8 69 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 V9GYV3 84 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 FREM2Q5SZK8 3169 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 APC2O95996 2303 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 PKD1L2Q7Z442 2459 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 DSPP15924 2871 aaKnown RBP0.94□□□□□ -2.26
LIMA1-209ENST00000552008 DMXL1Q9Y485 3027 aa0.94□□□□□ -2.26
LIMA1-209ENST00000552008 AKAP13Q12802 2813 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 IGSF10Q6WRI0 2623 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 IGF2RP11717 2491 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 DOPEY1Q5JWR5 2465 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 NAV2Q8IVL1 2488 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 DMXL2Q8TDJ6 3036 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 MYO18BQ8IUG5 2567 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 TRAV12-1A0A0B4J245 112 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 IGHV1-58A0A0C4DH39 117 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 A8MTW9 85 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 TMEM238C9JI98 176 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 M0QY20 66 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 COX7A2LO14548 114 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 KALRNO60229 2985 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 NPYP01303 97 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 IGKCP01834 107 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 SMIM13P0DJ93 91 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 ATP5EP56381 51 aaPredicted RBP0.93□□□□□ -2.26
LIMA1-209ENST00000552008 KRTAP12-4P60329 112 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 MRPS36P82909 103 aaKnown RBP0.93□□□□□ -2.26
LIMA1-209ENST00000552008 HSD52Q0P140 79 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 COX17Q14061 63 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 ESPL1Q14674 2120 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 KRTAP6-3Q3LI67 103 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 MEIG1Q5JSS6 88 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 GDF5OSQ5U4N7 250 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 Q6Q795 121 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 SPATA12Q7Z6I5 190 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 IFI27L1Q96BM0 104 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 HIST1H2BLQ99880 126 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 CST9LQ9H4G1 147 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 NHP2Q9NX24 153 aaKnown RBP0.93□□□□□ -2.26
LIMA1-209ENST00000552008 ANKHD1Q8IWZ3 2542 aaKnown RBP0.93□□□□□ -2.26
LIMA1-209ENST00000552008 CNOT1A5YKK6 2376 aaKnown RBP0.93□□□□□ -2.26
LIMA1-209ENST00000552008 VPS13AQ96RL7 3174 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 CHD8Q9HCK8 2581 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 HEATR5AQ86XA9 2040 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 FAM208BQ5VWN6 2430 aa0.93□□□□□ -2.26
LIMA1-209ENST00000552008 POLEQ07864 2286 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 EML6Q6ZMW3 1958 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 TANC2Q9HCD6 1990 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 DMDP11532 3685 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 DNAH14Q0VDD8 3507 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 RP1L1Q8IWN7 2480 aaPredicted RBP0.92□□□□□ -2.26
LIMA1-209ENST00000552008 TRAV13-2A0A0B4J235 113 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 TRAV13-1A0A0B4J241 112 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 IGKV3OR2-268A0A0C4DH90 116 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 A0A0J9YY99 117 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 F8VRH5 84 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 H3BMG7 143 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 SYS1-DBNDD2H3BUS1 97 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 J3KT08 172 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 NDUFA1O15239 70 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 LEPROTO15243 131 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 NDUFC1O43677 76 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 LY6G6CO95867 125 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 DNAL4O96015 105 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 FGF6P10767 208 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 RNASE3P12724 160 aaKnown RBP0.92□□□□□ -2.26
LIMA1-209ENST00000552008 IFITM1P13164 125 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 CRIP1P50238 77 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 ZNF80P51504 273 aaPredicted RBP0.92□□□□□ -2.26
LIMA1-209ENST00000552008 LINC00158P58513 81 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 UBE2D3P61077 147 aa0.92□□□□□ -2.26
LIMA1-209ENST00000552008 UBE2D2P62837 147 aa0.92□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms