RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 Q8N9P0 234 aaPredicted RBP6.01□□□□□ -1.45
VPS29-208ENST00000550267 C20orf78Q9BR46 151 aa6.01□□□□□ -1.45
VPS29-208ENST00000550267 KRTAP4-1Q9BYQ7 146 aa6.01□□□□□ -1.45
VPS29-208ENST00000550267 RPL37AP8A6NKH3 93 aa6□□□□□ -1.45
VPS29-208ENST00000550267 TCAPO15273 167 aa6□□□□□ -1.45
VPS29-208ENST00000550267 RPL32P62910 135 aaKnown RBP6□□□□□ -1.45
VPS29-208ENST00000550267 FAM104BQ5XKR9 115 aa6□□□□□ -1.45
VPS29-208ENST00000550267 SMIM2Q9BVW6 85 aa6□□□□□ -1.45
VPS29-208ENST00000550267 TOMM7Q9P0U1 55 aa6□□□□□ -1.45
VPS29-208ENST00000550267 TP73-AS1Q9UF72 201 aa6□□□□□ -1.45
VPS29-208ENST00000550267 TRBV24-1A0A075B6N3 115 aa5.99□□□□□ -1.45
VPS29-208ENST00000550267 IGKV2D-26A0A0A0MRZ7 120 aa5.99□□□□□ -1.45
VPS29-208ENST00000550267 TMEM250H0YL14 139 aa5.99□□□□□ -1.45
VPS29-208ENST00000550267 TNFRSF6BO95407 300 aa5.99□□□□□ -1.45
VPS29-208ENST00000550267 PRSS2P07478 247 aa5.99□□□□□ -1.45
VPS29-208ENST00000550267 FAM229BQ4G0N7 80 aa5.99□□□□□ -1.45
VPS29-208ENST00000550267 KRTAP13-1Q8IUC0 172 aa5.99□□□□□ -1.45
VPS29-208ENST00000550267 LINC00167Q96N53 147 aa5.99□□□□□ -1.45
VPS29-208ENST00000550267 OSTCQ9NRP0 149 aa5.99□□□□□ -1.45
VPS29-208ENST00000550267 IGLV4-3A0A075B6K6 122 aa5.98□□□□□ -1.45
VPS29-208ENST00000550267 LINC00862A6NCI5 91 aa5.98□□□□□ -1.45
VPS29-208ENST00000550267 GAGE10A6NGK3 116 aa5.98□□□□□ -1.45
VPS29-208ENST00000550267 CKS2P33552 79 aa5.98□□□□□ -1.45
VPS29-208ENST00000550267 CKS1BP61024 79 aa5.98□□□□□ -1.45
VPS29-208ENST00000550267 RGS21Q2M5E4 152 aa5.98□□□□□ -1.45
VPS29-208ENST00000550267 LINC01551Q86U37 167 aa5.98□□□□□ -1.45
VPS29-208ENST00000550267 LINC01561Q8N1V8 128 aa5.98□□□□□ -1.45
VPS29-208ENST00000550267 V9GYV3 84 aa5.98□□□□□ -1.45
VPS29-208ENST00000550267 IFI27P40305 119 aaPredicted RBP5.97□□□□□ -1.45
VPS29-208ENST00000550267 UBE2AP49459 152 aa5.97□□□□□ -1.45
VPS29-208ENST00000550267 ASB16-AS1Q495Z4 193 aa5.97□□□□□ -1.45
VPS29-208ENST00000550267 C6orf226Q5I0X4 101 aa5.97□□□□□ -1.45
VPS29-208ENST00000550267 NPYP01303 97 aa5.96□□□□□ -1.46
VPS29-208ENST00000550267 CTAG1AP78358 180 aa5.96□□□□□ -1.46
VPS29-208ENST00000550267 ZC2HC1BQ5TFG8 222 aa5.96□□□□□ -1.46
VPS29-208ENST00000550267 Q6ZN92 141 aa5.96□□□□□ -1.46
VPS29-208ENST00000550267 SMIM7Q9BQ49 75 aa5.96□□□□□ -1.46
VPS29-208ENST00000550267 PYGO1Q9Y3Y4 419 aa5.96□□□□□ -1.46
VPS29-208ENST00000550267 D6R8Y8 96 aa5.95□□□□□ -1.46
VPS29-208ENST00000550267 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.95□□□□□ -1.46
VPS29-208ENST00000550267 Q8IZM0 81 aa5.95□□□□□ -1.46
VPS29-208ENST00000550267 LINC00337Q8N6G1 96 aa5.95□□□□□ -1.46
VPS29-208ENST00000550267 TMEM141Q96I45 108 aa5.95□□□□□ -1.46
VPS29-208ENST00000550267 ALKBH7Q9BT30 221 aaPredicted RBP5.95□□□□□ -1.46
VPS29-208ENST00000550267 EIF5A2Q9GZV4 153 aaKnown RBP5.95□□□□□ -1.46
VPS29-208ENST00000550267 NAT8BQ9UHF3 227 aa5.95□□□□□ -1.46
VPS29-208ENST00000550267 PNRC1Q12796 327 aaPredicted RBP5.94□□□□□ -1.46
VPS29-208ENST00000550267 KRTAP13-3Q3SY46 172 aa5.94□□□□□ -1.46
VPS29-208ENST00000550267 TEX43Q6ZNM6 134 aa5.94□□□□□ -1.46
VPS29-208ENST00000550267 C3orf22Q8N5N4 141 aa5.94□□□□□ -1.46
VPS29-208ENST00000550267 BATF3Q9NR55 127 aa5.94□□□□□ -1.46
VPS29-208ENST00000550267 F8VRH5 84 aa5.93□□□□□ -1.46
VPS29-208ENST00000550267 FAM74A3Q4VXF1 159 aa5.93□□□□□ -1.46
VPS29-208ENST00000550267 FP248Q71RG6 208 aaPredicted RBP5.93□□□□□ -1.46
VPS29-208ENST00000550267 SLC51BQ86UW2 128 aa5.93□□□□□ -1.46
VPS29-208ENST00000550267 C2orf88Q9BSF0 95 aa5.93□□□□□ -1.46
VPS29-208ENST00000550267 RAB5AP20339 215 aa5.92□□□□□ -1.46
VPS29-208ENST00000550267 PRLHP81277 87 aa5.92□□□□□ -1.46
VPS29-208ENST00000550267 IGLV5-37A0A075B6J1 123 aa5.91□□□□□ -1.46
VPS29-208ENST00000550267 IGKV2-28A0A075B6P5 120 aa5.91□□□□□ -1.46
VPS29-208ENST00000550267 SCO1O75880 301 aa5.91□□□□□ -1.46
VPS29-208ENST00000550267 IGKV2D-28P01615 120 aa5.91□□□□□ -1.46
VPS29-208ENST00000550267 KRTAP10-7P60409 375 aaPredicted RBP5.91□□□□□ -1.46
VPS29-208ENST00000550267 SEC61BP60468 96 aaKnown RBP5.91□□□□□ -1.46
VPS29-208ENST00000550267 NKAPP1Q8N9T2 125 aa5.91□□□□□ -1.46
VPS29-208ENST00000550267 A0A1B0GW15 77 aa5.9□□□□□ -1.46
VPS29-208ENST00000550267 SMIM27A0A1W2PRY6 76 aa5.9□□□□□ -1.46
VPS29-208ENST00000550267 MRPL54Q6P161 138 aaKnown RBP5.9□□□□□ -1.46
VPS29-208ENST00000550267 SPAG11AQ6PDA7 123 aa5.9□□□□□ -1.46
VPS29-208ENST00000550267 C2orf66Q6UXQ4 117 aa5.9□□□□□ -1.46
VPS29-208ENST00000550267 FAM19A1Q7Z5A9 133 aa5.9□□□□□ -1.46
VPS29-208ENST00000550267 AMELXQ99217 191 aa5.9□□□□□ -1.46
VPS29-208ENST00000550267 VCX2Q9H322 139 aa5.9□□□□□ -1.46
VPS29-208ENST00000550267 CDKN2A-AS1Q9UH64 79 aa5.9□□□□□ -1.46
VPS29-208ENST00000550267 F8W036 122 aa5.89□□□□□ -1.47
VPS29-208ENST00000550267 PPBPP02775 128 aa5.89□□□□□ -1.47
VPS29-208ENST00000550267 SRP19P09132 144 aaKnown RBP5.89□□□□□ -1.47
VPS29-208ENST00000550267 RPL23P62829 140 aaKnown RBP5.89□□□□□ -1.47
VPS29-208ENST00000550267 FAM19A3Q7Z5A8 133 aa5.89□□□□□ -1.47
VPS29-208ENST00000550267 LOC389332A0A1B0GUA5 103 aa5.88□□□□□ -1.47
VPS29-208ENST00000550267 CXCL5P42830 114 aa5.88□□□□□ -1.47
VPS29-208ENST00000550267 ALKAL2Q6UX46 152 aa5.88□□□□□ -1.47
VPS29-208ENST00000550267 ORMDL3Q8N138 153 aa5.88□□□□□ -1.47
VPS29-208ENST00000550267 PLEKHB2Q96CS7 222 aa5.88□□□□□ -1.47
VPS29-208ENST00000550267 PRELID3AQ96N28 172 aa5.88□□□□□ -1.47
VPS29-208ENST00000550267 CYSLTR1Q9Y271 337 aa5.88□□□□□ -1.47
VPS29-208ENST00000550267 A0A1B0GXF2 115 aa5.87□□□□□ -1.47
VPS29-208ENST00000550267 TMEM238C9JI98 176 aa5.87□□□□□ -1.47
VPS29-208ENST00000550267 S100A8P05109 93 aa5.87□□□□□ -1.47
VPS29-208ENST00000550267 RAB5BP61020 215 aa5.87□□□□□ -1.47
VPS29-208ENST00000550267 HERVK_113P63121 156 aa5.87□□□□□ -1.47
VPS29-208ENST00000550267 ADIRFQ15847 76 aa5.87□□□□□ -1.47
VPS29-208ENST00000550267 TMEM136Q6ZRR5 245 aa5.87□□□□□ -1.47
VPS29-208ENST00000550267 TMEM126AQ9H061 195 aa5.87□□□□□ -1.47
VPS29-208ENST00000550267 MT1HP80294 61 aa5.86□□□□□ -1.47
VPS29-208ENST00000550267 DAND5Q8N907 189 aa5.86□□□□□ -1.47
VPS29-208ENST00000550267 GEMIN7Q9H840 131 aaKnown RBP5.86□□□□□ -1.47
VPS29-208ENST00000550267 IGIPA6NJ69 53 aa5.85□□□□□ -1.47
VPS29-208ENST00000550267 PRSS47A8MTI9 375 aa5.85□□□□□ -1.47
VPS29-208ENST00000550267 SMIM1B2RUZ4 78 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms