RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 A0A087WVE0 104 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 FXYD6-FXYD2A0A087WZ82 144 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 TRAV1-2A0A0B4J238 106 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 LINC00959A0A1B0GUT2 108 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 CRYM-AS1A6NIL9 109 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 ATOX1O00244 68 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 HMGN4O00479 90 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 GYPAP02724 150 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 IFI6P09912 130 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 SFTA3P0C7M3 94 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 C3orf79P0CE67 100 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 SMIM13P0DJ93 91 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 DEFB121Q5J5C9 76 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 ZNF818PQ6ZRF7 136 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 FAM167A-AS1Q96KT0 104 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 WFDC6Q9BQY6 131 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 ARL2-SNX15V9GYD0 113 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 KIF21AQ7Z4S6 1674 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 NUP188Q5SRE5 1749 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 USP24Q9UPU5 2620 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 USF3Q68DE3 2245 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 SYNE1Q8NF91 8797 aaKnown RBP0.29□□□□□ -2.36
VPS29-205ENST00000548539 MRC1P22897 1456 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 GAPVD1Q14C86 1478 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 NCOA2Q15596 1464 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 FYCO1Q9BQS8 1478 aa0.29□□□□□ -2.36
VPS29-205ENST00000548539 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.29□□□□□ -2.36
VPS29-205ENST00000548539 ABCC3O15438 1527 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 ASXL1Q8IXJ9 1541 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 CEP170BQ9Y4F5 1589 aaPredicted RBP0.28□□□□□ -2.36
VPS29-205ENST00000548539 TARBP1Q13395 1621 aaKnown RBP0.28□□□□□ -2.36
VPS29-205ENST00000548539 XRN1Q8IZH2 1706 aaKnown RBP0.28□□□□□ -2.36
VPS29-205ENST00000548539 A0A1B0GUL6 1792 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 RGPD8O14715 1765 aaPredicted RBP0.28□□□□□ -2.36
VPS29-205ENST00000548539 RGPD5Q99666 1765 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 PAPPA2Q9BXP8 1791 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 TRBV25-1A0A075B6N4 114 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 TRBV10-3A0A0K0K1G6 114 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 MYMXA0A1B0GTQ4 84 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 ZNF815PA8K554 130 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 UMAD1C9J7I0 102 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 M0R135 149 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 PPP1R17O96001 155 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 HMGN2P05204 90 aaKnown RBP0.28□□□□□ -2.36
VPS29-205ENST00000548539 ARMS2P0C7Q2 107 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 KRTDAPP60985 99 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 SPAG11BQ08648 103 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 C12orf73Q69YU5 71 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 SPAG11AQ6PDA7 123 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 C6orf201Q7Z4U5 140 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 LINC00643Q86TS7 51 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 DEFB107AQ8IZN7 70 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 COPS9Q8WXC6 57 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 S100ZQ8WXG8 99 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 SPRR4Q96PI1 79 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 AMELXQ99217 191 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 CYP4F30PQ9H0H9 118 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 PRO1854Q9UHT4 67 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 RABAC1Q9UI14 185 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 UBE2D4Q9Y2X8 147 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 LINC01558Q9Y6Z2 57 aa0.28□□□□□ -2.36
VPS29-205ENST00000548539 HFM1A2PYH4 1435 aa0.28□□□□□ -2.37
VPS29-205ENST00000548539 CD163L1Q9NR16 1453 aa0.28□□□□□ -2.37
VPS29-205ENST00000548539 CUX1P39880 1505 aa0.28□□□□□ -2.37
VPS29-205ENST00000548539 CLASP1Q7Z460 1538 aa0.28□□□□□ -2.37
VPS29-205ENST00000548539 CDC42BPGQ6DT37 1551 aa0.28□□□□□ -2.37
VPS29-205ENST00000548539 INO80Q9ULG1 1556 aaPredicted RBP0.28□□□□□ -2.37
VPS29-205ENST00000548539 LAMC1P11047 1609 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 TOP2BQ02880 1626 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 PAPPAQ13219 1627 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 ABCA9Q8IUA7 1624 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 ALKQ9UM73 1620 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 MROH2AA6NES4 1674 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 PREX1Q8TCU6 1659 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 DOT1LQ8TEK3 1739 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 COL14A1Q05707 1796 aaKnown RBP0.27□□□□□ -2.37
VPS29-205ENST00000548539 A0A087WWC5 75 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 A0A087WXM4 84 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 TRBV7-4A0A0J9YYF1 115 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 LOC285095A0A1B0GVY8 99 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 F8VRH5 84 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 G3V318 75 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 H3BVH4 76 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 COX8AP10176 69 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 CCL18P55774 89 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 ATP5EP56381 51 aaPredicted RBP0.27□□□□□ -2.37
VPS29-205ENST00000548539 SNRPFP62306 86 aaKnown RBP0.27□□□□□ -2.37
VPS29-205ENST00000548539 HAMPP81172 84 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 TMEM170BQ5T4T1 132 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 NCBP2-AS2Q69YL0 99 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 Q6JHZ5 121 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 WFDC9Q8NEX5 89 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 DYNLRB1Q9NP97 96 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 V9GYH0 126 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 PTPRQQ9UMZ3 2332 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 CNOT1A5YKK6 2376 aaKnown RBP0.27□□□□□ -2.37
VPS29-205ENST00000548539 ANKARQ7Z5J8 1434 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 C1orf167Q5SNV9 1468 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 SLIT1O75093 1534 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 DUOX2Q9NRD8 1548 aa0.27□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms