RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 ZANQ9Y493 2812 aa11.15□□□□□ -0.62
CUX1-211ENST00000546411 RELNP78509 3460 aa11.15□□□□□ -0.62
CUX1-211ENST00000546411 ZFHX4Q86UP3 3567 aa11.15□□□□□ -0.63
CUX1-211ENST00000546411 ASH1LQ9NR48 2969 aaKnown RBP11.14□□□□□ -0.63
CUX1-211ENST00000546411 F8WEM9 126 aa11.14□□□□□ -0.63
CUX1-211ENST00000546411 IGHV4-30-4P0DP06 118 aa11.14□□□□□ -0.63
CUX1-211ENST00000546411 C11orf45Q8TAV5 145 aa11.14□□□□□ -0.63
CUX1-211ENST00000546411 KLK9Q2XQG4 91 aa11.14□□□□□ -0.63
CUX1-211ENST00000546411 RETNQ9HD89 108 aa11.13□□□□□ -0.63
CUX1-211ENST00000546411 MIFP14174 115 aa11.13□□□□□ -0.63
CUX1-211ENST00000546411 SDIM1Q6ZPB5 146 aa11.13□□□□□ -0.63
CUX1-211ENST00000546411 DEFB131BA0A096LNP1 70 aa11.13□□□□□ -0.63
CUX1-211ENST00000546411 A0A1B0GX51 115 aa11.12□□□□□ -0.63
CUX1-211ENST00000546411 UBE2BP63146 152 aa11.12□□□□□ -0.63
CUX1-211ENST00000546411 CD164L2Q6UWJ8 174 aa11.12□□□□□ -0.63
CUX1-211ENST00000546411 Q8N2B8 174 aa11.11□□□□□ -0.63
CUX1-211ENST00000546411 DIRC1Q969H9 104 aa11.11□□□□□ -0.63
CUX1-211ENST00000546411 SPATA25Q9BR10 227 aa11.11□□□□□ -0.63
CUX1-211ENST00000546411 TRACP01848 142 aa11.11□□□□□ -0.63
CUX1-211ENST00000546411 NDUFV3P56181 108 aaKnown RBP11.11□□□□□ -0.63
CUX1-211ENST00000546411 RBM3P98179 157 aaKnown RBP11.1□□□□□ -0.63
CUX1-211ENST00000546411 KPRPQ5T749 579 aaPredicted RBP11.1□□□□□ -0.63
CUX1-211ENST00000546411 UNQ6190/PRO20217Q6UXQ8 127 aa11.1□□□□□ -0.63
CUX1-211ENST00000546411 ETDCA0A1B0GVM5 59 aa11.1□□□□□ -0.63
CUX1-211ENST00000546411 LINC00643Q86TS7 51 aa11.09□□□□□ -0.63
CUX1-211ENST00000546411 ZNF575Q86XF7 245 aa11.09□□□□□ -0.63
CUX1-211ENST00000546411 TMEM256-PLSCR3K7ERE1 68 aa11.08□□□□□ -0.64
CUX1-211ENST00000546411 SHISA2Q6UWI4 295 aa11.08□□□□□ -0.64
CUX1-211ENST00000546411 NOTCH1P46531 2555 aa11.08□□□□□ -0.64
CUX1-211ENST00000546411 SMCPP49901 116 aaPredicted RBP11.08□□□□□ -0.64
CUX1-211ENST00000546411 JMJD7-PLA2G4BH0Y9G9 81 aa11.08□□□□□ -0.64
CUX1-211ENST00000546411 IGKV2-24A0A0C4DH68 120 aa11.07□□□□□ -0.64
CUX1-211ENST00000546411 RMI2Q96E14 147 aa11.07□□□□□ -0.64
CUX1-211ENST00000546411 A0A087WZ39 114 aa11.07□□□□□ -0.64
CUX1-211ENST00000546411 hADV29S1A0JD25 119 aa11.07□□□□□ -0.64
CUX1-211ENST00000546411 CSDC2Q9Y534 153 aaKnown RBP11.06□□□□□ -0.64
CUX1-211ENST00000546411 UNC79Q9P2D8 2635 aa11.06□□□□□ -0.64
CUX1-211ENST00000546411 CYSRT1A8MQ03 144 aa11.06□□□□□ -0.64
CUX1-211ENST00000546411 FSHBP01225 129 aa11.05□□□□□ -0.64
CUX1-211ENST00000546411 TRAV23DV6A0A075B6W5 121 aa11.05□□□□□ -0.64
CUX1-211ENST00000546411 KIR2DL5BQ8NHK3 375 aa11.05□□□□□ -0.64
CUX1-211ENST00000546411 NANOS2P60321 138 aaKnown RBP11.04□□□□□ -0.64
CUX1-211ENST00000546411 C16orf95Q9H693 158 aa11.04□□□□□ -0.64
CUX1-211ENST00000546411 SETXQ7Z333 2677 aaKnown RBP11.04□□□□□ -0.64
CUX1-211ENST00000546411 COX7BP24311 80 aa11.04□□□□□ -0.64
CUX1-211ENST00000546411 FHL3Q13643 280 aa11.04□□□□□ -0.64
CUX1-211ENST00000546411 LELP1Q5T871 98 aa11.04□□□□□ -0.64
CUX1-211ENST00000546411 Q6ZQY7 126 aa11.04□□□□□ -0.64
CUX1-211ENST00000546411 SCXQ7RTU7 201 aa11.04□□□□□ -0.64
CUX1-211ENST00000546411 C6orf223Q8N319 242 aa11.03□□□□□ -0.64
CUX1-211ENST00000546411 CRYBG3Q68DQ2 2970 aa11.03□□□□□ -0.64
CUX1-211ENST00000546411 A0A096LNT2 108 aa11.03□□□□□ -0.64
CUX1-211ENST00000546411 IGKV2-28A0A075B6P5 120 aa11.03□□□□□ -0.64
CUX1-211ENST00000546411 IGKV2D-28P01615 120 aa11.03□□□□□ -0.64
CUX1-211ENST00000546411 A0A087WYN8 130 aa11.02□□□□□ -0.65
CUX1-211ENST00000546411 Q8IZM0 81 aa11.02□□□□□ -0.65
CUX1-211ENST00000546411 LINC00337Q8N6G1 96 aa11.02□□□□□ -0.65
CUX1-211ENST00000546411 UTP20O75691 2785 aaKnown RBP11.02□□□□□ -0.65
CUX1-211ENST00000546411 PRO0461Q9UI25 63 aa11.01□□□□□ -0.65
CUX1-211ENST00000546411 A8MTW9 85 aa11.01□□□□□ -0.65
CUX1-211ENST00000546411 STAB1Q9NY15 2570 aa11□□□□□ -0.65
CUX1-211ENST00000546411 Q6ZTC4 211 aa11□□□□□ -0.65
CUX1-211ENST00000546411 Q8N3U1 123 aa11□□□□□ -0.65
CUX1-211ENST00000546411 A0A0J9YWU9 116 aa11□□□□□ -0.65
CUX1-211ENST00000546411 SOSTDC1Q6X4U4 206 aa11□□□□□ -0.65
CUX1-211ENST00000546411 NBEAL1Q6ZS30 2694 aa10.99□□□□□ -0.65
CUX1-211ENST00000546411 EIF4EBP3O60516 100 aaPredicted RBP10.99□□□□□ -0.65
CUX1-211ENST00000546411 CELA1Q9UNI1 258 aa10.99□□□□□ -0.65
CUX1-211ENST00000546411 IGHV3OR16-9A0A0B4J2B5 98 aa10.99□□□□□ -0.65
CUX1-211ENST00000546411 IGLV5-39A0A0G2JS06 123 aa10.99□□□□□ -0.65
CUX1-211ENST00000546411 ATOX1O00244 68 aa10.99□□□□□ -0.65
CUX1-211ENST00000546411 NREPQ16612 68 aa10.98□□□□□ -0.65
CUX1-211ENST00000546411 ITPR2Q14571 2701 aa10.98□□□□□ -0.65
CUX1-211ENST00000546411 CDIP1Q9H305 208 aa10.98□□□□□ -0.65
CUX1-211ENST00000546411 COL6A5A8TX70 2615 aa10.98□□□□□ -0.65
CUX1-211ENST00000546411 SYCNQ0VAF6 134 aa10.97□□□□□ -0.65
CUX1-211ENST00000546411 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.97□□□□□ -0.65
CUX1-211ENST00000546411 ENHOQ6UWT2 76 aa10.97□□□□□ -0.65
CUX1-211ENST00000546411 WFDC9Q8NEX5 89 aa10.97□□□□□ -0.65
CUX1-211ENST00000546411 FUSP35637 526 aaKnown RBP eCLIP10.96□□□□□ -0.651e-7■■■■□ 22.5
CUX1-211ENST00000546411 CCDC179H3BU77 68 aa10.96□□□□□ -0.66
CUX1-211ENST00000546411 RPL28P46779 137 aaKnown RBP10.96□□□□□ -0.66
CUX1-211ENST00000546411 HIGD2AQ9BW72 106 aa10.95□□□□□ -0.66
CUX1-211ENST00000546411 A0A096LNI7 61 aa10.95□□□□□ -0.66
CUX1-211ENST00000546411 WFDC10BQ8IUB3 73 aa10.95□□□□□ -0.66
CUX1-211ENST00000546411 FAM19A5Q7Z5A7 132 aaPredicted RBP10.94□□□□□ -0.66
CUX1-211ENST00000546411 DCHS2Q6V1P9 2916 aa10.93□□□□□ -0.66
CUX1-211ENST00000546411 RPL37AP8A6NKH3 93 aa10.93□□□□□ -0.66
CUX1-211ENST00000546411 NF1P21359 2839 aa10.93□□□□□ -0.66
CUX1-211ENST00000546411 UPK3BQ9BT76 320 aa10.93□□□□□ -0.66
CUX1-211ENST00000546411 HRNRQ86YZ3 2850 aaPredicted RBP10.92□□□□□ -0.66
CUX1-211ENST00000546411 TRBV10-3A0A0K0K1G6 114 aa10.92□□□□□ -0.66
CUX1-211ENST00000546411 A0A1B0GUV1 79 aa10.92□□□□□ -0.66
CUX1-211ENST00000546411 A0A087WVE0 104 aa10.91□□□□□ -0.66
CUX1-211ENST00000546411 X6R8D5 127 aa10.91□□□□□ -0.66
CUX1-211ENST00000546411 C20orf197Q8N268 126 aa10.9□□□□□ -0.66
CUX1-211ENST00000546411 IGLV5-45A0A087WSX0 123 aa10.9□□□□□ -0.66
CUX1-211ENST00000546411 C3orf84H3BNL1 204 aa10.9□□□□□ -0.66
CUX1-211ENST00000546411 LITAFQ99732 161 aa10.9□□□□□ -0.66
CUX1-211ENST00000546411 FAM218AQ96MZ4 157 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms