RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 LRRK2Q5S007 2527 aa6.07□□□□□ -1.44
TDP1-204ENST00000545686 PIEZO1Q92508 2521 aa6.07□□□□□ -1.44
TDP1-204ENST00000545686 SERP2Q8N6R1 65 aa6.07□□□□□ -1.44
TDP1-204ENST00000545686 C16orf95Q9H693 158 aa6.07□□□□□ -1.44
TDP1-204ENST00000545686 PTPN13Q12923 2485 aa6.06□□□□□ -1.44
TDP1-204ENST00000545686 J3KT08 172 aa6.06□□□□□ -1.44
TDP1-204ENST00000545686 FAM208BQ5VWN6 2430 aa6.06□□□□□ -1.44
TDP1-204ENST00000545686 NAV2Q8IVL1 2488 aa6.06□□□□□ -1.44
TDP1-204ENST00000545686 IGKV3D-7A0A0C4DH55 119 aa6.06□□□□□ -1.44
TDP1-204ENST00000545686 TMEM256-PLSCR3K7ERE1 68 aa6.06□□□□□ -1.44
TDP1-204ENST00000545686 CFAP161Q6P656 301 aa6.06□□□□□ -1.44
TDP1-204ENST00000545686 ESM1Q9NQ30 184 aa6.06□□□□□ -1.44
TDP1-204ENST00000545686 UBR5O95071 2799 aaPredicted RBP6.05□□□□□ -1.44
TDP1-204ENST00000545686 XCL1P47992 114 aa6.05□□□□□ -1.44
TDP1-204ENST00000545686 NANOS2P60321 138 aaKnown RBP6.05□□□□□ -1.44
TDP1-204ENST00000545686 RPS28P62857 69 aaKnown RBP6.05□□□□□ -1.44
TDP1-204ENST00000545686 Q8N814 137 aa6.05□□□□□ -1.44
TDP1-204ENST00000545686 EPG5Q9HCE0 2579 aa6.05□□□□□ -1.44
TDP1-204ENST00000545686 CENPEQ02224 2701 aa6.05□□□□□ -1.44
TDP1-204ENST00000545686 JMJD1CQ15652 2540 aa6.05□□□□□ -1.44
TDP1-204ENST00000545686 SLPIP03973 132 aa6.05□□□□□ -1.44
TDP1-204ENST00000545686 GYPEP15421 78 aa6.05□□□□□ -1.44
TDP1-204ENST00000545686 C11orf68Q9H3H3 251 aaKnown RBP6.05□□□□□ -1.44
TDP1-204ENST00000545686 USP17L23D6RBM5 183 aa6.04□□□□□ -1.44
TDP1-204ENST00000545686 TMEM258P61165 79 aa6.04□□□□□ -1.44
TDP1-204ENST00000545686 IGHV4-28A0A0C4DH34 117 aa6.04□□□□□ -1.44
TDP1-204ENST00000545686 RNASE1P07998 156 aaKnown RBP6.04□□□□□ -1.44
TDP1-204ENST00000545686 LINC01006Q8NI28 216 aa6.04□□□□□ -1.44
TDP1-204ENST00000545686 MUC7Q8TAX7 377 aa6.04□□□□□ -1.44
TDP1-204ENST00000545686 hADV29S1A0JD25 119 aa6.03□□□□□ -1.44
TDP1-204ENST00000545686 PLA2G2AP14555 144 aa6.03□□□□□ -1.44
TDP1-204ENST00000545686 CD164L2Q6UWJ8 174 aa6.03□□□□□ -1.44
TDP1-204ENST00000545686 UPK3BQ9BT76 320 aa6.03□□□□□ -1.44
TDP1-204ENST00000545686 PRO0255Q9UI72 69 aa6.03□□□□□ -1.44
TDP1-204ENST00000545686 NBPF19A0A087WUL8 3843 aa6.03□□□□□ -1.44
TDP1-204ENST00000545686 ITPR3Q14573 2671 aa6.03□□□□□ -1.44
TDP1-204ENST00000545686 TRBV10-3A0A0K0K1G6 114 aa6.03□□□□□ -1.44
TDP1-204ENST00000545686 KIAA0087Q14695 138 aa6.03□□□□□ -1.44
TDP1-204ENST00000545686 LYPD5Q6UWN5 251 aa6.03□□□□□ -1.44
TDP1-204ENST00000545686 ABCA12Q86UK0 2595 aa6.02□□□□□ -1.44
TDP1-204ENST00000545686 SMIM9A6NGZ8 99 aa6.02□□□□□ -1.45
TDP1-204ENST00000545686 DEFB130BP0DP73 79 aa6.02□□□□□ -1.45
TDP1-204ENST00000545686 DEFB130AP0DP74 79 aa6.02□□□□□ -1.45
TDP1-204ENST00000545686 ZNF469Q96JG9 3925 aaPredicted RBP6.02□□□□□ -1.45
TDP1-204ENST00000545686 A0A087WVE0 104 aa6.02□□□□□ -1.45
TDP1-204ENST00000545686 NF1P21359 2839 aa6.01□□□□□ -1.45
TDP1-204ENST00000545686 SONP18583 2426 aaKnown RBP6□□□□□ -1.45
TDP1-204ENST00000545686 LYRM9A8MSI8 78 aa6□□□□□ -1.45
TDP1-204ENST00000545686 H3BQ85 93 aa6□□□□□ -1.45
TDP1-204ENST00000545686 CLPSL2Q6UWE3 100 aa6□□□□□ -1.45
TDP1-204ENST00000545686 CHCHD10Q8WYQ3 142 aaPredicted RBP6□□□□□ -1.45
TDP1-204ENST00000545686 UBL5Q9BZL1 73 aa6□□□□□ -1.45
TDP1-204ENST00000545686 X6R8D5 127 aa6□□□□□ -1.45
TDP1-204ENST00000545686 APCP25054 2843 aa6□□□□□ -1.45
TDP1-204ENST00000545686 ZNF462Q96JM2 2506 aa6□□□□□ -1.45
TDP1-204ENST00000545686 LOC110117498A0A087WWA1 95 aa5.99□□□□□ -1.45
TDP1-204ENST00000545686 ZNF561-AS1K7EIQ3 104 aa5.99□□□□□ -1.45
TDP1-204ENST00000545686 PRB1P04280 392 aa5.99□□□□□ -1.45
TDP1-204ENST00000545686 LINC00575Q6W349 94 aa5.99□□□□□ -1.45
TDP1-204ENST00000545686 LINC00269Q8N2A0 174 aa5.99□□□□□ -1.45
TDP1-204ENST00000545686 BBC3Q96PG8 261 aaPredicted RBP5.99□□□□□ -1.45
TDP1-204ENST00000545686 CYSTM1Q9H1C7 97 aa5.99□□□□□ -1.45
TDP1-204ENST00000545686 BCE1O60756 84 aa5.99□□□□□ -1.45
TDP1-204ENST00000545686 PRR3P79522 188 aaKnown RBP5.99□□□□□ -1.45
TDP1-204ENST00000545686 C6orf99Q4VX62 202 aa5.99□□□□□ -1.45
TDP1-204ENST00000545686 WFDC11Q8NEX6 87 aa5.99□□□□□ -1.45
TDP1-204ENST00000545686 LOC107984640A0A0U1RRK4 108 aa5.98□□□□□ -1.45
TDP1-204ENST00000545686 NDUFC2-KCTD14E9PQ53 114 aa5.98□□□□□ -1.45
TDP1-204ENST00000545686 NIPBLQ6KC79 2804 aaeCLIP5.98□□□□□ -1.45
TDP1-204ENST00000545686 REG3AQ06141 175 aa5.98□□□□□ -1.45
TDP1-204ENST00000545686 FAM19A5Q7Z5A7 132 aaPredicted RBP5.98□□□□□ -1.45
TDP1-204ENST00000545686 C6orf223Q8N319 242 aa5.98□□□□□ -1.45
TDP1-204ENST00000545686 ZNF843Q8N446 348 aa5.98□□□□□ -1.45
TDP1-204ENST00000545686 FLNAP21333 2647 aaKnown RBP5.97□□□□□ -1.45
TDP1-204ENST00000545686 GHRHP01286 108 aa5.97□□□□□ -1.45
TDP1-204ENST00000545686 OXLD1Q5BKU9 147 aa5.97□□□□□ -1.45
TDP1-204ENST00000545686 Q6ZQT0 140 aa5.97□□□□□ -1.45
TDP1-204ENST00000545686 ANGP03950 147 aaKnown RBP5.97□□□□□ -1.45
TDP1-204ENST00000545686 RBM3P98179 157 aaKnown RBP5.97□□□□□ -1.45
TDP1-204ENST00000545686 KRTAP1-1Q07627 177 aa5.97□□□□□ -1.45
TDP1-204ENST00000545686 DPH3Q96FX2 82 aa5.97□□□□□ -1.45
TDP1-204ENST00000545686 A0A0J9YWU9 116 aa5.96□□□□□ -1.46
TDP1-204ENST00000545686 IGHV4-30-4P0DP06 118 aa5.96□□□□□ -1.46
TDP1-204ENST00000545686 PDE6GP18545 87 aa5.96□□□□□ -1.46
TDP1-204ENST00000545686 IGLV6-57P01721 117 aa5.96□□□□□ -1.46
TDP1-204ENST00000545686 HILS1P60008 231 aa5.96□□□□□ -1.46
TDP1-204ENST00000545686 ENHOQ6UWT2 76 aa5.96□□□□□ -1.46
TDP1-204ENST00000545686 Q8NDZ9 215 aa5.96□□□□□ -1.46
TDP1-204ENST00000545686 USP24Q9UPU5 2620 aa5.96□□□□□ -1.46
TDP1-204ENST00000545686 A0A096LPF7 62 aa5.95□□□□□ -1.46
TDP1-204ENST00000545686 C9orf116Q5BN46 136 aaPredicted RBP5.95□□□□□ -1.46
TDP1-204ENST00000545686 TRAV23DV6A0A075B6W5 121 aa5.94□□□□□ -1.46
TDP1-204ENST00000545686 GVQW2A0A096LPI5 108 aaPredicted RBP5.94□□□□□ -1.46
TDP1-204ENST00000545686 SPAG11BQ08648 103 aa5.94□□□□□ -1.46
TDP1-204ENST00000545686 C5orf47Q569G3 176 aa5.94□□□□□ -1.46
TDP1-204ENST00000545686 C9orf66Q5T8R8 295 aa5.94□□□□□ -1.46
TDP1-204ENST00000545686 FAM19A1Q7Z5A9 133 aa5.94□□□□□ -1.46
TDP1-204ENST00000545686 LINC00482Q8N8I6 264 aa5.94□□□□□ -1.46
TDP1-204ENST00000545686 IGLV10-54A0A075B6I4 117 aa5.94□□□□□ -1.46
TDP1-204ENST00000545686 CUBNO60494 3623 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms