RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 RBMY1FQ15415 496 aaKnown RBP3.76□□□□□ -1.81
USP28-213ENST00000544967 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.76□□□□□ -1.81
USP28-213ENST00000544967 RBM12B-AS1Q9P1G2 102 aa3.76□□□□□ -1.81
USP28-213ENST00000544967 H3BUX3 64 aa3.76□□□□□ -1.81
USP28-213ENST00000544967 LINC01006Q8NI28 216 aa3.76□□□□□ -1.81
USP28-213ENST00000544967 ZNF625Q96I27 306 aaPredicted RBP3.76□□□□□ -1.81
USP28-213ENST00000544967 USMG5Q96IX5 58 aa3.76□□□□□ -1.81
USP28-213ENST00000544967 KNCNA6PVL3 124 aa3.76□□□□□ -1.81
USP28-213ENST00000544967 H3BQ85 93 aa3.76□□□□□ -1.81
USP28-213ENST00000544967 PAX4O43316 350 aa3.76□□□□□ -1.81
USP28-213ENST00000544967 ERC2-IT1O76042 136 aa3.76□□□□□ -1.81
USP28-213ENST00000544967 FHL2Q14192 279 aa3.76□□□□□ -1.81
USP28-213ENST00000544967 KPRPQ5T749 579 aaPredicted RBP3.76□□□□□ -1.81
USP28-213ENST00000544967 Q75L30 129 aa3.76□□□□□ -1.81
USP28-213ENST00000544967 LINC00467Q9BRT7 94 aa3.76□□□□□ -1.81
USP28-213ENST00000544967 TMEM243Q9BU79 118 aa3.76□□□□□ -1.81
USP28-213ENST00000544967 S4R3C0 116 aa3.76□□□□□ -1.81
USP28-213ENST00000544967 WNK2Q9Y3S1 2297 aa3.75□□□□□ -1.81
USP28-213ENST00000544967 CCDC168Q8NDH2 2452 aa3.75□□□□□ -1.81
USP28-213ENST00000544967 H7BZZ5 65 aa3.75□□□□□ -1.81
USP28-213ENST00000544967 XCL1P47992 114 aa3.75□□□□□ -1.81
USP28-213ENST00000544967 PRB3Q04118 309 aaPredicted RBP3.75□□□□□ -1.81
USP28-213ENST00000544967 CLEC19AQ6UXS0 136 aa3.75□□□□□ -1.81
USP28-213ENST00000544967 CHCHD7Q9BUK0 85 aa3.75□□□□□ -1.81
USP28-213ENST00000544967 LINC00846Q9NV44 126 aa3.75□□□□□ -1.81
USP28-213ENST00000544967 XCL2Q9UBD3 114 aa3.75□□□□□ -1.81
USP28-213ENST00000544967 IGHV3-23P01764 117 aa3.75□□□□□ -1.81
USP28-213ENST00000544967 NIPBLQ6KC79 2804 aaeCLIP3.74□□□□□ -1.81
USP28-213ENST00000544967 IGHV1OR15-1A0A075B7D0 117 aa3.74□□□□□ -1.81
USP28-213ENST00000544967 A8MTW9 85 aa3.74□□□□□ -1.81
USP28-213ENST00000544967 CRPP02741 224 aa3.74□□□□□ -1.81
USP28-213ENST00000544967 PRB4P10163 310 aaPredicted RBP3.74□□□□□ -1.81
USP28-213ENST00000544967 OPRPNQ99935 248 aaPredicted RBP3.74□□□□□ -1.81
USP28-213ENST00000544967 TRRAPQ9Y4A5 3859 aa3.74□□□□□ -1.81
USP28-213ENST00000544967 IGHV3-64A0A075B6Q5 118 aa3.74□□□□□ -1.81
USP28-213ENST00000544967 PLAC8L1A1L4L8 177 aa3.74□□□□□ -1.81
USP28-213ENST00000544967 LYRM9A8MSI8 78 aa3.74□□□□□ -1.81
USP28-213ENST00000544967 ATP6V0E1O15342 81 aa3.74□□□□□ -1.81
USP28-213ENST00000544967 FAM218AQ96MZ4 157 aa3.74□□□□□ -1.81
USP28-213ENST00000544967 ACANP16112 2415 aa3.74□□□□□ -1.81
USP28-213ENST00000544967 SOSTDC1Q6X4U4 206 aa3.74□□□□□ -1.81
USP28-213ENST00000544967 C19orf73Q9NVV2 129 aa3.74□□□□□ -1.81
USP28-213ENST00000544967 TENM1Q9UKZ4 2725 aa3.73□□□□□ -1.81
USP28-213ENST00000544967 MUC4Q99102 2169 aa3.73□□□□□ -1.81
USP28-213ENST00000544967 TRBV12-3P01733 135 aa3.73□□□□□ -1.81
USP28-213ENST00000544967 UNQ9165/PRO28630Q6UXU0 137 aa3.73□□□□□ -1.81
USP28-213ENST00000544967 WFDC9Q8NEX5 89 aa3.73□□□□□ -1.81
USP28-213ENST00000544967 HIVEP2P31629 2446 aa3.73□□□□□ -1.81
USP28-213ENST00000544967 SMIM1B2RUZ4 78 aa3.72□□□□□ -1.81
USP28-213ENST00000544967 ECSCRQ19T08 205 aa3.72□□□□□ -1.81
USP28-213ENST00000544967 C4orf3Q8WVX3 66 aa3.72□□□□□ -1.81
USP28-213ENST00000544967 ORMDL1Q9P0S3 153 aa3.72□□□□□ -1.81
USP28-213ENST00000544967 PLXNB1O43157 2135 aa3.72□□□□□ -1.81
USP28-213ENST00000544967 CDKN2A-AS1Q9UH64 79 aa3.72□□□□□ -1.81
USP28-213ENST00000544967 IBA57-AS1B1ANH7 110 aa3.72□□□□□ -1.81
USP28-213ENST00000544967 PDE6GP18545 87 aa3.72□□□□□ -1.81
USP28-213ENST00000544967 BLCAPP62952 87 aa3.72□□□□□ -1.81
USP28-213ENST00000544967 CXCL6P80162 114 aa3.72□□□□□ -1.81
USP28-213ENST00000544967 Q6ZRU5 148 aa3.72□□□□□ -1.81
USP28-213ENST00000544967 DYNC2H1Q8NCM8 4307 aaKnown RBP3.71□□□□□ -1.81
USP28-213ENST00000544967 LOC110117498A0A087WWA1 95 aa3.71□□□□□ -1.82
USP28-213ENST00000544967 IGHV3-66A0A0C4DH42 116 aa3.71□□□□□ -1.82
USP28-213ENST00000544967 IGKV3D-7A0A0C4DH55 119 aa3.71□□□□□ -1.82
USP28-213ENST00000544967 IGHV3-35A0A0C4DH35 117 aa3.71□□□□□ -1.82
USP28-213ENST00000544967 TMEM256-PLSCR3K7ERE1 68 aa3.71□□□□□ -1.82
USP28-213ENST00000544967 IGHV3-53P01767 116 aa3.71□□□□□ -1.82
USP28-213ENST00000544967 FP248Q71RG6 208 aaPredicted RBP3.71□□□□□ -1.82
USP28-213ENST00000544967 BRK1Q8WUW1 75 aa3.71□□□□□ -1.82
USP28-213ENST00000544967 UBL5Q9BZL1 73 aa3.71□□□□□ -1.82
USP28-213ENST00000544967 C14orf132Q9NPU4 83 aa3.71□□□□□ -1.82
USP28-213ENST00000544967 DNAH7Q8WXX0 4024 aa3.71□□□□□ -1.82
USP28-213ENST00000544967 LINC00242Q5T6M2 205 aa3.71□□□□□ -1.82
USP28-213ENST00000544967 TRAV12-3A0A0B4J271 114 aa3.7□□□□□ -1.82
USP28-213ENST00000544967 EGFEM1PQ0D2K5 195 aa3.7□□□□□ -1.82
USP28-213ENST00000544967 FAM74A4Q5TZK3 123 aa3.7□□□□□ -1.82
USP28-213ENST00000544967 SS18Q15532 418 aa3.7□□□□□ -1.82
USP28-213ENST00000544967 MTORP42345 2549 aa3.7□□□□□ -1.82
USP28-213ENST00000544967 IGKV2-28A0A075B6P5 120 aa3.69□□□□□ -1.82
USP28-213ENST00000544967 A0A087WVE0 104 aa3.69□□□□□ -1.82
USP28-213ENST00000544967 IGKV2D-28P01615 120 aa3.69□□□□□ -1.82
USP28-213ENST00000544967 C20orf197Q8N268 126 aa3.69□□□□□ -1.82
USP28-213ENST00000544967 SMIM11BQ8TCY0 68 aa3.69□□□□□ -1.82
USP28-213ENST00000544967 RHPN1-AS1Q9BWJ2 59 aa3.69□□□□□ -1.82
USP28-213ENST00000544967 IGHV3OR16-12A0A075B7B8 117 aa3.69□□□□□ -1.82
USP28-213ENST00000544967 IGHV3OR16-8A0A075B7F1 116 aa3.69□□□□□ -1.82
USP28-213ENST00000544967 TRBV7-6A0A0J9YX20 115 aa3.69□□□□□ -1.82
USP28-213ENST00000544967 TRBV10-1A0A0K0K1A3 114 aa3.69□□□□□ -1.82
USP28-213ENST00000544967 SNRPD3P62318 126 aaKnown RBP3.69□□□□□ -1.82
USP28-213ENST00000544967 LINC00337Q8N6G1 96 aa3.69□□□□□ -1.82
USP28-213ENST00000544967 A0A087WYN8 130 aa3.69□□□□□ -1.82
USP28-213ENST00000544967 C9orf66Q5T8R8 295 aa3.69□□□□□ -1.82
USP28-213ENST00000544967 PRR15Q8IV56 129 aa3.69□□□□□ -1.82
USP28-213ENST00000544967 MUC7Q8TAX7 377 aa3.69□□□□□ -1.82
USP28-213ENST00000544967 KRTAP3-3Q9BYR6 98 aa3.69□□□□□ -1.82
USP28-213ENST00000544967 KRTAP3-2Q9BYR7 98 aa3.69□□□□□ -1.82
USP28-213ENST00000544967 SND1-IT1Q9HBX3 110 aa3.69□□□□□ -1.82
USP28-213ENST00000544967 DNAH9Q9NYC9 4486 aa3.68□□□□□ -1.82
USP28-213ENST00000544967 IGKV2-29A2NJV5 120 aaPredicted RBP3.68□□□□□ -1.82
USP28-213ENST00000544967 K7EQG2 157 aa3.68□□□□□ -1.82
USP28-213ENST00000544967 LY6EQ16553 131 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms