RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 SND1-IT1Q9HBX3 110 aa12.44□□□□□ -0.42
VIM-209ENST00000544301 MIFP14174 115 aa12.43□□□□□ -0.42
VIM-209ENST00000544301 IGKV2-28A0A075B6P5 120 aa12.43□□□□□ -0.42
VIM-209ENST00000544301 IGKV2D-28P01615 120 aa12.43□□□□□ -0.42
VIM-209ENST00000544301 C6orf226Q5I0X4 101 aa12.43□□□□□ -0.42
VIM-209ENST00000544301 CCL18P55774 89 aa12.42□□□□□ -0.42
VIM-209ENST00000544301 CRPP02741 224 aa12.41□□□□□ -0.42
VIM-209ENST00000544301 ATP5G1P05496 136 aa12.41□□□□□ -0.42
VIM-209ENST00000544301 PFN2P35080 140 aa12.41□□□□□ -0.42
VIM-209ENST00000544301 LINC00337Q8N6G1 96 aa12.41□□□□□ -0.42
VIM-209ENST00000544301 C11orf68Q9H3H3 251 aaKnown RBP12.41□□□□□ -0.42
VIM-209ENST00000544301 TRAV26-1A0A087WT03 109 aa12.41□□□□□ -0.42
VIM-209ENST00000544301 LINC01561Q8N1V8 128 aa12.41□□□□□ -0.42
VIM-209ENST00000544301 LINC00269Q8N2A0 174 aa12.41□□□□□ -0.42
VIM-209ENST00000544301 WIPF1O43516 503 aa12.4□□□□□ -0.42
VIM-209ENST00000544301 Q8IZM0 81 aa12.4□□□□□ -0.42
VIM-209ENST00000544301 IGHV4-30-4P0DP06 118 aa12.4□□□□□ -0.43
VIM-209ENST00000544301 RPL28P46779 137 aaKnown RBP12.39□□□□□ -0.43
VIM-209ENST00000544301 Q8N3U1 123 aa12.39□□□□□ -0.43
VIM-209ENST00000544301 SPART-AS1P0CW21 52 aa12.38□□□□□ -0.43
VIM-209ENST00000544301 TRAV8-4A0A0B4J246 113 aa12.37□□□□□ -0.43
VIM-209ENST00000544301 TRACP01848 142 aa12.37□□□□□ -0.43
VIM-209ENST00000544301 FAM218AQ96MZ4 157 aa12.37□□□□□ -0.43
VIM-209ENST00000544301 ANGP03950 147 aaKnown RBP12.37□□□□□ -0.43
VIM-209ENST00000544301 DEFB121Q5J5C9 76 aa12.37□□□□□ -0.43
VIM-209ENST00000544301 CD164L2Q6UWJ8 174 aa12.37□□□□□ -0.43
VIM-209ENST00000544301 CHCHD10Q8WYQ3 142 aaPredicted RBP12.36□□□□□ -0.43
VIM-209ENST00000544301 HTN3P15516 51 aa12.35□□□□□ -0.43
VIM-209ENST00000544301 REG3AQ06141 175 aa12.35□□□□□ -0.43
VIM-209ENST00000544301 MRPL23Q16540 153 aaKnown RBP12.35□□□□□ -0.43
VIM-209ENST00000544301 SMIM11BQ8TCY0 68 aa12.34□□□□□ -0.43
VIM-209ENST00000544301 IGLV10-54A0A075B6I4 117 aa12.34□□□□□ -0.43
VIM-209ENST00000544301 KIAA0087Q14695 138 aa12.34□□□□□ -0.43
VIM-209ENST00000544301 CKS1BP61024 79 aa12.32□□□□□ -0.44
VIM-209ENST00000544301 LELP1Q5T871 98 aa12.32□□□□□ -0.44
VIM-209ENST00000544301 BAALC-AS2P0C853 105 aa12.31□□□□□ -0.44
VIM-209ENST00000544301 MALP21145 153 aa12.3□□□□□ -0.44
VIM-209ENST00000544301 CFAP161Q6P656 301 aa12.29□□□□□ -0.44
VIM-209ENST00000544301 CXCL5P42830 114 aa12.29□□□□□ -0.44
VIM-209ENST00000544301 C22orf24Q9Y442 160 aa12.29□□□□□ -0.44
VIM-209ENST00000544301 FAM240AA0A1B0GVK7 77 aa12.28□□□□□ -0.44
VIM-209ENST00000544301 OR13C6PQ8NH95 151 aa12.28□□□□□ -0.44
VIM-209ENST00000544301 Q9HAA7 133 aa12.28□□□□□ -0.44
VIM-209ENST00000544301 OXLD1Q5BKU9 147 aa12.27□□□□□ -0.45
VIM-209ENST00000544301 A0A087WYN8 130 aa12.26□□□□□ -0.45
VIM-209ENST00000544301 H0YGX0 51 aa12.26□□□□□ -0.45
VIM-209ENST00000544301 COX17Q14061 63 aa12.26□□□□□ -0.45
VIM-209ENST00000544301 SNCGO76070 127 aa12.26□□□□□ -0.45
VIM-209ENST00000544301 KRTAP10-11P60412 298 aa12.26□□□□□ -0.45
VIM-209ENST00000544301 C15orf53Q8NAA6 179 aa12.25□□□□□ -0.45
VIM-209ENST00000544301 PRR34Q9NV39 138 aa12.25□□□□□ -0.45
VIM-209ENST00000544301 A0A1B0GV72 72 aa12.24□□□□□ -0.45
VIM-209ENST00000544301 C9orf116Q5BN46 136 aaPredicted RBP12.24□□□□□ -0.45
VIM-209ENST00000544301 LYPD5Q6UWN5 251 aa12.23□□□□□ -0.45
VIM-209ENST00000544301 RETNQ9HD89 108 aa12.23□□□□□ -0.45
VIM-209ENST00000544301 KLK12Q9UKR0 248 aa12.23□□□□□ -0.45
VIM-209ENST00000544301 KLK5Q9Y337 293 aaPredicted RBP12.23□□□□□ -0.45
VIM-209ENST00000544301 PRR3P79522 188 aaKnown RBP12.22□□□□□ -0.45
VIM-209ENST00000544301 NDUFC2O95298 119 aa12.22□□□□□ -0.45
VIM-209ENST00000544301 DNAL4O96015 105 aa12.22□□□□□ -0.45
VIM-209ENST00000544301 ENHOQ6UWT2 76 aa12.22□□□□□ -0.45
VIM-209ENST00000544301 CMYA5Q8N3K9 4069 aa12.22□□□□□ -0.45
VIM-209ENST00000544301 C6orf223Q8N319 242 aa12.2□□□□□ -0.46
VIM-209ENST00000544301 F8P00451 2351 aa12.2□□□□□ -0.46
VIM-209ENST00000544301 SPAG11BQ08648 103 aa12.2□□□□□ -0.46
VIM-209ENST00000544301 GAGE2BQ13066 116 aa12.2□□□□□ -0.46
VIM-209ENST00000544301 GAGE2EQ4V326 116 aa12.2□□□□□ -0.46
VIM-209ENST00000544301 TTC32Q5I0X7 151 aa12.2□□□□□ -0.46
VIM-209ENST00000544301 GAGE2DQ9UEU5 116 aa12.2□□□□□ -0.46
VIM-209ENST00000544301 LECT2O14960 151 aa12.19□□□□□ -0.46
VIM-209ENST00000544301 NANOS2P60321 138 aaKnown RBP12.19□□□□□ -0.46
VIM-209ENST00000544301 C10orf25Q5T742 122 aa12.19□□□□□ -0.46
VIM-209ENST00000544301 ACYP1P07311 99 aa12.19□□□□□ -0.46
VIM-209ENST00000544301 UNQ6190/PRO20217Q6UXQ8 127 aa12.19□□□□□ -0.46
VIM-209ENST00000544301 ANK2Q01484 3957 aa12.18□□□□□ -0.46
VIM-209ENST00000544301 KRTAP24-1Q3LI83 254 aa12.18□□□□□ -0.46
VIM-209ENST00000544301 EGFEM1PQ0D2K5 195 aa12.17□□□□□ -0.46
VIM-209ENST00000544301 H3BNG1 76 aa12.17□□□□□ -0.46
VIM-209ENST00000544301 Q6Q795 121 aa12.17□□□□□ -0.46
VIM-209ENST00000544301 LINC00526Q96FQ7 95 aa12.17□□□□□ -0.46
VIM-209ENST00000544301 INAFM2P0DMQ5 153 aa12.16□□□□□ -0.46
VIM-209ENST00000544301 KPRPQ5T749 579 aaPredicted RBP12.16□□□□□ -0.46
VIM-209ENST00000544301 Q8NDZ9 215 aa12.16□□□□□ -0.46
VIM-209ENST00000544301 CYSRT1A8MQ03 144 aa12.16□□□□□ -0.46
VIM-209ENST00000544301 A0A0J9YWU9 116 aa12.15□□□□□ -0.46
VIM-209ENST00000544301 Q6ZTC4 211 aa12.15□□□□□ -0.46
VIM-209ENST00000544301 TMEM126AQ9H061 195 aa12.15□□□□□ -0.46
VIM-209ENST00000544301 PKD1L1Q8TDX9 2849 aa12.15□□□□□ -0.46
VIM-209ENST00000544301 WFDC10BQ8IUB3 73 aa12.14□□□□□ -0.47
VIM-209ENST00000544301 SLPIP03973 132 aa12.13□□□□□ -0.47
VIM-209ENST00000544301 C9orf129Q5T035 196 aaKnown RBP12.13□□□□□ -0.47
VIM-209ENST00000544301 FBN1P35555 2871 aaKnown RBP12.13□□□□□ -0.47
VIM-209ENST00000544301 NCR3O14931 201 aa12.13□□□□□ -0.47
VIM-209ENST00000544301 MUC7Q8TAX7 377 aa12.13□□□□□ -0.47
VIM-209ENST00000544301 DNAH3Q8TD57 4116 aa12.12□□□□□ -0.47
VIM-209ENST00000544301 C3orf56Q8N813 242 aa12.11□□□□□ -0.47
VIM-209ENST00000544301 OBSCN-AS1Q96MR7 158 aa12.11□□□□□ -0.47
VIM-209ENST00000544301 SMCR5Q8TEV8 140 aa12.11□□□□□ -0.47
VIM-209ENST00000544301 ANAPC13Q9BS18 74 aa12.11□□□□□ -0.47
VIM-209ENST00000544301 GVQW2A0A096LPI5 108 aaPredicted RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms