RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 VAMP8Q9BV40 100 aa12.36□□□□□ -0.43
TNFRSF1A-213ENST00000540022 SLPIP03973 132 aa12.35□□□□□ -0.43
TNFRSF1A-213ENST00000540022 SMIM6P0DI80 62 aa12.35□□□□□ -0.43
TNFRSF1A-213ENST00000540022 PAM16Q9Y3D7 125 aa12.35□□□□□ -0.43
TNFRSF1A-213ENST00000540022 HERC2O95714 4834 aa12.35□□□□□ -0.43
TNFRSF1A-213ENST00000540022 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.34□□□□□ -0.43
TNFRSF1A-213ENST00000540022 NMUP48645 174 aa12.34□□□□□ -0.43
TNFRSF1A-213ENST00000540022 C2orf48Q96LS8 159 aa12.34□□□□□ -0.43
TNFRSF1A-213ENST00000540022 TTTY13Q9BZ97 58 aa12.34□□□□□ -0.43
TNFRSF1A-213ENST00000540022 LGALS3P17931 250 aaKnown RBP12.33□□□□□ -0.44
TNFRSF1A-213ENST00000540022 CAMK2N2Q96S95 79 aa12.33□□□□□ -0.44
TNFRSF1A-213ENST00000540022 CKS1BP61024 79 aa12.32□□□□□ -0.44
TNFRSF1A-213ENST00000540022 SPATA45Q537H7 98 aa12.32□□□□□ -0.44
TNFRSF1A-213ENST00000540022 C10orf25Q5T742 122 aa12.32□□□□□ -0.44
TNFRSF1A-213ENST00000540022 UNQ6190/PRO20217Q6UXQ8 127 aa12.32□□□□□ -0.44
TNFRSF1A-213ENST00000540022 NDUFA12Q9UI09 145 aa12.32□□□□□ -0.44
TNFRSF1A-213ENST00000540022 CXCL5P42830 114 aa12.32□□□□□ -0.44
TNFRSF1A-213ENST00000540022 Q6ZRU5 148 aa12.32□□□□□ -0.44
TNFRSF1A-213ENST00000540022 ZNF625Q96I27 306 aaPredicted RBP12.32□□□□□ -0.44
TNFRSF1A-213ENST00000540022 NDUFA1O15239 70 aa12.31□□□□□ -0.44
TNFRSF1A-213ENST00000540022 PCP2Q8IVA1 136 aa12.31□□□□□ -0.44
TNFRSF1A-213ENST00000540022 EREGO14944 169 aa12.3□□□□□ -0.44
TNFRSF1A-213ENST00000540022 SYCNQ0VAF6 134 aa12.3□□□□□ -0.44
TNFRSF1A-213ENST00000540022 F8WDY8 70 aa12.29□□□□□ -0.44
TNFRSF1A-213ENST00000540022 S100A12P80511 92 aa12.29□□□□□ -0.44
TNFRSF1A-213ENST00000540022 FUSP35637 526 aaKnown RBP eCLIP12.28□□□□□ -0.44
TNFRSF1A-213ENST00000540022 CNBPP62633 177 aaKnown RBP12.28□□□□□ -0.44
TNFRSF1A-213ENST00000540022 CARD19Q96LW7 228 aa12.27□□□□□ -0.44
TNFRSF1A-213ENST00000540022 C6orf48Q9UBA6 75 aa12.27□□□□□ -0.44
TNFRSF1A-213ENST00000540022 MYMXA0A1B0GTQ4 84 aa12.27□□□□□ -0.45
TNFRSF1A-213ENST00000540022 ZNF815PA8K554 130 aa12.27□□□□□ -0.45
TNFRSF1A-213ENST00000540022 C9orf116Q5BN46 136 aaPredicted RBP12.26□□□□□ -0.45
TNFRSF1A-213ENST00000540022 SFTA2Q6UW10 78 aa12.26□□□□□ -0.45
TNFRSF1A-213ENST00000540022 C14orf144Q96I85 54 aa12.26□□□□□ -0.45
TNFRSF1A-213ENST00000540022 C12orf57Q99622 126 aa12.26□□□□□ -0.45
TNFRSF1A-213ENST00000540022 COX8AP10176 69 aa12.25□□□□□ -0.45
TNFRSF1A-213ENST00000540022 KRTAP10-2P60368 255 aa12.25□□□□□ -0.45
TNFRSF1A-213ENST00000540022 TP73-AS1Q9UF72 201 aa12.25□□□□□ -0.45
TNFRSF1A-213ENST00000540022 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.24□□□□□ -0.45
TNFRSF1A-213ENST00000540022 TRBV30A0A0K0K1B3 111 aa12.24□□□□□ -0.45
TNFRSF1A-213ENST00000540022 HERV-K104P63124 156 aa12.24□□□□□ -0.45
TNFRSF1A-213ENST00000540022 LRP1BQ9NZR2 4599 aa12.23□□□□□ -0.45
TNFRSF1A-213ENST00000540022 LINC00518Q8N0U6 118 aa12.23□□□□□ -0.45
TNFRSF1A-213ENST00000540022 A0A0J9YXY3 114 aa12.22□□□□□ -0.45
TNFRSF1A-213ENST00000540022 RNF151Q2KHN1 245 aa12.22□□□□□ -0.45
TNFRSF1A-213ENST00000540022 BOD1L2Q8IYS8 172 aa12.22□□□□□ -0.45
TNFRSF1A-213ENST00000540022 C9orf163Q8N9P6 203 aa12.22□□□□□ -0.45
TNFRSF1A-213ENST00000540022 LINC01620Q4KN68 170 aa12.21□□□□□ -0.45
TNFRSF1A-213ENST00000540022 ERG28Q9UKR5 140 aa12.21□□□□□ -0.45
TNFRSF1A-213ENST00000540022 IGLV5-52A0A0A0MRZ9 124 aa12.21□□□□□ -0.46
TNFRSF1A-213ENST00000540022 DNAH5Q8TE73 4624 aa12.21□□□□□ -0.46
TNFRSF1A-213ENST00000540022 MEIG1Q5JSS6 88 aa12.2□□□□□ -0.46
TNFRSF1A-213ENST00000540022 RYR1P21817 5038 aa12.19□□□□□ -0.46
TNFRSF1A-213ENST00000540022 A0A0U1RRA0 63 aa12.19□□□□□ -0.46
TNFRSF1A-213ENST00000540022 DLEU1O43261 78 aa12.19□□□□□ -0.46
TNFRSF1A-213ENST00000540022 PFN2P35080 140 aa12.19□□□□□ -0.46
TNFRSF1A-213ENST00000540022 SLC25A34Q6PIV7 304 aa12.19□□□□□ -0.46
TNFRSF1A-213ENST00000540022 SCGB1D4Q6XE38 83 aa12.19□□□□□ -0.46
TNFRSF1A-213ENST00000540022 PGPEP1Q9NXJ5 209 aa12.19□□□□□ -0.46
TNFRSF1A-213ENST00000540022 SMIM13P0DJ93 91 aa12.18□□□□□ -0.46
TNFRSF1A-213ENST00000540022 PRO1933Q9H354 126 aa12.17□□□□□ -0.46
TNFRSF1A-213ENST00000540022 LINC00587B1AMM8 73 aa12.16□□□□□ -0.46
TNFRSF1A-213ENST00000540022 TLX1NBP0CAT3 122 aa12.16□□□□□ -0.46
TNFRSF1A-213ENST00000540022 LINC00158P58513 81 aa12.16□□□□□ -0.46
TNFRSF1A-213ENST00000540022 COX17Q14061 63 aa12.16□□□□□ -0.46
TNFRSF1A-213ENST00000540022 LITAFQ99732 161 aa12.16□□□□□ -0.46
TNFRSF1A-213ENST00000540022 HSPG2P98160 4391 aa12.15□□□□□ -0.46
TNFRSF1A-213ENST00000540022 NDUFC2-KCTD14E9PQ53 114 aa12.15□□□□□ -0.46
TNFRSF1A-213ENST00000540022 ADAMTSL4-AS1Q5T5F5 129 aa12.15□□□□□ -0.46
TNFRSF1A-213ENST00000540022 SDIM1Q6ZPB5 146 aa12.15□□□□□ -0.46
TNFRSF1A-213ENST00000540022 Q6ZRP5 223 aa12.15□□□□□ -0.46
TNFRSF1A-213ENST00000540022 LOC107984640A0A0U1RRK4 108 aa12.14□□□□□ -0.47
TNFRSF1A-213ENST00000540022 RPL18AQ02543 176 aaKnown RBP12.14□□□□□ -0.47
TNFRSF1A-213ENST00000540022 TIMM17BO60830 172 aa12.13□□□□□ -0.47
TNFRSF1A-213ENST00000540022 CIRBPQ14011 172 aaKnown RBP12.13□□□□□ -0.47
TNFRSF1A-213ENST00000540022 MIR7-3HGQ8N6C7 128 aa12.13□□□□□ -0.47
TNFRSF1A-213ENST00000540022 DAND5Q8N907 189 aa12.13□□□□□ -0.47
TNFRSF1A-213ENST00000540022 UQCR10Q9UDW1 63 aa12.13□□□□□ -0.47
TNFRSF1A-213ENST00000540022 GAGE2EQ4V326 116 aa12.12□□□□□ -0.47
TNFRSF1A-213ENST00000540022 C2orf91Q6ZV80 131 aa12.12□□□□□ -0.47
TNFRSF1A-213ENST00000540022 GAGE2DQ9UEU5 116 aa12.12□□□□□ -0.47
TNFRSF1A-213ENST00000540022 APOBP04114 4563 aaKnown RBP12.12□□□□□ -0.47
TNFRSF1A-213ENST00000540022 GAGE2BQ13066 116 aa12.11□□□□□ -0.47
TNFRSF1A-213ENST00000540022 A0A096LNI7 61 aa12.11□□□□□ -0.47
TNFRSF1A-213ENST00000540022 C16orf90A8MZG2 172 aa12.11□□□□□ -0.47
TNFRSF1A-213ENST00000540022 GCSHP23434 173 aa12.11□□□□□ -0.47
TNFRSF1A-213ENST00000540022 TMEM238C9JI98 176 aa12.1□□□□□ -0.47
TNFRSF1A-213ENST00000540022 XAGE1AQ9HD64 81 aa12.1□□□□□ -0.47
TNFRSF1A-213ENST00000540022 PTTG1IPP53801 180 aa12.09□□□□□ -0.47
TNFRSF1A-213ENST00000540022 MIEN1Q9BRT3 115 aa12.09□□□□□ -0.47
TNFRSF1A-213ENST00000540022 SND1-IT1Q9HBX3 110 aa12.09□□□□□ -0.47
TNFRSF1A-213ENST00000540022 HIGD1BQ9P298 99 aa12.09□□□□□ -0.47
TNFRSF1A-213ENST00000540022 IGKV2-24A0A0C4DH68 120 aa12.08□□□□□ -0.48
TNFRSF1A-213ENST00000540022 CHTF8P0CG12 524 aa12.08□□□□□ -0.48
TNFRSF1A-213ENST00000540022 PKIGQ9Y2B9 76 aa12.08□□□□□ -0.48
TNFRSF1A-213ENST00000540022 PCLOQ9Y6V0 5065 aa12.08□□□□□ -0.48
TNFRSF1A-213ENST00000540022 KRTAP10-1P60331 282 aa12.07□□□□□ -0.48
TNFRSF1A-213ENST00000540022 C9orf129Q5T035 196 aaKnown RBP12.07□□□□□ -0.48
TNFRSF1A-213ENST00000540022 SPANXDQ9BXN6 97 aa12.07□□□□□ -0.48
TNFRSF1A-213ENST00000540022 SPANXB1Q9NS25 103 aaPredicted RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms