RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 TEX15Q9BXT5 2789 aa9.19□□□□□ -0.94
MSH6-210ENST00000540021 GCN1Q92616 2671 aaKnown RBP9.19□□□□□ -0.94
MSH6-210ENST00000540021 IGLV5-45A0A087WSX0 123 aa9.18□□□□□ -0.94
MSH6-210ENST00000540021 DNAJC9-AS1A6NH13 148 aa9.18□□□□□ -0.94
MSH6-210ENST00000540021 KRTAP10-9P60411 292 aa9.18□□□□□ -0.94
MSH6-210ENST00000540021 SCXQ7RTU7 201 aa9.18□□□□□ -0.94
MSH6-210ENST00000540021 LINC00959A0A1B0GUT2 108 aa9.18□□□□□ -0.94
MSH6-210ENST00000540021 SERP2Q8N6R1 65 aa9.18□□□□□ -0.94
MSH6-210ENST00000540021 JMJD7-PLA2G4BH0Y9G9 81 aa9.18□□□□□ -0.94
MSH6-210ENST00000540021 HILS1P60008 231 aa9.18□□□□□ -0.94
MSH6-210ENST00000540021 DEFB113Q30KQ7 82 aa9.18□□□□□ -0.94
MSH6-210ENST00000540021 PRORYQ9H606 182 aa9.18□□□□□ -0.94
MSH6-210ENST00000540021 DAD1P61803 113 aa9.17□□□□□ -0.94
MSH6-210ENST00000540021 TRAV25A0A0B4J276 109 aa9.17□□□□□ -0.94
MSH6-210ENST00000540021 UPK3BQ9BT76 320 aa9.17□□□□□ -0.94
MSH6-210ENST00000540021 FLNAP21333 2647 aaKnown RBP9.17□□□□□ -0.94
MSH6-210ENST00000540021 TRBV6-4A0A1B0GX49 114 aa9.17□□□□□ -0.94
MSH6-210ENST00000540021 TMEM256-PLSCR3K7ERE1 68 aa9.17□□□□□ -0.94
MSH6-210ENST00000540021 VPS13CQ709C8 3753 aa9.16□□□□□ -0.94
MSH6-210ENST00000540021 A8MTW9 85 aa9.16□□□□□ -0.94
MSH6-210ENST00000540021 RBM3P98179 157 aaKnown RBP9.16□□□□□ -0.94
MSH6-210ENST00000540021 FAM19A5Q7Z5A7 132 aaPredicted RBP9.16□□□□□ -0.94
MSH6-210ENST00000540021 CSDC2Q9Y534 153 aaKnown RBP9.15□□□□□ -0.94
MSH6-210ENST00000540021 DEFB135Q30KP9 77 aa9.15□□□□□ -0.94
MSH6-210ENST00000540021 BBC3Q96PG8 261 aaPredicted RBP9.15□□□□□ -0.94
MSH6-210ENST00000540021 IGKV2-28A0A075B6P5 120 aa9.14□□□□□ -0.95
MSH6-210ENST00000540021 IGKV2D-28P01615 120 aa9.14□□□□□ -0.95
MSH6-210ENST00000540021 FAM19A1Q7Z5A9 133 aa9.14□□□□□ -0.95
MSH6-210ENST00000540021 C9orf129Q5T035 196 aaKnown RBP9.14□□□□□ -0.95
MSH6-210ENST00000540021 XAGE1AQ9HD64 81 aa9.14□□□□□ -0.95
MSH6-210ENST00000540021 SPAG11BQ08648 103 aa9.14□□□□□ -0.95
MSH6-210ENST00000540021 DEFB121Q5J5C9 76 aa9.14□□□□□ -0.95
MSH6-210ENST00000540021 CHCHD10Q8WYQ3 142 aaPredicted RBP9.13□□□□□ -0.95
MSH6-210ENST00000540021 KLK12Q9UKR0 248 aa9.13□□□□□ -0.95
MSH6-210ENST00000540021 Q6JHZ5 121 aa9.13□□□□□ -0.95
MSH6-210ENST00000540021 UTP20O75691 2785 aaKnown RBP9.13□□□□□ -0.95
MSH6-210ENST00000540021 KIR2DL5BQ8NHK3 375 aa9.12□□□□□ -0.95
MSH6-210ENST00000540021 A0A087WZ39 114 aa9.12□□□□□ -0.95
MSH6-210ENST00000540021 LINC00482Q8N8I6 264 aa9.12□□□□□ -0.95
MSH6-210ENST00000540021 PRO0255Q9UI72 69 aa9.12□□□□□ -0.95
MSH6-210ENST00000540021 ZNF561-AS1K7EIQ3 104 aa9.11□□□□□ -0.95
MSH6-210ENST00000540021 REG3AQ06141 175 aa9.11□□□□□ -0.95
MSH6-210ENST00000540021 DEFB105AQ8NG35 78 aa9.11□□□□□ -0.95
MSH6-210ENST00000540021 SNURFQ9Y675 71 aa9.11□□□□□ -0.95
MSH6-210ENST00000540021 FBN2P35556 2912 aa9.11□□□□□ -0.95
MSH6-210ENST00000540021 IGHV3OR16-9A0A0B4J2B5 98 aa9.11□□□□□ -0.95
MSH6-210ENST00000540021 F8P00451 2351 aa9.1□□□□□ -0.95
MSH6-210ENST00000540021 Q6ZQY7 126 aa9.1□□□□□ -0.95
MSH6-210ENST00000540021 FHL2Q14192 279 aa9.1□□□□□ -0.95
MSH6-210ENST00000540021 CCKP06307 115 aa9.09□□□□□ -0.95
MSH6-210ENST00000540021 ITPR3Q14573 2671 aa9.09□□□□□ -0.95
MSH6-210ENST00000540021 NF1P21359 2839 aa9.09□□□□□ -0.95
MSH6-210ENST00000540021 HRCT1Q6UXD1 115 aa9.09□□□□□ -0.95
MSH6-210ENST00000540021 Q8N814 137 aa9.09□□□□□ -0.95
MSH6-210ENST00000540021 TMEM258P61165 79 aa9.08□□□□□ -0.96
MSH6-210ENST00000540021 SMIM9A6NGZ8 99 aa9.08□□□□□ -0.96
MSH6-210ENST00000540021 IGHV4-28A0A0C4DH34 117 aa9.08□□□□□ -0.96
MSH6-210ENST00000540021 HIGD2BQ4VC39 106 aa9.08□□□□□ -0.96
MSH6-210ENST00000540021 CFAP46Q8IYW2 2715 aa9.08□□□□□ -0.96
MSH6-210ENST00000540021 C5orf47Q569G3 176 aa9.07□□□□□ -0.96
MSH6-210ENST00000540021 UNQ6190/PRO20217Q6UXQ8 127 aa9.07□□□□□ -0.96
MSH6-210ENST00000540021 LINC01006Q8NI28 216 aa9.06□□□□□ -0.96
MSH6-210ENST00000540021 C6orf223Q8N319 242 aa9.05□□□□□ -0.96
MSH6-210ENST00000540021 Q8IZM0 81 aa9.05□□□□□ -0.96
MSH6-210ENST00000540021 Q8N3U1 123 aa9.05□□□□□ -0.96
MSH6-210ENST00000540021 CAMK2N2Q96S95 79 aa9.05□□□□□ -0.96
MSH6-210ENST00000540021 FAM236DA0A1B0GTK5 79 aa9.04□□□□□ -0.96
MSH6-210ENST00000540021 FAM236CP0DP71 79 aa9.04□□□□□ -0.96
MSH6-210ENST00000540021 DIRC1Q969H9 104 aa9.04□□□□□ -0.96
MSH6-210ENST00000540021 IGSF10Q6WRI0 2623 aa9.04□□□□□ -0.96
MSH6-210ENST00000540021 CRYGAP11844 174 aa9.04□□□□□ -0.96
MSH6-210ENST00000540021 CD164L2Q6UWJ8 174 aa9.03□□□□□ -0.96
MSH6-210ENST00000540021 PRB2P02812 416 aaPredicted RBP9.02□□□□□ -0.96
MSH6-210ENST00000540021 ZNF843Q8N446 348 aa9.02□□□□□ -0.97
MSH6-210ENST00000540021 LINC01561Q8N1V8 128 aa9.01□□□□□ -0.97
MSH6-210ENST00000540021 CELSR2Q9HCU4 2923 aa9.01□□□□□ -0.97
MSH6-210ENST00000540021 FASNP49327 2511 aaKnown RBP9.01□□□□□ -0.97
MSH6-210ENST00000540021 ATP5EP2Q5VTU8 51 aa9.01□□□□□ -0.97
MSH6-210ENST00000540021 C1orf43Q9BWL3 253 aa9.01□□□□□ -0.97
MSH6-210ENST00000540021 CYSRT1A8MQ03 144 aa9□□□□□ -0.97
MSH6-210ENST00000540021 MXRA5Q9NR99 2828 aa9□□□□□ -0.97
MSH6-210ENST00000540021 LINC01600Q96MT4 127 aa8.99□□□□□ -0.97
MSH6-210ENST00000540021 COX7BP24311 80 aa8.99□□□□□ -0.97
MSH6-210ENST00000540021 MRAPQ8TCY5 172 aa8.99□□□□□ -0.97
MSH6-210ENST00000540021 DPH3Q96FX2 82 aa8.99□□□□□ -0.97
MSH6-210ENST00000540021 NKAPP1Q8N9T2 125 aa8.99□□□□□ -0.97
MSH6-210ENST00000540021 IGKV2D-24A0A075B6R9 120 aa8.99□□□□□ -0.97
MSH6-210ENST00000540021 IGLV1-51P01701 117 aa8.99□□□□□ -0.97
MSH6-210ENST00000540021 NREPQ16612 68 aa8.99□□□□□ -0.97
MSH6-210ENST00000540021 C4orf26Q17RF5 130 aa8.99□□□□□ -0.97
MSH6-210ENST00000540021 C3orf84H3BNL1 204 aa8.98□□□□□ -0.97
MSH6-210ENST00000540021 APOC4P55056 127 aa8.98□□□□□ -0.97
MSH6-210ENST00000540021 NDUFC2O95298 119 aa8.98□□□□□ -0.97
MSH6-210ENST00000540021 TRBV10-3A0A0K0K1G6 114 aa8.97□□□□□ -0.97
MSH6-210ENST00000540021 ATRQ13535 2644 aa8.97□□□□□ -0.97
MSH6-210ENST00000540021 F8WEM9 126 aa8.97□□□□□ -0.97
MSH6-210ENST00000540021 SPART-AS1P0CW21 52 aa8.97□□□□□ -0.97
MSH6-210ENST00000540021 MPLKIPQ8TAP9 179 aa8.96□□□□□ -0.97
MSH6-210ENST00000540021 CYSTM1Q9H1C7 97 aa8.96□□□□□ -0.97
MSH6-210ENST00000540021 HECTD1Q9ULT8 2610 aa8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms