RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 SS18Q15532 418 aa7.87□□□□□ -1.15
SYNE1-237ENST00000539504 C2orf48Q96LS8 159 aa7.87□□□□□ -1.15
SYNE1-237ENST00000539504 USP17L23D6RBM5 183 aa7.87□□□□□ -1.15
SYNE1-237ENST00000539504 GIG44P09565 113 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-237ENST00000539504 PLAC8L1A1L4L8 177 aa7.86□□□□□ -1.15
SYNE1-237ENST00000539504 CRYGAP11844 174 aa7.86□□□□□ -1.15
SYNE1-237ENST00000539504 FHL2Q14192 279 aa7.86□□□□□ -1.15
SYNE1-237ENST00000539504 WFDC9Q8NEX5 89 aa7.86□□□□□ -1.15
SYNE1-237ENST00000539504 GYPEP15421 78 aa7.86□□□□□ -1.15
SYNE1-237ENST00000539504 MTORP42345 2549 aa7.85□□□□□ -1.15
SYNE1-237ENST00000539504 SERP2Q8N6R1 65 aa7.85□□□□□ -1.15
SYNE1-237ENST00000539504 PRB1P04280 392 aa7.85□□□□□ -1.15
SYNE1-237ENST00000539504 IGSF10Q6WRI0 2623 aa7.85□□□□□ -1.15
SYNE1-237ENST00000539504 DNAJC9-AS1A6NH13 148 aa7.85□□□□□ -1.15
SYNE1-237ENST00000539504 CMC4P56277 68 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-237ENST00000539504 CYSTM1Q9H1C7 97 aa7.84□□□□□ -1.15
SYNE1-237ENST00000539504 IGLV10-54A0A075B6I4 117 aa7.84□□□□□ -1.16
SYNE1-237ENST00000539504 DEFB113Q30KQ7 82 aa7.84□□□□□ -1.16
SYNE1-237ENST00000539504 NF1P21359 2839 aa7.83□□□□□ -1.16
SYNE1-237ENST00000539504 CCKP06307 115 aa7.83□□□□□ -1.16
SYNE1-237ENST00000539504 HILS1P60008 231 aa7.83□□□□□ -1.16
SYNE1-237ENST00000539504 LINC01561Q8N1V8 128 aa7.83□□□□□ -1.16
SYNE1-237ENST00000539504 TRAV23DV6A0A075B6W5 121 aa7.83□□□□□ -1.16
SYNE1-237ENST00000539504 FAM19A5Q7Z5A7 132 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-237ENST00000539504 S100A7L2Q5SY68 101 aa7.83□□□□□ -1.16
SYNE1-237ENST00000539504 OBSCN-AS1Q96MR7 158 aa7.83□□□□□ -1.16
SYNE1-237ENST00000539504 JMJD7-PLA2G4BH0Y9G9 81 aa7.82□□□□□ -1.16
SYNE1-237ENST00000539504 KIR2DL5BQ8NHK3 375 aa7.82□□□□□ -1.16
SYNE1-237ENST00000539504 ENHOQ6UWT2 76 aa7.81□□□□□ -1.16
SYNE1-237ENST00000539504 Q8N814 137 aa7.81□□□□□ -1.16
SYNE1-237ENST00000539504 TMEM256-PLSCR3K7ERE1 68 aa7.81□□□□□ -1.16
SYNE1-237ENST00000539504 GHRHP01286 108 aa7.81□□□□□ -1.16
SYNE1-237ENST00000539504 C9orf116Q5BN46 136 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-237ENST00000539504 DSCR8Q96T75 97 aa7.81□□□□□ -1.16
SYNE1-237ENST00000539504 ACANP16112 2415 aa7.8□□□□□ -1.16
SYNE1-237ENST00000539504 C6orf99Q4VX62 202 aa7.8□□□□□ -1.16
SYNE1-237ENST00000539504 Q8IZM0 81 aa7.8□□□□□ -1.16
SYNE1-237ENST00000539504 UBL5Q9BZL1 73 aa7.8□□□□□ -1.16
SYNE1-237ENST00000539504 NIPBLQ6KC79 2804 aaeCLIP7.8□□□□□ -1.16
SYNE1-237ENST00000539504 SETXQ7Z333 2677 aaKnown RBP7.8□□□□□ -1.16
SYNE1-237ENST00000539504 FAM19A1Q7Z5A9 133 aa7.8□□□□□ -1.16
SYNE1-237ENST00000539504 LINC00269Q8N2A0 174 aa7.8□□□□□ -1.16
SYNE1-237ENST00000539504 CR1P17927 2039 aa7.8□□□□□ -1.16
SYNE1-237ENST00000539504 ESM1Q9NQ30 184 aa7.8□□□□□ -1.16
SYNE1-237ENST00000539504 LAMTOR3Q9UHA4 124 aa7.8□□□□□ -1.16
SYNE1-237ENST00000539504 LY6G6DO95868 133 aa7.79□□□□□ -1.16
SYNE1-237ENST00000539504 TMEM258P61165 79 aa7.79□□□□□ -1.16
SYNE1-237ENST00000539504 ANGP03950 147 aaKnown RBP7.79□□□□□ -1.16
SYNE1-237ENST00000539504 CSNK1G2-AS1Q8NCQ2 148 aa7.79□□□□□ -1.16
SYNE1-237ENST00000539504 BBC3Q96PG8 261 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-237ENST00000539504 IGLV1-51P01701 117 aa7.77□□□□□ -1.17
SYNE1-237ENST00000539504 NBEAL2Q6ZNJ1 2754 aa7.77□□□□□ -1.17
SYNE1-237ENST00000539504 SMIM9A6NGZ8 99 aa7.76□□□□□ -1.17
SYNE1-237ENST00000539504 NANOS2P60321 138 aaKnown RBP7.76□□□□□ -1.17
SYNE1-237ENST00000539504 LINC01006Q8NI28 216 aa7.76□□□□□ -1.17
SYNE1-237ENST00000539504 CHCHD10Q8WYQ3 142 aaPredicted RBP7.76□□□□□ -1.17
SYNE1-237ENST00000539504 C19orf73Q9NVV2 129 aa7.76□□□□□ -1.17
SYNE1-237ENST00000539504 DEFB4AO15263 64 aa7.76□□□□□ -1.17
SYNE1-237ENST00000539504 HAMPP81172 84 aa7.76□□□□□ -1.17
SYNE1-237ENST00000539504 DPH3Q96FX2 82 aa7.76□□□□□ -1.17
SYNE1-237ENST00000539504 UPK3BQ9BT76 320 aa7.76□□□□□ -1.17
SYNE1-237ENST00000539504 C20orf197Q8N268 126 aa7.76□□□□□ -1.17
SYNE1-237ENST00000539504 WFDC11Q8NEX6 87 aa7.76□□□□□ -1.17
SYNE1-237ENST00000539504 PRO0255Q9UI72 69 aa7.76□□□□□ -1.17
SYNE1-237ENST00000539504 Q8N3U1 123 aa7.75□□□□□ -1.17
SYNE1-237ENST00000539504 GCN1Q92616 2671 aaKnown RBP7.75□□□□□ -1.17
SYNE1-237ENST00000539504 FLNAP21333 2647 aaKnown RBP7.75□□□□□ -1.17
SYNE1-237ENST00000539504 RBM3P98179 157 aaKnown RBP7.75□□□□□ -1.17
SYNE1-237ENST00000539504 ATP5EP2Q5VTU8 51 aa7.75□□□□□ -1.17
SYNE1-237ENST00000539504 A0A1B0GUV1 79 aa7.74□□□□□ -1.17
SYNE1-237ENST00000539504 RPS28P62857 69 aaKnown RBP7.74□□□□□ -1.17
SYNE1-237ENST00000539504 ITPR3Q14573 2671 aa7.74□□□□□ -1.17
SYNE1-237ENST00000539504 CD164L2Q6UWJ8 174 aa7.74□□□□□ -1.17
SYNE1-237ENST00000539504 HIVEP2P31629 2446 aa7.74□□□□□ -1.17
SYNE1-237ENST00000539504 REG3AQ06141 175 aa7.73□□□□□ -1.17
SYNE1-237ENST00000539504 C5orf47Q569G3 176 aa7.73□□□□□ -1.17
SYNE1-237ENST00000539504 NDUFC2O95298 119 aa7.73□□□□□ -1.17
SYNE1-237ENST00000539504 HTN3P15516 51 aa7.73□□□□□ -1.17
SYNE1-237ENST00000539504 LINC00167Q96N53 147 aa7.72□□□□□ -1.17
SYNE1-237ENST00000539504 COX17Q14061 63 aa7.72□□□□□ -1.17
SYNE1-237ENST00000539504 KIAA0087Q14695 138 aa7.72□□□□□ -1.17
SYNE1-237ENST00000539504 UNQ6190/PRO20217Q6UXQ8 127 aa7.72□□□□□ -1.17
SYNE1-237ENST00000539504 C6orf223Q8N319 242 aa7.72□□□□□ -1.17
SYNE1-237ENST00000539504 SPAG11BQ08648 103 aa7.71□□□□□ -1.18
SYNE1-237ENST00000539504 LINC00575Q6W349 94 aa7.71□□□□□ -1.18
SYNE1-237ENST00000539504 Q6ZQY7 126 aa7.7□□□□□ -1.18
SYNE1-237ENST00000539504 Q8NDZ9 215 aa7.7□□□□□ -1.18
SYNE1-237ENST00000539504 C10orf25Q5T742 122 aa7.7□□□□□ -1.18
SYNE1-237ENST00000539504 ZNF561-AS1K7EIQ3 104 aa7.69□□□□□ -1.18
SYNE1-237ENST00000539504 LINC00482Q8N8I6 264 aa7.69□□□□□ -1.18
SYNE1-237ENST00000539504 M0R2N4 97 aa7.68□□□□□ -1.18
SYNE1-237ENST00000539504 DEFB135Q30KP9 77 aa7.68□□□□□ -1.18
SYNE1-237ENST00000539504 DAD1P61803 113 aa7.68□□□□□ -1.18
SYNE1-237ENST00000539504 Q6ZQT0 140 aa7.68□□□□□ -1.18
SYNE1-237ENST00000539504 OXTP01178 125 aa7.68□□□□□ -1.18
SYNE1-237ENST00000539504 KRTAP1-3Q8IUG1 177 aa7.68□□□□□ -1.18
SYNE1-237ENST00000539504 ZNF843Q8N446 348 aa7.68□□□□□ -1.18
SYNE1-237ENST00000539504 XAGE1AQ9HD64 81 aa7.68□□□□□ -1.18
SYNE1-237ENST00000539504 CYSRT1A8MQ03 144 aa7.67□□□□□ -1.18
SYNE1-237ENST00000539504 C4orf26Q17RF5 130 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms