RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 CST9LQ9H4G1 147 aa3.1□□□□□ -1.91
USH1C-210ENST00000534556 MT-ND6P03923 174 aa3.09□□□□□ -1.91
USH1C-210ENST00000534556 SPINK8P0C7L1 97 aa3.09□□□□□ -1.91
USH1C-210ENST00000534556 KRTAP10-8P60410 259 aa3.09□□□□□ -1.91
USH1C-210ENST00000534556 GAGE2EQ4V326 116 aa3.09□□□□□ -1.91
USH1C-210ENST00000534556 FAM19A5Q7Z5A7 132 aaPredicted RBP3.09□□□□□ -1.91
USH1C-210ENST00000534556 TOMM7Q9P0U1 55 aa3.09□□□□□ -1.91
USH1C-210ENST00000534556 GAGE2DQ9UEU5 116 aa3.09□□□□□ -1.91
USH1C-210ENST00000534556 TRAPPC1Q9Y5R8 145 aa3.09□□□□□ -1.91
USH1C-210ENST00000534556 TRBV30A0A0K0K1B3 111 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 TINCRA0A1B0GVN0 87 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 C11orf86A6NJI1 115 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 NDUFC2-KCTD14E9PQ53 114 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 F8WDY8 70 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 NUPR1O60356 82 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 SNAPINO95295 136 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 LINC00614P0C842 121 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 PMVKQ15126 192 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 COX19Q49B96 90 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 Q6ZN92 141 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 FA2HQ7L5A8 372 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 Q8IZM0 81 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 SVBPQ8N300 66 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 Q8NDZ9 215 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 C7orf33Q8WU49 177 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 LINC01600Q96MT4 127 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 C2orf88Q9BSF0 95 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 XAGE1AQ9HD64 81 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 LINC00474Q9P2X8 69 aa3.08□□□□□ -1.92
USH1C-210ENST00000534556 IGLV5-39A0A0G2JS06 123 aa3.07□□□□□ -1.92
USH1C-210ENST00000534556 SCO1O75880 301 aa3.07□□□□□ -1.92
USH1C-210ENST00000534556 IGLC3P0DOY3 106 aa3.07□□□□□ -1.92
USH1C-210ENST00000534556 ZNF22P17026 224 aaPredicted RBP3.07□□□□□ -1.92
USH1C-210ENST00000534556 HERVK_113P63121 156 aa3.07□□□□□ -1.92
USH1C-210ENST00000534556 C6orf226Q5I0X4 101 aa3.07□□□□□ -1.92
USH1C-210ENST00000534556 COX7B2Q8TF08 81 aa3.07□□□□□ -1.92
USH1C-210ENST00000534556 COLCA2A8K830 154 aa3.06□□□□□ -1.92
USH1C-210ENST00000534556 F8VRH5 84 aa3.06□□□□□ -1.92
USH1C-210ENST00000534556 M0QXV9 152 aa3.06□□□□□ -1.92
USH1C-210ENST00000534556 HBDP02042 147 aa3.06□□□□□ -1.92
USH1C-210ENST00000534556 TRGC2P03986 189 aa3.06□□□□□ -1.92
USH1C-210ENST00000534556 KRTAP1-4P0C5Y4 121 aa3.06□□□□□ -1.92
USH1C-210ENST00000534556 C1orf137Q5JT78 98 aa3.06□□□□□ -1.92
USH1C-210ENST00000534556 SPINK6Q6UWN8 80 aa3.06□□□□□ -1.92
USH1C-210ENST00000534556 FAM19A2Q8N3H0 131 aa3.06□□□□□ -1.92
USH1C-210ENST00000534556 GEMIN7Q9H840 131 aaKnown RBP3.06□□□□□ -1.92
USH1C-210ENST00000534556 SMCO4Q9NRQ5 59 aa3.06□□□□□ -1.92
USH1C-210ENST00000534556 C22orf24Q9Y442 160 aa3.06□□□□□ -1.92
USH1C-210ENST00000534556 IGLV7-43P04211 117 aa3.05□□□□□ -1.92
USH1C-210ENST00000534556 PRSS2P07478 247 aa3.05□□□□□ -1.92
USH1C-210ENST00000534556 G0S2P27469 103 aa3.05□□□□□ -1.92
USH1C-210ENST00000534556 NDUFA6P56556 154 aa3.05□□□□□ -1.92
USH1C-210ENST00000534556 RAB5BP61020 215 aa3.05□□□□□ -1.92
USH1C-210ENST00000534556 CKS1BP61024 79 aa3.05□□□□□ -1.92
USH1C-210ENST00000534556 PAPPA-AS1Q5QFB9 102 aa3.05□□□□□ -1.92
USH1C-210ENST00000534556 BAGE3Q86Y29 109 aa3.05□□□□□ -1.92
USH1C-210ENST00000534556 PACRGQ96M98 296 aaPredicted RBP3.05□□□□□ -1.92
USH1C-210ENST00000534556 SEC11AP67812 179 aa3.04□□□□□ -1.92
USH1C-210ENST00000534556 NDUFA5Q16718 116 aa3.04□□□□□ -1.92
USH1C-210ENST00000534556 PRR26Q8N8Z3 221 aa3.04□□□□□ -1.92
USH1C-210ENST00000534556 ZNF625Q96I27 306 aaPredicted RBP3.04□□□□□ -1.92
USH1C-210ENST00000534556 LINC00167Q96N53 147 aa3.04□□□□□ -1.92
USH1C-210ENST00000534556 PKIGQ9Y2B9 76 aa3.04□□□□□ -1.92
USH1C-210ENST00000534556 IGLV5-37A0A075B6J1 123 aa3.03□□□□□ -1.92
USH1C-210ENST00000534556 TMEM223A0PJW6 202 aa3.03□□□□□ -1.92
USH1C-210ENST00000534556 LINC01549A6NIU2 74 aa3.03□□□□□ -1.92
USH1C-210ENST00000534556 RPL37AP8A6NKH3 93 aa3.03□□□□□ -1.92
USH1C-210ENST00000534556 H0Y9J4 135 aa3.03□□□□□ -1.92
USH1C-210ENST00000534556 SERF1AO75920 110 aa3.03□□□□□ -1.92
USH1C-210ENST00000534556 VPREB1P12018 145 aa3.03□□□□□ -1.92
USH1C-210ENST00000534556 PFN2P35080 140 aa3.03□□□□□ -1.92
USH1C-210ENST00000534556 TSPEAR-AS2P59090 65 aa3.03□□□□□ -1.92
USH1C-210ENST00000534556 KRTAP13-1Q8IUC0 172 aa3.03□□□□□ -1.92
USH1C-210ENST00000534556 IFI27L1Q96BM0 104 aa3.03□□□□□ -1.92
USH1C-210ENST00000534556 CHCHD1Q96BP2 118 aaKnown RBP3.03□□□□□ -1.92
USH1C-210ENST00000534556 PLA2G2DQ9UNK4 145 aa3.03□□□□□ -1.92
USH1C-210ENST00000534556 CHTOPQ9Y3Y2 248 aaKnown RBP3.03□□□□□ -1.92
USH1C-210ENST00000534556 TRAV12-1A0A0B4J245 112 aa3.02□□□□□ -1.93
USH1C-210ENST00000534556 GAGE10A6NGK3 116 aa3.02□□□□□ -1.93
USH1C-210ENST00000534556 ATP5LO75964 103 aa3.02□□□□□ -1.93
USH1C-210ENST00000534556 CXCL5P42830 114 aa3.02□□□□□ -1.93
USH1C-210ENST00000534556 TMEM170BQ5T4T1 132 aa3.02□□□□□ -1.93
USH1C-210ENST00000534556 MRPL55Q7Z7F7 128 aaKnown RBP3.02□□□□□ -1.93
USH1C-210ENST00000534556 SND1-IT1Q9HBX3 110 aa3.02□□□□□ -1.93
USH1C-210ENST00000534556 A0A0U1RRA0 63 aa3.01□□□□□ -1.93
USH1C-210ENST00000534556 EIF4EBP3O60516 100 aaPredicted RBP3.01□□□□□ -1.93
USH1C-210ENST00000534556 UBE2BP63146 152 aa3.01□□□□□ -1.93
USH1C-210ENST00000534556 REG3GQ6UW15 175 aa3.01□□□□□ -1.93
USH1C-210ENST00000534556 PMCHL2Q9BQD1 86 aa3.01□□□□□ -1.93
USH1C-210ENST00000534556 ANAPC11Q9NYG5 84 aa3.01□□□□□ -1.93
USH1C-210ENST00000534556 TP73-AS1Q9UF72 201 aa3.01□□□□□ -1.93
USH1C-210ENST00000534556 ERG28Q9UKR5 140 aa3.01□□□□□ -1.93
USH1C-210ENST00000534556 IGKV2-28A0A075B6P5 120 aa3□□□□□ -1.93
USH1C-210ENST00000534556 A0A087X002 238 aa3□□□□□ -1.93
USH1C-210ENST00000534556 TMEM238C9JI98 176 aa3□□□□□ -1.93
USH1C-210ENST00000534556 H0Y8G0 127 aa3□□□□□ -1.93
USH1C-210ENST00000534556 H3BRM9 83 aa3□□□□□ -1.93
USH1C-210ENST00000534556 ZNF861PO60384 105 aa3□□□□□ -1.93
USH1C-210ENST00000534556 HIST1H2BKO60814 126 aa3□□□□□ -1.93
USH1C-210ENST00000534556 HSBP1O75506 76 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms